Wall clock time and date at job start Tue Mar 31 2020 22:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30259 * 125.61915 * 2 1 4 4 C 1.34474 * 108.70211 * 180.02562 * 3 2 1 5 5 C 1.50701 * 126.16541 * 179.97438 * 4 3 2 6 6 C 1.34327 * 107.66914 * 0.02562 * 4 3 2 7 7 C 1.50707 * 126.44217 * 179.97438 * 6 4 3 8 8 N 1.46895 * 109.46819 * 90.00138 * 7 6 4 9 9 C 1.46899 * 110.99736 * 179.97438 * 8 7 6 10 10 H 1.09000 * 112.90940 * 23.75151 * 9 8 7 11 11 C 1.53786 * 113.61541 * 154.99883 * 9 8 7 12 12 C 1.53781 * 87.17350 * 140.02506 * 11 9 8 13 13 H 1.08999 * 113.61567 * 89.07405 * 12 11 9 14 14 N 1.46500 * 113.61760 * 219.89426 * 12 11 9 15 15 C 1.34768 * 120.00289 * 205.00346 * 14 12 11 16 16 O 1.21284 * 119.99912 * 359.97438 * 15 14 12 17 17 C 1.50696 * 120.00132 * 179.97438 * 15 14 12 18 18 S 1.81002 * 109.47324 * 179.97438 * 17 15 14 19 19 C 1.76203 * 99.99950 * 180.02562 * 18 17 15 20 20 H 1.07995 * 120.00056 * 359.97438 * 19 18 17 21 21 C 1.38804 * 119.99890 * 180.02562 * 19 18 17 22 22 N 1.31629 * 119.99618 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00004 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47040 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47189 * 119.99760 * 23 21 19 26 26 H 1.48494 * 109.47158 * 239.99720 * 23 21 19 27 27 C 1.53781 * 87.08070 * 334.52830 * 12 11 9 28 28 O 1.33967 * 125.62419 * 180.34220 * 2 1 3 29 29 H 1.08990 * 109.47500 * 89.97438 * 1 2 3 30 30 H 1.09006 * 109.46740 * 209.97280 * 1 2 3 31 31 H 1.09007 * 109.47162 * 329.96840 * 1 2 3 32 32 H 1.09000 * 109.47325 * 270.00192 * 5 4 3 33 33 H 1.09011 * 109.47138 * 30.00351 * 5 4 3 34 34 H 1.08997 * 109.47294 * 149.99915 * 5 4 3 35 35 H 1.09000 * 109.46920 * 329.99895 * 7 6 4 36 36 H 1.08994 * 109.46921 * 210.00059 * 7 6 4 37 37 H 1.00896 * 111.00073 * 56.04841 * 8 7 6 38 38 H 1.09002 * 113.61357 * 25.43422 * 11 9 8 39 39 H 1.09002 * 113.61608 * 254.61584 * 11 9 8 40 40 H 0.97000 * 119.99380 * 24.99478 * 14 12 11 41 41 H 1.09000 * 109.47296 * 299.99988 * 17 15 14 42 42 H 1.09002 * 109.47445 * 59.99729 * 17 15 14 43 43 H 0.97005 * 119.99501 * 180.02562 * 22 21 19 44 44 H 1.09005 * 113.61471 * 139.98321 * 27 12 11 45 45 H 1.08996 * 113.61178 * 270.79663 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5521 0.6676 -0.0006 5 6 4.7570 1.5728 -0.0013 6 6 3.5698 -0.6756 -0.0015 7 6 4.7938 -1.5548 -0.0029 8 7 5.1923 -1.8414 1.3816 9 6 6.3847 -2.6986 1.4194 10 1 6.9844 -2.6317 0.5116 11 6 7.2056 -2.5554 2.7119 12 6 7.4023 -4.0799 2.6656 13 1 8.2797 -4.3899 2.0979 14 7 7.3186 -4.7227 3.9794 15 6 7.9400 -5.8990 4.1949 16 8 8.5681 -6.4257 3.3011 17 6 7.8543 -6.5598 5.5465 18 16 8.7839 -8.1127 5.5190 19 6 8.5207 -8.6563 7.1742 20 1 7.9280 -8.0588 7.8510 21 6 9.0760 -9.8519 7.6086 22 7 9.7988 -10.5799 6.7838 23 14 8.7975 -10.4279 9.3636 24 1 7.9570 -9.4369 10.0824 25 1 8.1093 -11.7438 9.3495 26 1 10.1053 -10.5607 10.0544 27 6 6.0934 -4.1454 1.8611 28 8 2.2873 -1.0889 -0.0065 29 1 -0.3634 0.0005 -1.0275 30 1 -0.3633 -0.8903 0.5134 31 1 -0.3634 0.8898 0.5144 32 1 5.0470 1.7909 -1.0291 33 1 4.5132 2.5027 0.5126 34 1 5.5823 1.0796 0.5122 35 1 5.6077 -1.0436 -0.5170 36 1 4.5693 -2.4892 -0.5172 37 1 4.4319 -2.2573 1.8980 38 1 6.6195 -2.2165 3.5661 39 1 8.1296 -1.9918 2.5821 40 1 6.8161 -4.3014 4.6941 41 1 8.2757 -5.8971 6.3024 42 1 6.8108 -6.7657 5.7849 43 1 10.1865 -11.4156 7.0873 44 1 6.1191 -4.8654 1.0431 45 1 5.2033 -4.2427 2.4827 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690325451.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:12 Heat of formation + Delta-G solvation = -0.353211 kcal Electronic energy + Delta-G solvation = -25372.673308 eV Core-core repulsion = 21518.501077 eV Total energy + Delta-G solvation = -3854.172231 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.71484 -40.11953 -38.38025 -35.69697 -35.39762 -33.37678 -32.44220 -32.31853 -29.79572 -29.21049 -27.98324 -25.93505 -25.51702 -24.53880 -23.06931 -22.11879 -21.03748 -20.40842 -20.09838 -17.81556 -17.33468 -17.01319 -16.63268 -16.33446 -16.04617 -15.31517 -14.92905 -14.87870 -14.81085 -14.42548 -14.26400 -13.90894 -13.69501 -13.46811 -13.32143 -13.18480 -13.06190 -12.99783 -12.77759 -12.66516 -12.58070 -12.32779 -11.93521 -11.48069 -11.24436 -11.20938 -11.08418 -11.04197 -11.02745 -10.81389 -10.74788 -9.81368 -9.40267 -9.09688 -9.07259 -8.89371 -8.74038 -8.24538 -6.51215 -6.23023 -3.93476 1.00640 2.21885 2.27322 3.02315 3.04753 3.20678 3.27382 3.31959 3.56043 3.65892 3.86384 4.19245 4.21570 4.31710 4.34561 4.47801 4.59030 4.64995 4.71027 4.84923 4.86884 4.93715 5.10202 5.11969 5.12426 5.24854 5.27854 5.34974 5.41287 5.45709 5.52051 5.60463 5.64160 5.69995 5.73613 5.75409 5.87668 5.98332 6.01422 6.12869 6.50862 6.65582 6.79803 7.38049 7.58855 7.70422 8.34338 8.59657 9.22554 10.84482 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024031 B = 0.001568 C = 0.001518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.883809 B =17850.755281 C =18445.411788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.192 3.808 3 N -0.485 5.485 4 C 0.011 3.989 5 C -0.073 4.073 6 C -0.055 4.055 7 C 0.148 3.852 8 N -0.671 5.671 9 C 0.068 3.932 10 H 0.104 0.896 11 C -0.132 4.132 12 C 0.128 3.872 13 H 0.116 0.884 14 N -0.727 5.727 15 C 0.533 3.467 16 O -0.518 6.518 17 C -0.154 4.154 18 S -0.061 6.061 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 C -0.181 4.181 28 O -0.202 6.202 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.101 0.899 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.106 0.894 36 H 0.052 0.948 37 H 0.348 0.652 38 H 0.090 0.910 39 H 0.077 0.923 40 H 0.399 0.601 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.268 0.732 44 H 0.073 0.927 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.374 24.142 -14.471 32.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.015 4.015 3 N -0.216 5.216 4 C -0.109 4.109 5 C -0.130 4.130 6 C -0.108 4.108 7 C 0.019 3.981 8 N -0.302 5.302 9 C -0.043 4.043 10 H 0.122 0.878 11 C -0.171 4.171 12 C 0.021 3.979 13 H 0.133 0.867 14 N -0.380 5.380 15 C 0.319 3.681 16 O -0.392 6.392 17 C -0.305 4.305 18 S 0.166 5.834 19 C -0.684 4.684 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.205 1.205 27 C -0.222 4.222 28 O -0.090 6.090 29 H 0.111 0.889 30 H 0.107 0.893 31 H 0.120 0.880 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.101 0.899 35 H 0.124 0.876 36 H 0.070 0.930 37 H 0.167 0.833 38 H 0.109 0.891 39 H 0.096 0.904 40 H 0.233 0.767 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.078 0.922 44 H 0.092 0.908 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -14.099 24.239 -15.926 32.248 hybrid contribution -1.409 -1.144 2.257 2.897 sum -15.508 23.095 -13.669 30.995 Atomic orbital electron populations 1.20269 0.81282 1.05225 1.04693 1.26240 0.96398 0.78663 1.00214 1.70380 1.01815 1.30330 1.19059 1.21521 0.93240 0.92120 1.04063 1.20161 0.92154 0.98053 1.02674 1.22991 0.83248 0.94986 1.09601 1.20308 0.89840 0.96557 0.91429 1.60526 1.08321 1.49611 1.11773 1.22921 0.92115 0.90338 0.98882 0.87790 1.23450 1.00306 0.95286 0.98036 1.22203 0.98388 0.92158 0.85118 0.86651 1.45952 1.55238 1.23235 1.13576 1.20354 0.77721 0.80126 0.89885 1.90693 1.40454 1.62913 1.45188 1.23541 1.05990 1.04846 0.96122 1.85392 1.65360 1.15313 1.17376 1.22914 1.38414 1.09767 0.97260 0.90871 1.24997 0.94506 0.95504 0.98598 1.70031 1.31630 1.13487 1.35132 0.86112 0.78161 0.78609 0.82587 1.19620 1.20565 1.20548 1.24261 0.99495 0.97550 1.00872 1.84370 1.16690 1.37779 1.70131 0.88931 0.89277 0.88049 0.90930 0.90665 0.89858 0.87552 0.92984 0.83286 0.89146 0.90420 0.76718 0.89185 0.89270 0.92234 0.90845 0.89526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.24 10.51 36.00 0.38 0.13 16 2 C 0.19 1.71 8.34 -12.95 -0.11 1.60 16 3 N -0.49 -5.20 11.29 -7.36 -0.08 -5.29 16 4 C 0.01 0.11 7.11 -82.81 -0.59 -0.48 16 5 C -0.07 -0.51 10.04 36.01 0.36 -0.14 16 6 C -0.06 -0.50 6.90 -35.68 -0.25 -0.75 16 7 C 0.15 0.99 5.69 -4.98 -0.03 0.96 16 8 N -0.67 -4.72 6.61 -106.98 -0.71 -5.43 16 9 C 0.07 0.48 4.19 -66.76 -0.28 0.20 16 10 H 0.10 0.64 7.87 -51.93 -0.41 0.23 16 11 C -0.13 -1.03 7.62 -25.92 -0.20 -1.23 16 12 C 0.13 1.37 4.24 -67.12 -0.28 1.09 16 13 H 0.12 1.46 7.46 -51.93 -0.39 1.07 16 14 N -0.73 -9.30 5.36 -53.02 -0.28 -9.58 16 15 C 0.53 9.75 7.85 -10.99 -0.09 9.67 16 16 O -0.52 -11.59 15.46 5.55 0.09 -11.50 16 17 C -0.15 -3.09 6.16 36.00 0.22 -2.86 16 18 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 19 C -0.54 -15.24 9.50 30.94 0.29 -14.95 16 20 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 21 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -26.13 13.22 55.49 0.73 -25.40 16 23 Si 0.92 21.38 29.55 -169.99 -5.02 16.36 16 24 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 C -0.18 -1.62 7.51 -25.78 -0.19 -1.81 16 28 O -0.20 -1.97 10.77 5.38 0.06 -1.91 16 29 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 34 H 0.08 0.50 7.79 -51.93 -0.40 0.10 16 35 H 0.11 0.56 7.79 -51.93 -0.40 0.16 16 36 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.35 2.58 8.20 -39.29 -0.32 2.26 16 38 H 0.09 0.69 8.12 -51.93 -0.42 0.27 16 39 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.40 4.00 8.73 -40.82 -0.36 3.64 16 41 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 42 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 43 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.09 0.76 7.84 -51.93 -0.41 0.36 16 LS Contribution 396.64 15.07 5.98 5.98 Total: -1.00 -36.46 396.64 -9.19 -45.65 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -6.88 Total: 1.58 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: -0.85 Total: -6.58 kcal Atomic # 7 Polarization: -45.35 SS G_CDS: -0.34 Total: -45.69 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: 0.14 Total: -13.42 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.46 -9.19 -45.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690325451.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.295 kcal (2) G-P(sol) polarization free energy of solvation -36.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds