Wall clock time and date at job start Tue Mar 31 2020 23:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35444 * 126.78075 * 2 1 4 4 C 1.41375 * 103.98939 * 180.02562 * 3 2 1 5 5 C 1.50700 * 126.80464 * 179.97438 * 4 3 2 6 6 N 1.46901 * 109.46799 * 95.00367 * 5 4 3 7 7 C 1.46909 * 111.00108 * 180.02562 * 6 5 4 8 8 H 1.09007 * 112.84547 * 336.19320 * 7 6 5 9 9 C 1.54051 * 113.62091 * 107.50171 * 7 6 5 10 10 C 1.53785 * 86.98022 * 139.98060 * 9 7 6 11 11 H 1.09006 * 113.60792 * 219.98090 * 10 9 7 12 12 C 1.52997 * 113.61469 * 89.16505 * 10 9 7 13 13 N 1.46505 * 109.47212 * 85.85810 * 12 10 9 14 14 C 1.34771 * 119.99622 * 179.97438 * 13 12 10 15 15 O 1.21280 * 120.00597 * 0.02562 * 14 13 12 16 16 C 1.50701 * 119.99622 * 179.97438 * 14 13 12 17 17 S 1.81002 * 109.47156 * 180.02562 * 16 14 13 18 18 C 1.76204 * 100.00151 * 180.02562 * 17 16 14 19 19 H 1.08000 * 119.99845 * 359.97438 * 18 17 16 20 20 C 1.38796 * 120.00054 * 180.02562 * 18 17 16 21 21 N 1.31631 * 120.00100 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99948 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47220 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47248 * 120.00156 * 22 20 18 25 25 H 1.48501 * 109.47068 * 240.00173 * 22 20 18 26 26 C 1.53781 * 87.17639 * 334.56941 * 10 9 7 27 27 N 1.30177 * 106.39755 * 0.26250 * 4 3 2 28 28 O 1.20923 * 111.59966 * 359.53265 * 27 4 3 29 29 H 1.09007 * 109.46590 * 90.00705 * 1 2 3 30 30 H 1.08993 * 109.47502 * 210.00355 * 1 2 3 31 31 H 1.08996 * 109.46963 * 330.01088 * 1 2 3 32 32 H 1.08003 * 128.00365 * 0.04532 * 3 2 1 33 33 H 1.09005 * 109.47380 * 335.00586 * 5 4 3 34 34 H 1.09000 * 109.47751 * 215.00117 * 5 4 3 35 35 H 1.00904 * 111.00211 * 303.95264 * 6 5 4 36 36 H 1.09003 * 113.61037 * 25.47774 * 9 7 6 37 37 H 1.08993 * 113.69567 * 254.49866 * 9 7 6 38 38 H 1.09002 * 109.47153 * 325.85802 * 12 10 9 39 39 H 1.09001 * 109.46832 * 205.85993 * 12 10 9 40 40 H 0.96996 * 119.99606 * 0.02562 * 13 12 10 41 41 H 1.09001 * 109.47380 * 300.00190 * 16 14 13 42 42 H 1.09002 * 109.47060 * 60.00278 * 16 14 13 43 43 H 0.96999 * 120.00126 * 180.02562 * 21 20 18 44 44 H 1.08996 * 113.61287 * 140.01918 * 26 10 9 45 45 H 1.08997 * 113.61456 * 270.84850 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0848 0.0000 4 6 3.6214 0.5372 -0.0006 5 6 4.9211 1.2998 -0.0014 6 7 5.4052 1.4436 1.3781 7 6 6.6733 2.1844 1.4165 8 1 7.2232 2.1311 0.4768 9 6 6.5362 3.6143 1.9731 10 6 7.8674 3.3703 2.7035 11 1 7.8919 3.7779 3.7142 12 6 9.0980 3.7526 1.8787 13 7 9.3818 5.1788 2.0573 14 6 10.4284 5.7422 1.4221 15 8 11.1351 5.0688 0.7024 16 6 10.7200 7.2093 1.6054 17 16 12.1760 7.6616 0.6297 18 6 12.2852 9.3764 1.0199 19 1 11.5647 9.8252 1.6876 20 6 13.2966 10.1506 0.4683 21 7 14.1738 9.6039 -0.3467 22 14 13.4119 11.9686 0.8814 23 1 12.3140 12.3356 1.8116 24 1 14.7207 12.2480 1.5248 25 1 13.2923 12.7679 -0.3645 26 6 7.5331 1.8702 2.6522 27 7 3.4764 -0.7565 -0.0066 28 8 2.3095 -1.0737 -0.0005 29 1 -0.3633 -0.0001 -1.0278 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8901 0.5136 32 1 2.0345 2.1270 0.0007 33 1 4.7629 2.2870 -0.4357 34 1 5.6603 0.7577 -0.5912 35 1 4.7105 1.8862 1.9609 36 1 5.6869 3.7419 2.6443 37 1 6.5931 4.3892 1.2088 38 1 8.9067 3.5494 0.8250 39 1 9.9549 3.1671 2.2119 40 1 8.8168 5.7173 2.6332 41 1 9.8633 7.7946 1.2714 42 1 10.9107 7.4130 2.6591 43 1 14.8809 10.1448 -0.7319 44 1 8.3942 1.2381 2.4355 45 1 6.9570 1.5217 3.5093 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691486697.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:32 Heat of formation + Delta-G solvation = 38.612503 kcal Electronic energy + Delta-G solvation = -25068.359866 eV Core-core repulsion = 21215.877315 eV Total energy + Delta-G solvation = -3852.482551 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -45.31700 -40.15545 -38.79116 -36.17693 -34.37329 -33.89836 -32.78884 -32.43467 -29.78796 -28.28376 -27.48427 -26.01940 -25.76677 -25.34601 -23.41528 -22.81543 -20.68278 -20.37336 -19.19500 -18.04403 -17.77043 -17.58585 -16.68216 -16.29288 -16.13655 -15.60576 -15.12098 -14.83963 -14.81064 -14.72156 -14.12381 -13.97718 -13.90377 -13.78072 -13.72948 -13.21184 -13.05074 -12.80962 -12.71130 -12.60864 -12.46888 -12.19294 -11.70565 -11.56271 -11.31614 -11.07850 -11.02599 -10.78001 -10.75460 -10.70915 -10.44140 -9.81153 -9.74874 -9.39611 -9.08464 -8.87267 -8.83025 -8.23527 -6.50532 -6.22427 -3.92931 1.05585 1.76612 2.68418 3.02949 3.10304 3.20841 3.27600 3.32169 3.62497 3.69647 3.84338 4.03603 4.18443 4.19705 4.33262 4.43989 4.54748 4.59244 4.68114 4.81837 4.83201 4.95353 5.04780 5.06297 5.12846 5.17250 5.21196 5.28083 5.35690 5.38284 5.43568 5.58370 5.60697 5.66081 5.71768 5.79395 5.84555 5.90057 6.02673 6.13383 6.55900 6.62703 6.88408 7.59158 7.71671 7.90204 8.34737 8.61848 9.23027 10.85090 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024969 B = 0.001455 C = 0.001422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.117858 B =19240.875665 C =19679.723296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.034 4.034 3 C -0.234 4.234 4 C 0.021 3.979 5 C 0.135 3.865 6 N -0.672 5.672 7 C 0.065 3.935 8 H 0.102 0.898 9 C -0.164 4.164 10 C -0.122 4.122 11 H 0.086 0.914 12 C 0.139 3.861 13 N -0.738 5.738 14 C 0.531 3.469 15 O -0.518 6.518 16 C -0.153 4.153 17 S -0.061 6.061 18 C -0.535 4.535 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C -0.116 4.116 27 N -0.347 5.347 28 O 0.100 5.900 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.170 0.830 33 H 0.057 0.943 34 H 0.091 0.909 35 H 0.344 0.656 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.398 0.602 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.268 0.732 44 H 0.074 0.926 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.105 -17.299 5.041 34.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.097 4.097 3 C -0.255 4.255 4 C -0.139 4.139 5 C 0.006 3.994 6 N -0.303 5.303 7 C -0.045 4.045 8 H 0.120 0.880 9 C -0.203 4.203 10 C -0.142 4.142 11 H 0.104 0.896 12 C 0.015 3.985 13 N -0.392 5.392 14 C 0.317 3.683 15 O -0.392 6.392 16 C -0.304 4.304 17 S 0.166 5.834 18 C -0.684 4.684 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.205 1.205 25 H -0.206 1.206 26 C -0.155 4.155 27 N -0.049 5.049 28 O 0.032 5.968 29 H 0.107 0.893 30 H 0.102 0.898 31 H 0.110 0.890 32 H 0.187 0.813 33 H 0.075 0.925 34 H 0.110 0.890 35 H 0.163 0.837 36 H 0.103 0.897 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.231 0.769 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.093 0.907 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -26.599 -20.077 3.693 33.529 hybrid contribution -1.681 3.958 1.219 4.469 sum -28.279 -16.119 4.912 32.919 Atomic orbital electron populations 1.20348 0.84004 1.04714 1.04175 1.24526 0.96445 0.86227 1.02519 1.22442 0.91472 1.01010 1.10615 1.23425 0.96838 0.90135 1.03474 1.20229 0.90431 0.97247 0.91503 1.60411 1.05827 1.55186 1.08864 1.23222 0.90795 0.91192 0.99244 0.88020 1.23785 0.97827 0.98270 1.00433 1.22430 0.94016 0.97879 0.99841 0.89564 1.21072 0.95950 0.82043 0.99477 1.45982 1.32013 1.10183 1.51053 1.20309 0.79506 0.89496 0.79028 1.90705 1.47666 1.63902 1.36972 1.23529 1.06666 0.94126 1.06066 1.85409 1.28898 1.09859 1.59277 1.22911 1.17339 0.94206 1.33896 0.90887 1.24991 0.94685 0.99348 0.94553 1.70028 1.14893 1.36341 1.29013 0.86116 0.78170 0.82895 0.78306 1.19631 1.20548 1.20572 1.23031 0.99437 0.94750 0.98235 1.73889 0.96529 1.16425 1.18092 1.84860 1.11413 1.33260 1.67255 0.89348 0.89751 0.89033 0.81287 0.92490 0.89043 0.83687 0.89748 0.90894 0.91601 0.91235 0.76859 0.89292 0.89237 0.92230 0.90713 0.89273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.16 10.45 36.01 0.38 0.22 16 2 C -0.03 -0.21 7.49 -35.31 -0.26 -0.47 16 3 C -0.23 -1.53 11.05 -39.39 -0.44 -1.96 16 4 C 0.02 0.18 6.84 -82.10 -0.56 -0.38 16 5 C 0.14 1.05 6.12 -4.98 -0.03 1.02 16 6 N -0.67 -5.15 6.61 -106.97 -0.71 -5.86 16 7 C 0.07 0.49 3.84 -66.75 -0.26 0.23 16 8 H 0.10 0.83 7.42 -51.93 -0.39 0.45 16 9 C -0.16 -1.13 7.26 -25.77 -0.19 -1.31 16 10 C -0.12 -0.95 3.93 -89.81 -0.35 -1.31 16 11 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 12 C 0.14 1.56 5.35 -4.04 -0.02 1.54 16 13 N -0.74 -9.61 5.56 -60.29 -0.33 -9.95 16 14 C 0.53 9.87 7.85 -10.99 -0.09 9.78 16 15 O -0.52 -11.83 15.86 5.56 0.09 -11.74 16 16 C -0.15 -3.08 6.16 36.01 0.22 -2.86 16 17 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 18 C -0.54 -15.26 9.50 30.94 0.29 -14.97 16 19 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.19 13.22 55.49 0.73 -25.46 16 22 Si 0.92 21.38 29.55 -169.99 -5.02 16.35 16 23 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 26 C -0.12 -0.88 7.47 -25.92 -0.19 -1.07 16 27 N -0.35 -3.76 12.07 33.42 0.40 -3.35 16 28 O 0.10 0.92 11.20 17.16 0.19 1.11 16 29 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 30 H 0.08 0.12 8.14 -51.93 -0.42 -0.31 16 31 H 0.09 0.07 8.14 -51.93 -0.42 -0.36 16 32 H 0.17 0.69 8.06 -52.48 -0.42 0.26 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.09 0.78 8.13 -51.93 -0.42 0.35 16 35 H 0.34 2.29 8.19 -39.29 -0.32 1.97 16 36 H 0.08 0.49 7.83 -51.93 -0.41 0.08 16 37 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 38 H 0.07 0.80 7.37 -51.93 -0.38 0.42 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.40 4.02 8.47 -40.82 -0.35 3.67 16 41 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 42 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 43 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 44 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 45 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 395.83 15.07 5.97 5.97 Total: -1.00 -36.18 395.83 -9.37 -45.54 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -6.88 Total: 0.81 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: -1.59 Total: -9.54 kcal Atomic # 7 Polarization: -44.71 SS G_CDS: 0.10 Total: -44.61 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.28 Total: -10.63 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.18 -9.37 -45.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691486697.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.154 kcal (2) G-P(sol) polarization free energy of solvation -36.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds