Wall clock time and date at job start Tue Mar 31 2020 22:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30258 * 125.61652 * 2 1 4 4 C 1.34480 * 108.69871 * 180.25898 * 3 2 1 5 5 C 1.34330 * 107.66962 * 0.02562 * 4 3 2 6 6 C 1.50697 * 126.44375 * 179.97438 * 5 4 3 7 7 N 1.46898 * 109.47012 * 89.99350 * 6 5 4 8 8 C 1.46903 * 110.99765 * 175.26671 * 7 6 5 9 9 C 1.53003 * 112.85051 * 290.68302 * 8 7 6 10 10 N 1.46498 * 109.47113 * 312.17601 * 9 8 7 11 11 C 1.34773 * 119.99835 * 174.70460 * 10 9 8 12 12 O 1.21280 * 120.00103 * 359.97438 * 11 10 9 13 13 C 1.50696 * 120.00059 * 180.02562 * 11 10 9 14 14 S 1.80995 * 109.47484 * 180.02562 * 13 11 10 15 15 C 1.76201 * 100.00486 * 179.97438 * 14 13 11 16 16 H 1.08010 * 119.99486 * 0.02562 * 15 14 13 17 17 C 1.38797 * 120.00434 * 179.97438 * 15 14 13 18 18 N 1.31628 * 119.99772 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00110 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.47160 * 90.00094 * 19 17 15 21 21 H 1.48494 * 109.47248 * 209.99920 * 19 17 15 22 22 H 1.48500 * 109.47420 * 330.00238 * 19 17 15 23 23 C 1.53782 * 113.61200 * 159.37698 * 8 7 6 24 24 C 1.53787 * 87.08187 * 220.01963 * 23 8 7 25 25 C 1.53781 * 113.61469 * 61.88202 * 8 7 6 26 26 O 1.33969 * 125.62008 * 180.30741 * 2 1 3 27 27 H 1.09001 * 109.46991 * 269.69093 * 1 2 3 28 28 H 1.09002 * 109.46904 * 29.68978 * 1 2 3 29 29 H 1.08998 * 109.47265 * 149.69245 * 1 2 3 30 30 H 1.07997 * 126.16272 * 180.02562 * 4 3 2 31 31 H 1.08991 * 109.47243 * 209.99780 * 6 5 4 32 32 H 1.09001 * 109.46735 * 329.99676 * 6 5 4 33 33 H 1.00892 * 111.00340 * 299.22136 * 7 6 5 34 34 H 1.08999 * 109.47245 * 72.17962 * 9 8 7 35 35 H 1.08998 * 109.47099 * 192.17825 * 9 8 7 36 36 H 0.96998 * 120.00112 * 354.70688 * 10 9 8 37 37 H 1.09011 * 109.47283 * 299.99977 * 13 11 10 38 38 H 1.09002 * 109.47436 * 59.99606 * 13 11 10 39 39 H 0.96997 * 119.99998 * 179.97438 * 18 17 15 40 40 H 1.08999 * 113.61853 * 334.56609 * 23 8 7 41 41 H 1.09003 * 113.61563 * 105.47544 * 23 8 7 42 42 H 1.09000 * 113.61392 * 270.89086 * 24 23 8 43 43 H 1.08992 * 113.61550 * 139.97913 * 24 23 8 44 44 H 1.09005 * 113.61393 * 254.52856 * 25 8 7 45 45 H 1.09001 * 113.61521 * 25.42707 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5522 0.6676 -0.0058 5 6 3.5698 -0.6756 -0.0099 6 6 4.7937 -1.5548 -0.0175 7 7 5.1970 -1.8446 1.3650 8 6 6.3202 -2.7908 1.3984 9 6 5.9240 -4.1993 0.9509 10 7 4.6945 -4.6022 1.6381 11 6 4.0961 -5.7674 1.3208 12 8 4.5753 -6.4821 0.4661 13 6 2.8311 -6.1816 2.0271 14 16 2.2772 -7.7805 1.3848 15 6 0.8266 -8.0152 2.3572 16 1 0.5367 -7.2697 3.0831 17 6 0.0560 -9.1573 2.1897 18 7 0.4085 -10.0650 1.3040 19 14 -1.4814 -9.4063 3.2212 20 1 -2.6494 -8.8161 2.5192 21 1 -1.7097 -10.8592 3.4266 22 1 -1.3073 -8.7416 4.5376 23 6 7.1118 -2.7609 2.7164 24 6 8.3839 -2.9055 1.8644 25 6 7.5918 -2.2619 0.7141 26 8 2.2873 -1.0890 -0.0058 27 1 -0.3633 -0.0055 1.0277 28 1 -0.3633 0.8928 -0.5090 29 1 -0.3634 -0.8872 -0.5186 30 1 4.4156 1.3163 -0.0068 31 1 4.5675 -2.4880 -0.5332 32 1 5.6059 -1.0424 -0.5331 33 1 5.4244 -0.9958 1.8608 34 1 5.7568 -4.2048 -0.1262 35 1 6.7238 -4.8974 1.1980 36 1 4.3111 -4.0304 2.3213 37 1 3.0234 -6.2671 3.0967 38 1 2.0575 -5.4331 1.8559 39 1 -0.1298 -10.8634 1.1872 40 1 7.0456 -1.8095 3.2442 41 1 6.9186 -3.6182 3.3614 42 1 8.6666 -3.9408 1.6740 43 1 9.2163 -2.2960 2.2158 44 1 7.7859 -2.7162 -0.2575 45 1 7.6567 -1.1740 0.6943 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700126890.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:28 Heat of formation + Delta-G solvation = 6.998486 kcal Electronic energy + Delta-G solvation = -26776.367490 eV Core-core repulsion = 22922.514052 eV Total energy + Delta-G solvation = -3853.853438 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.49860 -40.51440 -38.65594 -35.11070 -34.91543 -33.97374 -32.39735 -32.06020 -29.82118 -28.80030 -26.68663 -26.26853 -25.42351 -24.95246 -22.83240 -22.29364 -21.17812 -20.21002 -19.22440 -17.74588 -17.39752 -17.06522 -16.58099 -16.27060 -16.02055 -15.18257 -15.07391 -14.90259 -14.79354 -14.76496 -14.26612 -13.90521 -13.75225 -13.42506 -13.29952 -13.10978 -12.97610 -12.72867 -12.69075 -12.58103 -12.41159 -11.96565 -11.67694 -11.48178 -11.42989 -11.03920 -11.02144 -10.99053 -10.73882 -10.71934 -10.66253 -9.78110 -9.34959 -9.03957 -9.02025 -8.80484 -8.75379 -8.18995 -6.45679 -6.18614 -3.88433 1.19968 2.40571 2.47597 3.07222 3.18705 3.24303 3.29664 3.33862 3.61744 3.82706 3.90900 4.08694 4.21464 4.23718 4.30585 4.42699 4.52548 4.70505 4.77184 5.02047 5.05499 5.13926 5.16480 5.21817 5.23627 5.25705 5.29724 5.34049 5.45562 5.53909 5.59021 5.64254 5.64927 5.70328 5.81731 5.83709 5.91240 5.97159 6.10277 6.22031 6.44302 6.74217 6.88903 7.52894 7.62826 7.87627 8.38586 8.71572 9.26762 10.88861 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008859 B = 0.003112 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3159.712162 B = 8994.869101 C =11558.381906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.193 3.807 3 N -0.489 5.489 4 C -0.038 4.038 5 C -0.036 4.036 6 C 0.143 3.857 7 N -0.670 5.670 8 C 0.085 3.915 9 C 0.153 3.847 10 N -0.724 5.724 11 C 0.531 3.469 12 O -0.524 6.524 13 C -0.151 4.151 14 S -0.061 6.061 15 C -0.534 4.534 16 H 0.072 0.928 17 C 0.073 3.927 18 N -0.868 5.868 19 Si 0.918 3.082 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.272 1.272 23 C -0.130 4.130 24 C -0.139 4.139 25 C -0.167 4.167 26 O -0.187 6.187 27 H 0.094 0.906 28 H 0.099 0.901 29 H 0.091 0.909 30 H 0.179 0.821 31 H 0.096 0.904 32 H 0.069 0.931 33 H 0.348 0.652 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.405 0.595 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.268 0.732 40 H 0.085 0.915 41 H 0.079 0.921 42 H 0.086 0.914 43 H 0.071 0.929 44 H 0.074 0.926 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.622 23.375 0.024 26.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.013 4.013 3 N -0.219 5.219 4 C -0.178 4.178 5 C -0.090 4.090 6 C 0.014 3.986 7 N -0.301 5.301 8 C -0.007 4.007 9 C 0.027 3.973 10 N -0.379 5.379 11 C 0.317 3.683 12 O -0.399 6.399 13 C -0.302 4.302 14 S 0.165 5.835 15 C -0.682 4.682 16 H 0.090 0.910 17 C -0.136 4.136 18 N -0.504 5.504 19 Si 0.744 3.256 20 H -0.203 1.203 21 H -0.208 1.208 22 H -0.197 1.197 23 C -0.168 4.168 24 C -0.177 4.177 25 C -0.207 4.207 26 O -0.073 6.073 27 H 0.112 0.888 28 H 0.118 0.882 29 H 0.110 0.890 30 H 0.196 0.804 31 H 0.114 0.886 32 H 0.087 0.913 33 H 0.167 0.833 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.241 0.759 37 H 0.106 0.894 38 H 0.107 0.893 39 H 0.078 0.922 40 H 0.104 0.896 41 H 0.097 0.903 42 H 0.105 0.895 43 H 0.090 0.910 44 H 0.093 0.907 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 11.631 22.074 -1.396 24.990 hybrid contribution -0.656 0.978 1.673 2.046 sum 10.975 23.052 0.277 25.533 Atomic orbital electron populations 1.20297 0.81304 1.05221 1.04917 1.26351 0.96588 0.78639 0.99761 1.70445 1.01964 1.30365 1.19167 1.23018 0.95231 0.92827 1.06738 1.23213 0.83890 0.94744 1.07173 1.20187 0.88884 0.98476 0.91022 1.60128 1.39040 1.17272 1.13692 1.22612 0.87354 0.92954 0.97762 1.20931 0.87787 0.91333 0.97210 1.45761 1.26890 1.22381 1.42855 1.20290 0.85113 0.80230 0.82667 1.90691 1.64960 1.52271 1.32025 1.23501 0.96977 1.06372 1.03300 1.85356 1.30764 1.14879 1.52463 1.22877 1.11100 1.09025 1.25235 0.90972 1.24983 0.98092 0.94890 0.95614 1.70020 1.38424 1.09295 1.32627 0.86180 0.81804 0.77533 0.80056 1.20285 1.20781 1.19693 1.23128 0.94851 1.03122 0.95689 1.22762 0.96768 1.01691 0.96431 1.23623 0.96947 1.00781 0.99351 1.84471 1.16456 1.37462 1.68946 0.88752 0.88214 0.89007 0.80354 0.88588 0.91308 0.83255 0.91504 0.91019 0.75950 0.89386 0.89315 0.92239 0.89631 0.90270 0.89505 0.91033 0.90695 0.89770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.45 10.51 36.01 0.38 -0.07 16 2 C 0.19 2.21 8.34 -12.94 -0.11 2.10 16 3 N -0.49 -5.92 11.29 -11.10 -0.13 -6.05 16 4 C -0.04 -0.39 11.80 -17.77 -0.21 -0.60 16 5 C -0.04 -0.38 6.94 -35.69 -0.25 -0.63 16 6 C 0.14 1.21 5.85 -4.98 -0.03 1.18 16 7 N -0.67 -5.21 5.76 -100.40 -0.58 -5.78 16 8 C 0.08 0.64 0.80 -130.79 -0.10 0.54 16 9 C 0.15 1.73 4.63 -4.04 -0.02 1.71 16 10 N -0.72 -10.01 5.38 -60.30 -0.32 -10.33 16 11 C 0.53 10.15 7.85 -10.99 -0.09 10.06 16 12 O -0.52 -12.04 15.86 5.56 0.09 -11.95 16 13 C -0.15 -3.15 6.16 36.00 0.22 -2.92 16 14 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 15 C -0.53 -15.41 9.50 30.94 0.29 -15.12 16 16 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16 17 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 18 N -0.87 -26.38 13.22 55.49 0.73 -25.65 16 19 Si 0.92 21.57 29.55 -169.99 -5.02 16.55 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 23 C -0.13 -0.87 7.33 -25.92 -0.19 -1.06 16 24 C -0.14 -0.84 7.73 -25.92 -0.20 -1.04 16 25 C -0.17 -1.00 6.44 -25.92 -0.17 -1.17 16 26 O -0.19 -2.41 10.78 5.36 0.06 -2.35 16 27 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.18 1.26 8.06 -52.49 -0.42 0.84 16 31 H 0.10 1.00 6.97 -51.93 -0.36 0.64 16 32 H 0.07 0.43 7.54 -51.93 -0.39 0.03 16 33 H 0.35 2.21 8.51 -39.30 -0.33 1.88 16 34 H 0.07 0.83 7.40 -51.93 -0.38 0.45 16 35 H 0.07 0.84 7.36 -51.93 -0.38 0.46 16 36 H 0.41 4.99 8.09 -40.82 -0.33 4.66 16 37 H 0.09 1.71 8.14 -51.91 -0.42 1.28 16 38 H 0.09 1.75 8.14 -51.92 -0.42 1.33 16 39 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 40 H 0.09 0.48 7.95 -51.93 -0.41 0.07 16 41 H 0.08 0.62 8.10 -51.93 -0.42 0.20 16 42 H 0.09 0.58 7.67 -51.93 -0.40 0.18 16 43 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.07 0.48 8.10 -51.93 -0.42 0.06 16 45 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 391.95 15.07 5.91 5.91 Total: -1.00 -36.33 391.95 -8.80 -45.13 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -6.76 Total: 3.44 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: -0.56 Total: -5.00 kcal Atomic # 7 Polarization: -47.52 SS G_CDS: -0.29 Total: -47.81 kcal Atomic # 8 Polarization: -14.45 SS G_CDS: 0.15 Total: -14.30 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.33 -8.80 -45.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700126890.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.129 kcal (2) G-P(sol) polarization free energy of solvation -36.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds