Wall clock time and date at job start Tue Mar 31 2020 23:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35444 * 126.78075 * 2 1 4 4 C 1.41375 * 103.98939 * 180.02562 * 3 2 1 5 5 C 1.50700 * 126.80464 * 179.97438 * 4 3 2 6 6 N 1.46901 * 109.46799 * 95.00367 * 5 4 3 7 7 C 1.46909 * 111.00108 * 180.02562 * 6 5 4 8 8 H 1.09007 * 112.84547 * 336.19320 * 7 6 5 9 9 C 1.54051 * 113.62091 * 107.50171 * 7 6 5 10 10 C 1.53785 * 86.98022 * 139.98060 * 9 7 6 11 11 H 1.09006 * 113.60792 * 219.98090 * 10 9 7 12 12 C 1.52997 * 113.61469 * 89.16505 * 10 9 7 13 13 N 1.46505 * 109.47212 * 85.85810 * 12 10 9 14 14 C 1.34771 * 119.99622 * 179.97438 * 13 12 10 15 15 O 1.21280 * 120.00597 * 0.02562 * 14 13 12 16 16 C 1.50701 * 119.99622 * 179.97438 * 14 13 12 17 17 S 1.81002 * 109.47156 * 180.02562 * 16 14 13 18 18 C 1.76204 * 100.00151 * 180.02562 * 17 16 14 19 19 H 1.08000 * 119.99845 * 359.97438 * 18 17 16 20 20 C 1.38796 * 120.00054 * 180.02562 * 18 17 16 21 21 N 1.31631 * 120.00100 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99948 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47220 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47248 * 120.00156 * 22 20 18 25 25 H 1.48501 * 109.47068 * 240.00173 * 22 20 18 26 26 C 1.53781 * 87.17639 * 334.56941 * 10 9 7 27 27 N 1.30177 * 106.39755 * 0.26250 * 4 3 2 28 28 O 1.20923 * 111.59966 * 359.53265 * 27 4 3 29 29 H 1.09007 * 109.46590 * 90.00705 * 1 2 3 30 30 H 1.08993 * 109.47502 * 210.00355 * 1 2 3 31 31 H 1.08996 * 109.46963 * 330.01088 * 1 2 3 32 32 H 1.08003 * 128.00365 * 0.04532 * 3 2 1 33 33 H 1.09005 * 109.47380 * 335.00586 * 5 4 3 34 34 H 1.09000 * 109.47751 * 215.00117 * 5 4 3 35 35 H 1.00904 * 111.00211 * 303.95264 * 6 5 4 36 36 H 1.09003 * 113.61037 * 25.47774 * 9 7 6 37 37 H 1.08993 * 113.69567 * 254.49866 * 9 7 6 38 38 H 1.09002 * 109.47153 * 325.85802 * 12 10 9 39 39 H 1.09001 * 109.46832 * 205.85993 * 12 10 9 40 40 H 0.96996 * 119.99606 * 0.02562 * 13 12 10 41 41 H 1.09001 * 109.47380 * 300.00190 * 16 14 13 42 42 H 1.09002 * 109.47060 * 60.00278 * 16 14 13 43 43 H 0.96999 * 120.00126 * 180.02562 * 21 20 18 44 44 H 1.08996 * 113.61287 * 140.01918 * 26 10 9 45 45 H 1.08997 * 113.61456 * 270.84850 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0848 0.0000 4 6 3.6214 0.5372 -0.0006 5 6 4.9211 1.2998 -0.0014 6 7 5.4052 1.4436 1.3781 7 6 6.6733 2.1844 1.4165 8 1 7.2232 2.1311 0.4768 9 6 6.5362 3.6143 1.9731 10 6 7.8674 3.3703 2.7035 11 1 7.8919 3.7779 3.7142 12 6 9.0980 3.7526 1.8787 13 7 9.3818 5.1788 2.0573 14 6 10.4284 5.7422 1.4221 15 8 11.1351 5.0688 0.7024 16 6 10.7200 7.2093 1.6054 17 16 12.1760 7.6616 0.6297 18 6 12.2852 9.3764 1.0199 19 1 11.5647 9.8252 1.6876 20 6 13.2966 10.1506 0.4683 21 7 14.1738 9.6039 -0.3467 22 14 13.4119 11.9686 0.8814 23 1 12.3140 12.3356 1.8116 24 1 14.7207 12.2480 1.5248 25 1 13.2923 12.7679 -0.3645 26 6 7.5331 1.8702 2.6522 27 7 3.4764 -0.7565 -0.0066 28 8 2.3095 -1.0737 -0.0005 29 1 -0.3633 -0.0001 -1.0278 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8901 0.5136 32 1 2.0345 2.1270 0.0007 33 1 4.7629 2.2870 -0.4357 34 1 5.6603 0.7577 -0.5912 35 1 4.7105 1.8862 1.9609 36 1 5.6869 3.7419 2.6443 37 1 6.5931 4.3892 1.2088 38 1 8.9067 3.5494 0.8250 39 1 9.9549 3.1671 2.2119 40 1 8.8168 5.7173 2.6332 41 1 9.8633 7.7946 1.2714 42 1 10.9107 7.4130 2.6591 43 1 14.8809 10.1448 -0.7319 44 1 8.3942 1.2381 2.4355 45 1 6.9570 1.5217 3.5093 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691486697.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:32 Heat of formation + Delta-G solvation = 12.327124 kcal Electronic energy + Delta-G solvation = -25069.499685 eV Core-core repulsion = 21215.877315 eV Total energy + Delta-G solvation = -3853.622370 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.91513 -41.04412 -40.02318 -36.86820 -35.40621 -34.58667 -34.43745 -33.49040 -31.24260 -28.68569 -28.34656 -27.64821 -26.61624 -26.43628 -24.00503 -23.50237 -21.77996 -21.23976 -20.13949 -19.52739 -18.66748 -18.13893 -17.74307 -17.55455 -16.88922 -16.86019 -16.71835 -16.35791 -15.74781 -15.39140 -15.32549 -14.86785 -14.72349 -14.50199 -14.39564 -14.37042 -13.94528 -13.76040 -13.46383 -13.26563 -13.25703 -13.16124 -13.08284 -12.91755 -12.70742 -12.61006 -12.19668 -11.94159 -11.69945 -11.42413 -11.34216 -11.16051 -11.09997 -10.89761 -10.27130 -10.24919 -10.10266 -9.40721 -8.67126 -8.34943 -6.13177 0.53968 1.21097 1.27236 1.41526 1.47495 1.58462 1.61372 2.25657 2.26041 2.29947 2.99474 3.06272 3.29306 3.31951 3.52833 3.54337 3.69302 3.75088 3.94092 4.04626 4.12835 4.24755 4.29103 4.30761 4.32737 4.45653 4.51079 4.59225 4.63666 4.69575 4.74318 4.82618 4.87370 4.93026 5.01762 5.02539 5.10967 5.16820 5.27257 5.32225 5.42022 5.47916 5.96295 6.19941 6.36848 6.52156 7.06550 7.25310 7.34355 8.74611 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024969 B = 0.001455 C = 0.001422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.117858 B =19240.875665 C =19679.723296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.030 4.030 3 C -0.239 4.239 4 C 0.011 3.989 5 C 0.138 3.862 6 N -0.677 5.677 7 C 0.064 3.936 8 H 0.090 0.910 9 C -0.150 4.150 10 C -0.112 4.112 11 H 0.103 0.897 12 C 0.138 3.862 13 N -0.709 5.709 14 C 0.532 3.468 15 O -0.569 6.569 16 C -0.129 4.129 17 S -0.155 6.155 18 C -0.546 4.546 19 H 0.084 0.916 20 C 0.013 3.987 21 N -0.912 5.912 22 Si 1.000 3.000 23 H -0.256 1.256 24 H -0.274 1.274 25 H -0.274 1.274 26 C -0.113 4.113 27 N -0.390 5.390 28 O 0.082 5.918 29 H 0.102 0.898 30 H 0.092 0.908 31 H 0.111 0.889 32 H 0.195 0.805 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.352 0.648 36 H 0.105 0.895 37 H 0.066 0.934 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.417 0.583 41 H 0.111 0.889 42 H 0.110 0.890 43 H 0.271 0.729 44 H 0.064 0.936 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.110 -15.695 6.899 36.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.093 4.093 3 C -0.260 4.260 4 C -0.148 4.148 5 C 0.009 3.991 6 N -0.309 5.309 7 C -0.046 4.046 8 H 0.108 0.892 9 C -0.189 4.189 10 C -0.132 4.132 11 H 0.121 0.879 12 C 0.014 3.986 13 N -0.363 5.363 14 C 0.317 3.683 15 O -0.447 6.447 16 C -0.280 4.280 17 S 0.072 5.928 18 C -0.693 4.693 19 H 0.102 0.898 20 C -0.191 4.191 21 N -0.549 5.549 22 Si 0.821 3.179 23 H -0.179 1.179 24 H -0.200 1.200 25 H -0.200 1.200 26 C -0.152 4.152 27 N -0.096 5.096 28 O 0.017 5.983 29 H 0.120 0.880 30 H 0.110 0.890 31 H 0.130 0.870 32 H 0.212 0.788 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.172 0.828 36 H 0.123 0.877 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.254 0.746 41 H 0.129 0.871 42 H 0.129 0.871 43 H 0.080 0.920 44 H 0.083 0.917 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -29.678 -18.487 5.594 35.410 hybrid contribution -0.871 3.340 0.666 3.515 sum -30.549 -15.147 6.260 34.668 Atomic orbital electron populations 1.20576 0.81031 1.06088 1.05419 1.25313 0.97991 0.85366 1.00665 1.22770 0.90331 1.02322 1.10619 1.23742 0.98083 0.89945 1.03045 1.20197 0.89796 0.97625 0.91525 1.60357 1.06063 1.55513 1.08956 1.23180 0.90722 0.91944 0.98767 0.89238 1.23740 0.97704 0.97267 1.00238 1.22282 0.92748 0.98125 1.00007 0.87874 1.21178 0.97273 0.80408 0.99737 1.45711 1.30092 1.11103 1.49410 1.20092 0.80335 0.88755 0.79080 1.90695 1.49842 1.64656 1.39522 1.23370 1.03492 0.95544 1.05594 1.85610 1.34059 1.10995 1.62096 1.23244 1.17795 0.94229 1.34066 0.89830 1.26131 0.94041 1.04852 0.94111 1.70193 1.15769 1.38521 1.30372 0.84896 0.78657 0.75924 0.78404 1.17937 1.19968 1.19959 1.23031 0.99203 0.94362 0.98602 1.73880 0.97615 1.17746 1.20332 1.84805 1.11351 1.34488 1.67693 0.87994 0.88967 0.87026 0.78752 0.90967 0.90616 0.82827 0.87688 0.91475 0.92575 0.92433 0.74600 0.87127 0.87148 0.92006 0.91681 0.88288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.14 10.45 71.24 0.74 0.61 16 2 C -0.03 -0.33 7.49 25.04 0.19 -0.15 16 3 C -0.24 -2.76 11.05 22.40 0.25 -2.51 16 4 C 0.01 0.19 6.84 43.58 0.30 0.48 16 5 C 0.14 2.09 6.12 85.56 0.52 2.61 16 6 N -0.68 -9.65 6.61 -492.34 -3.25 -12.90 16 7 C 0.06 0.88 3.84 45.53 0.17 1.06 16 8 H 0.09 1.46 7.42 -2.38 -0.02 1.45 16 9 C -0.15 -1.66 7.26 31.21 0.23 -1.44 16 10 C -0.11 -1.49 3.93 -10.27 -0.04 -1.53 16 11 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 12 C 0.14 2.95 5.35 86.38 0.46 3.41 16 13 N -0.71 -17.14 5.56 -463.06 -2.57 -19.71 16 14 C 0.53 19.45 7.85 87.66 0.69 20.14 16 15 O -0.57 -26.57 15.86 -3.03 -0.05 -26.62 16 16 C -0.13 -5.04 6.16 71.24 0.44 -4.60 16 17 S -0.15 -8.61 20.57 -56.49 -1.16 -9.77 16 18 C -0.55 -31.08 9.50 67.95 0.65 -30.43 16 19 H 0.08 4.41 7.80 -2.91 -0.02 4.38 16 20 C 0.01 0.76 5.49 84.86 0.47 1.22 16 21 N -0.91 -56.12 13.22 21.65 0.29 -55.84 16 22 Si 1.00 43.41 29.55 68.60 2.03 45.44 16 23 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 24 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 25 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 26 C -0.11 -1.55 7.47 31.12 0.23 -1.32 16 27 N -0.39 -8.67 12.07 -49.57 -0.60 -9.27 16 28 O 0.08 1.52 11.20 71.57 0.80 2.32 16 29 H 0.10 -0.03 8.14 -2.38 -0.02 -0.05 16 30 H 0.09 0.06 8.14 -2.39 -0.02 0.04 16 31 H 0.11 -0.20 8.14 -2.39 -0.02 -0.22 16 32 H 0.20 1.05 8.06 -2.91 -0.02 1.02 16 33 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 34 H 0.08 1.36 8.13 -2.39 -0.02 1.34 16 35 H 0.35 3.98 8.19 -89.69 -0.73 3.25 16 36 H 0.10 0.80 7.83 -2.39 -0.02 0.78 16 37 H 0.07 0.87 8.10 -2.39 -0.02 0.85 16 38 H 0.06 1.35 7.37 -2.39 -0.02 1.33 16 39 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.42 7.03 8.47 -92.71 -0.79 6.24 16 41 H 0.11 3.85 8.14 -2.40 -0.02 3.83 16 42 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 43 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 44 H 0.06 1.03 8.10 -2.39 -0.02 1.01 16 45 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -82.16 395.83 0.27 -81.89 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: -0.50 Total: 16.90 kcal Atomic # 6 Polarization: -17.73 SS G_CDS: 5.29 Total: -12.43 kcal Atomic # 7 Polarization: -91.58 SS G_CDS: -6.14 Total: -97.72 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: 0.75 Total: -24.30 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Atomic # 16 Polarization: -8.61 SS G_CDS: -1.16 Total: -9.77 kcal Total: -82.16 0.27 -81.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691486697.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.214 kcal (2) G-P(sol) polarization free energy of solvation -82.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds