Wall clock time and date at job start Tue Mar 31 2020 22:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30259 * 125.61915 * 2 1 4 4 C 1.34474 * 108.70211 * 180.02562 * 3 2 1 5 5 C 1.50701 * 126.16541 * 179.97438 * 4 3 2 6 6 C 1.34327 * 107.66914 * 0.02562 * 4 3 2 7 7 C 1.50707 * 126.44217 * 179.97438 * 6 4 3 8 8 N 1.46895 * 109.46819 * 90.00138 * 7 6 4 9 9 C 1.46899 * 110.99736 * 179.97438 * 8 7 6 10 10 H 1.09000 * 112.90940 * 23.75151 * 9 8 7 11 11 C 1.53786 * 113.61541 * 154.99883 * 9 8 7 12 12 C 1.53781 * 87.17350 * 140.02506 * 11 9 8 13 13 H 1.08999 * 113.61567 * 89.07405 * 12 11 9 14 14 N 1.46500 * 113.61760 * 219.89426 * 12 11 9 15 15 C 1.34768 * 120.00289 * 205.00346 * 14 12 11 16 16 O 1.21284 * 119.99912 * 359.97438 * 15 14 12 17 17 C 1.50696 * 120.00132 * 179.97438 * 15 14 12 18 18 S 1.81002 * 109.47324 * 179.97438 * 17 15 14 19 19 C 1.76203 * 99.99950 * 180.02562 * 18 17 15 20 20 H 1.07995 * 120.00056 * 359.97438 * 19 18 17 21 21 C 1.38804 * 119.99890 * 180.02562 * 19 18 17 22 22 N 1.31629 * 119.99618 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00004 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47040 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47189 * 119.99760 * 23 21 19 26 26 H 1.48494 * 109.47158 * 239.99720 * 23 21 19 27 27 C 1.53781 * 87.08070 * 334.52830 * 12 11 9 28 28 O 1.33967 * 125.62419 * 180.34220 * 2 1 3 29 29 H 1.08990 * 109.47500 * 89.97438 * 1 2 3 30 30 H 1.09006 * 109.46740 * 209.97280 * 1 2 3 31 31 H 1.09007 * 109.47162 * 329.96840 * 1 2 3 32 32 H 1.09000 * 109.47325 * 270.00192 * 5 4 3 33 33 H 1.09011 * 109.47138 * 30.00351 * 5 4 3 34 34 H 1.08997 * 109.47294 * 149.99915 * 5 4 3 35 35 H 1.09000 * 109.46920 * 329.99895 * 7 6 4 36 36 H 1.08994 * 109.46921 * 210.00059 * 7 6 4 37 37 H 1.00896 * 111.00073 * 56.04841 * 8 7 6 38 38 H 1.09002 * 113.61357 * 25.43422 * 11 9 8 39 39 H 1.09002 * 113.61608 * 254.61584 * 11 9 8 40 40 H 0.97000 * 119.99380 * 24.99478 * 14 12 11 41 41 H 1.09000 * 109.47296 * 299.99988 * 17 15 14 42 42 H 1.09002 * 109.47445 * 59.99729 * 17 15 14 43 43 H 0.97005 * 119.99501 * 180.02562 * 22 21 19 44 44 H 1.09005 * 113.61471 * 139.98321 * 27 12 11 45 45 H 1.08996 * 113.61178 * 270.79663 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5521 0.6676 -0.0006 5 6 4.7570 1.5728 -0.0013 6 6 3.5698 -0.6756 -0.0015 7 6 4.7938 -1.5548 -0.0029 8 7 5.1923 -1.8414 1.3816 9 6 6.3847 -2.6986 1.4194 10 1 6.9844 -2.6317 0.5116 11 6 7.2056 -2.5554 2.7119 12 6 7.4023 -4.0799 2.6656 13 1 8.2797 -4.3899 2.0979 14 7 7.3186 -4.7227 3.9794 15 6 7.9400 -5.8990 4.1949 16 8 8.5681 -6.4257 3.3011 17 6 7.8543 -6.5598 5.5465 18 16 8.7839 -8.1127 5.5190 19 6 8.5207 -8.6563 7.1742 20 1 7.9280 -8.0588 7.8510 21 6 9.0760 -9.8519 7.6086 22 7 9.7988 -10.5799 6.7838 23 14 8.7975 -10.4279 9.3636 24 1 7.9570 -9.4369 10.0824 25 1 8.1093 -11.7438 9.3495 26 1 10.1053 -10.5607 10.0544 27 6 6.0934 -4.1454 1.8611 28 8 2.2873 -1.0889 -0.0065 29 1 -0.3634 0.0005 -1.0275 30 1 -0.3633 -0.8903 0.5134 31 1 -0.3634 0.8898 0.5144 32 1 5.0470 1.7909 -1.0291 33 1 4.5132 2.5027 0.5126 34 1 5.5823 1.0796 0.5122 35 1 5.6077 -1.0436 -0.5170 36 1 4.5693 -2.4892 -0.5172 37 1 4.4319 -2.2573 1.8980 38 1 6.6195 -2.2165 3.5661 39 1 8.1296 -1.9918 2.5821 40 1 6.8161 -4.3014 4.6941 41 1 8.2757 -5.8971 6.3024 42 1 6.8108 -6.7657 5.7849 43 1 10.1865 -11.4156 7.0873 44 1 6.1191 -4.8654 1.0431 45 1 5.2033 -4.2427 2.4827 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690325451.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:12 Heat of formation + Delta-G solvation = -29.352876 kcal Electronic energy + Delta-G solvation = -25373.930827 eV Core-core repulsion = 21518.501077 eV Total energy + Delta-G solvation = -3855.429751 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.35487 -41.12969 -39.53861 -36.39852 -36.09560 -34.59759 -34.36984 -33.04684 -30.72813 -30.19537 -28.65218 -27.67570 -26.63518 -25.19083 -23.86199 -22.76179 -21.72375 -21.62527 -20.91507 -19.76876 -18.05408 -17.84341 -17.62035 -17.45190 -16.88821 -16.72168 -16.45796 -16.19461 -15.72341 -15.36974 -15.18801 -14.90763 -14.58315 -14.39465 -14.17124 -14.01651 -13.83912 -13.73788 -13.55335 -13.44731 -13.37108 -13.17199 -13.15277 -12.91716 -12.83913 -12.63778 -12.18957 -11.99982 -11.88983 -11.83544 -11.67699 -11.49625 -11.16477 -10.89401 -10.27954 -10.04329 -9.62526 -9.37761 -8.67289 -8.35604 -6.13549 0.37732 1.27133 1.40936 1.47090 1.57941 1.60189 1.60525 1.68135 2.25837 2.32385 2.98702 3.06241 3.18982 3.32153 3.54622 3.66515 3.71772 3.87426 3.92439 3.95000 4.02364 4.17998 4.30429 4.36474 4.50299 4.52934 4.56053 4.60804 4.70104 4.76920 4.77928 4.81588 4.85930 4.93256 4.98467 5.07477 5.09402 5.12498 5.19497 5.41522 5.45359 5.58249 5.93386 6.19365 6.21978 6.53620 6.73896 7.05943 7.26338 8.73893 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024031 B = 0.001568 C = 0.001518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.883809 B =17850.755281 C =18445.411788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.187 3.813 3 N -0.519 5.519 4 C -0.008 4.008 5 C -0.070 4.070 6 C -0.065 4.065 7 C 0.151 3.849 8 N -0.669 5.669 9 C 0.083 3.917 10 H 0.118 0.882 11 C -0.117 4.117 12 C 0.112 3.888 13 H 0.095 0.905 14 N -0.701 5.701 15 C 0.534 3.466 16 O -0.567 6.567 17 C -0.131 4.131 18 S -0.152 6.152 19 C -0.547 4.547 20 H 0.083 0.917 21 C 0.013 3.987 22 N -0.911 5.911 23 Si 0.999 3.001 24 H -0.257 1.257 25 H -0.274 1.274 26 H -0.274 1.274 27 C -0.177 4.177 28 O -0.215 6.215 29 H 0.109 0.891 30 H 0.104 0.896 31 H 0.109 0.891 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.123 0.877 36 H 0.055 0.945 37 H 0.347 0.653 38 H 0.099 0.901 39 H 0.086 0.914 40 H 0.416 0.584 41 H 0.109 0.891 42 H 0.108 0.892 43 H 0.271 0.729 44 H 0.062 0.938 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.866 25.840 -13.542 33.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.020 4.020 3 N -0.251 5.251 4 C -0.128 4.128 5 C -0.127 4.127 6 C -0.117 4.117 7 C 0.022 3.978 8 N -0.300 5.300 9 C -0.027 4.027 10 H 0.136 0.864 11 C -0.155 4.155 12 C 0.006 3.994 13 H 0.113 0.887 14 N -0.354 5.354 15 C 0.320 3.680 16 O -0.445 6.445 17 C -0.282 4.282 18 S 0.075 5.925 19 C -0.694 4.694 20 H 0.101 0.899 21 C -0.192 4.192 22 N -0.548 5.548 23 Si 0.821 3.179 24 H -0.181 1.181 25 H -0.199 1.199 26 H -0.199 1.199 27 C -0.218 4.218 28 O -0.103 6.103 29 H 0.127 0.873 30 H 0.122 0.878 31 H 0.128 0.872 32 H 0.102 0.898 33 H 0.089 0.911 34 H 0.111 0.889 35 H 0.141 0.859 36 H 0.073 0.927 37 H 0.166 0.834 38 H 0.118 0.882 39 H 0.105 0.895 40 H 0.253 0.747 41 H 0.128 0.872 42 H 0.126 0.874 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -15.626 26.003 -14.996 33.841 hybrid contribution -1.035 -1.546 1.888 2.650 sum -16.661 24.457 -13.108 32.366 Atomic orbital electron populations 1.20516 0.78504 1.06343 1.06059 1.27152 0.97864 0.78167 0.98778 1.70393 1.02683 1.31395 1.20581 1.21982 0.93651 0.92927 1.04194 1.20212 0.91502 0.97478 1.03487 1.23344 0.83553 0.95194 1.09617 1.20403 0.89535 0.96535 0.91293 1.60515 1.08217 1.49237 1.12016 1.22815 0.92094 0.88680 0.99110 0.86445 1.23376 1.00954 0.92458 0.98752 1.22439 0.98774 0.94243 0.83930 0.88730 1.45735 1.53395 1.21191 1.15069 1.20085 0.77929 0.81355 0.88612 1.90682 1.43002 1.64607 1.46255 1.23391 1.05651 1.01112 0.98064 1.85564 1.67836 1.20733 1.18361 1.23247 1.38568 1.10306 0.97322 0.89934 1.26130 0.93901 0.95511 1.03608 1.70191 1.32833 1.14083 1.37656 0.84900 0.78398 0.78280 0.76331 1.18052 1.19925 1.19899 1.24244 0.98405 0.98847 1.00259 1.84377 1.17224 1.38309 1.70399 0.87309 0.87759 0.87245 0.89792 0.91120 0.88859 0.85877 0.92717 0.83429 0.88233 0.89544 0.74703 0.87235 0.87366 0.91985 0.91880 0.89050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.40 10.51 71.24 0.75 0.35 16 2 C 0.19 3.18 8.34 88.34 0.74 3.92 16 3 N -0.52 -10.87 11.29 -291.98 -3.30 -14.17 16 4 C -0.01 -0.14 7.11 41.26 0.29 0.16 16 5 C -0.07 -0.87 10.04 71.24 0.72 -0.16 16 6 C -0.06 -1.09 6.90 24.79 0.17 -0.91 16 7 C 0.15 1.73 5.69 85.56 0.49 2.21 16 8 N -0.67 -7.78 6.61 -492.38 -3.25 -11.04 16 9 C 0.08 0.97 4.19 45.53 0.19 1.16 16 10 H 0.12 1.12 7.87 -2.39 -0.02 1.10 16 11 C -0.12 -1.51 7.62 31.12 0.24 -1.27 16 12 C 0.11 2.25 4.24 45.52 0.19 2.44 16 13 H 0.09 2.38 7.46 -2.39 -0.02 2.36 16 14 N -0.70 -16.81 5.36 -440.05 -2.36 -19.17 16 15 C 0.53 19.37 7.85 87.66 0.69 20.05 16 16 O -0.57 -26.01 15.46 -3.04 -0.05 -26.06 16 17 C -0.13 -5.15 6.16 71.23 0.44 -4.71 16 18 S -0.15 -8.45 20.57 -56.49 -1.16 -9.61 16 19 C -0.55 -31.24 9.50 67.96 0.65 -30.60 16 20 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 21 C 0.01 0.75 5.49 84.86 0.47 1.22 16 22 N -0.91 -55.99 13.22 21.65 0.29 -55.70 16 23 Si 1.00 43.56 29.55 68.60 2.03 45.59 16 24 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 25 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 26 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 27 C -0.18 -2.88 7.51 31.21 0.23 -2.65 16 28 O -0.22 -4.01 10.77 -3.67 -0.04 -4.05 16 29 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.10 0.41 8.14 -2.38 -0.02 0.39 16 31 H 0.11 0.59 8.14 -2.38 -0.02 0.57 16 32 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 34 H 0.09 0.94 7.79 -2.39 -0.02 0.92 16 35 H 0.12 0.98 7.79 -2.39 -0.02 0.96 16 36 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.35 4.36 8.20 -89.70 -0.74 3.62 16 38 H 0.10 1.17 8.12 -2.39 -0.02 1.15 16 39 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.42 7.20 8.73 -92.71 -0.81 6.39 16 41 H 0.11 3.87 8.14 -2.39 -0.02 3.85 16 42 H 0.11 3.83 8.14 -2.39 -0.02 3.81 16 43 H 0.27 15.40 8.31 -92.70 -0.77 14.63 16 44 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 45 H 0.09 1.42 7.84 -2.39 -0.02 1.40 16 Total: -1.00 -81.96 396.64 -2.12 -84.08 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: -0.52 Total: 18.92 kcal Atomic # 6 Polarization: -15.03 SS G_CDS: 6.25 Total: -8.79 kcal Atomic # 7 Polarization: -91.46 SS G_CDS: -8.62 Total: -100.08 kcal Atomic # 8 Polarization: -30.02 SS G_CDS: -0.09 Total: -30.11 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 16 Polarization: -8.45 SS G_CDS: -1.16 Total: -9.61 kcal Total: -81.96 -2.12 -84.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690325451.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.726 kcal (2) G-P(sol) polarization free energy of solvation -81.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds