Wall clock time and date at job start Tue Mar 31 2020 22:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30258 * 125.61652 * 2 1 4 4 C 1.34480 * 108.69871 * 180.25898 * 3 2 1 5 5 C 1.34330 * 107.66962 * 0.02562 * 4 3 2 6 6 C 1.50697 * 126.44375 * 179.97438 * 5 4 3 7 7 N 1.46898 * 109.47012 * 89.99350 * 6 5 4 8 8 C 1.46903 * 110.99765 * 175.26671 * 7 6 5 9 9 C 1.53003 * 112.85051 * 290.68302 * 8 7 6 10 10 N 1.46498 * 109.47113 * 312.17601 * 9 8 7 11 11 C 1.34773 * 119.99835 * 174.70460 * 10 9 8 12 12 O 1.21280 * 120.00103 * 359.97438 * 11 10 9 13 13 C 1.50696 * 120.00059 * 180.02562 * 11 10 9 14 14 S 1.80995 * 109.47484 * 180.02562 * 13 11 10 15 15 C 1.76201 * 100.00486 * 179.97438 * 14 13 11 16 16 H 1.08010 * 119.99486 * 0.02562 * 15 14 13 17 17 C 1.38797 * 120.00434 * 179.97438 * 15 14 13 18 18 N 1.31628 * 119.99772 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00110 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.47160 * 90.00094 * 19 17 15 21 21 H 1.48494 * 109.47248 * 209.99920 * 19 17 15 22 22 H 1.48500 * 109.47420 * 330.00238 * 19 17 15 23 23 C 1.53782 * 113.61200 * 159.37698 * 8 7 6 24 24 C 1.53787 * 87.08187 * 220.01963 * 23 8 7 25 25 C 1.53781 * 113.61469 * 61.88202 * 8 7 6 26 26 O 1.33969 * 125.62008 * 180.30741 * 2 1 3 27 27 H 1.09001 * 109.46991 * 269.69093 * 1 2 3 28 28 H 1.09002 * 109.46904 * 29.68978 * 1 2 3 29 29 H 1.08998 * 109.47265 * 149.69245 * 1 2 3 30 30 H 1.07997 * 126.16272 * 180.02562 * 4 3 2 31 31 H 1.08991 * 109.47243 * 209.99780 * 6 5 4 32 32 H 1.09001 * 109.46735 * 329.99676 * 6 5 4 33 33 H 1.00892 * 111.00340 * 299.22136 * 7 6 5 34 34 H 1.08999 * 109.47245 * 72.17962 * 9 8 7 35 35 H 1.08998 * 109.47099 * 192.17825 * 9 8 7 36 36 H 0.96998 * 120.00112 * 354.70688 * 10 9 8 37 37 H 1.09011 * 109.47283 * 299.99977 * 13 11 10 38 38 H 1.09002 * 109.47436 * 59.99606 * 13 11 10 39 39 H 0.96997 * 119.99998 * 179.97438 * 18 17 15 40 40 H 1.08999 * 113.61853 * 334.56609 * 23 8 7 41 41 H 1.09003 * 113.61563 * 105.47544 * 23 8 7 42 42 H 1.09000 * 113.61392 * 270.89086 * 24 23 8 43 43 H 1.08992 * 113.61550 * 139.97913 * 24 23 8 44 44 H 1.09005 * 113.61393 * 254.52856 * 25 8 7 45 45 H 1.09001 * 113.61521 * 25.42707 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5522 0.6676 -0.0058 5 6 3.5698 -0.6756 -0.0099 6 6 4.7937 -1.5548 -0.0175 7 7 5.1970 -1.8446 1.3650 8 6 6.3202 -2.7908 1.3984 9 6 5.9240 -4.1993 0.9509 10 7 4.6945 -4.6022 1.6381 11 6 4.0961 -5.7674 1.3208 12 8 4.5753 -6.4821 0.4661 13 6 2.8311 -6.1816 2.0271 14 16 2.2772 -7.7805 1.3848 15 6 0.8266 -8.0152 2.3572 16 1 0.5367 -7.2697 3.0831 17 6 0.0560 -9.1573 2.1897 18 7 0.4085 -10.0650 1.3040 19 14 -1.4814 -9.4063 3.2212 20 1 -2.6494 -8.8161 2.5192 21 1 -1.7097 -10.8592 3.4266 22 1 -1.3073 -8.7416 4.5376 23 6 7.1118 -2.7609 2.7164 24 6 8.3839 -2.9055 1.8644 25 6 7.5918 -2.2619 0.7141 26 8 2.2873 -1.0890 -0.0058 27 1 -0.3633 -0.0055 1.0277 28 1 -0.3633 0.8928 -0.5090 29 1 -0.3634 -0.8872 -0.5186 30 1 4.4156 1.3163 -0.0068 31 1 4.5675 -2.4880 -0.5332 32 1 5.6059 -1.0424 -0.5331 33 1 5.4244 -0.9958 1.8608 34 1 5.7568 -4.2048 -0.1262 35 1 6.7238 -4.8974 1.1980 36 1 4.3111 -4.0304 2.3213 37 1 3.0234 -6.2671 3.0967 38 1 2.0575 -5.4331 1.8559 39 1 -0.1298 -10.8634 1.1872 40 1 7.0456 -1.8095 3.2442 41 1 6.9186 -3.6182 3.3614 42 1 8.6666 -3.9408 1.6740 43 1 9.2163 -2.2960 2.2158 44 1 7.7859 -2.7162 -0.2575 45 1 7.6567 -1.1740 0.6943 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700126890.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:27 Heat of formation + Delta-G solvation = -21.737004 kcal Electronic energy + Delta-G solvation = -26777.613554 eV Core-core repulsion = 22922.514052 eV Total energy + Delta-G solvation = -3855.099502 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.31288 -41.31196 -40.02309 -35.76316 -35.75060 -35.29078 -34.58340 -32.73621 -31.32627 -29.53250 -27.94159 -27.43345 -26.81293 -25.66394 -23.52037 -23.04251 -21.97729 -21.66998 -20.17382 -19.52845 -18.16891 -17.90179 -17.74344 -17.42688 -16.96903 -16.87785 -16.42272 -16.19683 -15.70506 -15.57393 -15.48195 -15.00927 -14.64485 -14.56872 -14.44061 -14.28758 -13.89560 -13.70354 -13.52540 -13.35714 -13.16769 -13.16507 -13.10658 -12.88740 -12.61040 -12.51227 -12.30982 -12.06050 -11.74522 -11.56120 -11.53050 -11.25491 -11.14181 -10.95383 -10.28429 -10.06007 -9.73670 -9.44019 -8.66585 -8.34543 -6.12666 0.40853 1.27031 1.42502 1.46853 1.57732 1.63065 1.64211 1.73537 2.26223 2.30820 2.99437 3.05857 3.19461 3.33716 3.46907 3.58145 3.62202 3.84803 3.92118 4.01710 4.04510 4.11993 4.27802 4.36322 4.47454 4.49758 4.57454 4.60292 4.63563 4.64596 4.70972 4.80902 4.86908 5.02567 5.06020 5.09815 5.10909 5.14429 5.36884 5.37797 5.41621 5.48769 5.85175 6.19887 6.35943 6.56182 6.72915 7.06562 7.27170 8.74784 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008859 B = 0.003112 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3159.712162 B = 8994.869101 C =11558.381906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.181 3.819 3 N -0.513 5.513 4 C -0.038 4.038 5 C -0.048 4.048 6 C 0.150 3.850 7 N -0.675 5.675 8 C 0.088 3.912 9 C 0.149 3.851 10 N -0.698 5.698 11 C 0.532 3.468 12 O -0.569 6.569 13 C -0.127 4.127 14 S -0.147 6.147 15 C -0.548 4.548 16 H 0.081 0.919 17 C 0.014 3.986 18 N -0.911 5.911 19 Si 0.999 3.001 20 H -0.267 1.267 21 H -0.277 1.277 22 H -0.258 1.258 23 C -0.125 4.125 24 C -0.138 4.138 25 C -0.156 4.156 26 O -0.215 6.215 27 H 0.106 0.894 28 H 0.114 0.886 29 H 0.095 0.905 30 H 0.208 0.792 31 H 0.071 0.929 32 H 0.097 0.903 33 H 0.361 0.639 34 H 0.054 0.946 35 H 0.069 0.931 36 H 0.416 0.584 37 H 0.106 0.894 38 H 0.102 0.898 39 H 0.271 0.729 40 H 0.104 0.896 41 H 0.066 0.934 42 H 0.076 0.924 43 H 0.086 0.914 44 H 0.070 0.930 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.844 25.885 1.611 28.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.025 4.025 3 N -0.244 5.244 4 C -0.177 4.177 5 C -0.102 4.102 6 C 0.021 3.979 7 N -0.309 5.309 8 C -0.003 4.003 9 C 0.025 3.975 10 N -0.351 5.351 11 C 0.318 3.682 12 O -0.448 6.448 13 C -0.279 4.279 14 S 0.080 5.920 15 C -0.695 4.695 16 H 0.099 0.901 17 C -0.190 4.190 18 N -0.547 5.547 19 Si 0.820 3.180 20 H -0.192 1.192 21 H -0.202 1.202 22 H -0.182 1.182 23 C -0.163 4.163 24 C -0.175 4.175 25 C -0.196 4.196 26 O -0.102 6.102 27 H 0.124 0.876 28 H 0.132 0.868 29 H 0.114 0.886 30 H 0.225 0.775 31 H 0.089 0.911 32 H 0.115 0.885 33 H 0.182 0.818 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.253 0.747 37 H 0.124 0.876 38 H 0.120 0.880 39 H 0.080 0.920 40 H 0.123 0.877 41 H 0.085 0.915 42 H 0.095 0.905 43 H 0.105 0.895 44 H 0.089 0.911 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 11.880 24.648 0.217 27.363 hybrid contribution -0.638 0.300 1.166 1.362 sum 11.242 24.948 1.382 27.399 Atomic orbital electron populations 1.20492 0.79214 1.06120 1.05927 1.27111 0.97870 0.78272 0.99287 1.70464 1.02997 1.30842 1.20090 1.23487 0.95470 0.93044 1.05739 1.23628 0.83677 0.95388 1.07461 1.20176 0.88938 0.97298 0.91454 1.60014 1.39298 1.18002 1.13550 1.22444 0.87986 0.90706 0.99196 1.21106 0.86154 0.93918 0.96361 1.45527 1.26971 1.20393 1.42190 1.20018 0.84737 0.81340 0.82154 1.90678 1.66055 1.54032 1.34049 1.23334 0.98183 1.02342 1.04005 1.85510 1.31835 1.20367 1.54296 1.23202 1.11272 1.09661 1.25401 0.90119 1.26123 1.01810 0.94297 0.96820 1.70181 1.40125 1.09982 1.34453 0.84956 0.76871 0.77723 0.78445 1.19224 1.20181 1.18240 1.23146 0.94581 1.03592 0.94945 1.22753 0.97068 1.01469 0.96257 1.23609 0.95049 1.01979 0.98975 1.84467 1.17673 1.38543 1.69524 0.87566 0.86798 0.88581 0.77482 0.91077 0.88522 0.81754 0.92760 0.91300 0.74676 0.87553 0.88010 0.91965 0.87741 0.91547 0.90550 0.89539 0.91100 0.87571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.85 10.51 71.24 0.75 -0.10 16 2 C 0.18 4.04 8.34 88.34 0.74 4.77 16 3 N -0.51 -11.88 11.29 -303.82 -3.43 -15.32 16 4 C -0.04 -0.71 11.80 83.39 0.98 0.27 16 5 C -0.05 -0.97 6.94 24.79 0.17 -0.80 16 6 C 0.15 2.30 5.85 85.56 0.50 2.80 16 7 N -0.68 -8.98 5.76 -471.55 -2.72 -11.70 16 8 C 0.09 1.16 0.80 4.05 0.00 1.17 16 9 C 0.15 3.30 4.63 86.38 0.40 3.70 16 10 N -0.70 -18.90 5.38 -463.07 -2.49 -21.39 16 11 C 0.53 20.56 7.85 87.66 0.69 21.24 16 12 O -0.57 -27.03 15.86 -3.03 -0.05 -27.08 16 13 C -0.13 -5.33 6.16 71.23 0.44 -4.89 16 14 S -0.15 -8.37 20.57 -56.49 -1.16 -9.54 16 15 C -0.55 -31.89 9.50 67.95 0.65 -31.24 16 16 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 17 C 0.01 0.82 5.49 84.86 0.47 1.29 16 18 N -0.91 -56.50 13.22 21.65 0.29 -56.22 16 19 Si 1.00 44.03 29.55 68.60 2.03 46.06 16 20 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 21 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 22 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 23 C -0.12 -1.34 7.33 31.12 0.23 -1.11 16 24 C -0.14 -1.33 7.73 31.12 0.24 -1.09 16 25 C -0.16 -1.44 6.44 31.12 0.20 -1.23 16 26 O -0.21 -5.50 10.78 -3.75 -0.04 -5.54 16 27 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.21 2.32 8.06 -2.91 -0.02 2.29 16 31 H 0.07 1.47 6.97 -2.39 -0.02 1.45 16 32 H 0.10 0.93 7.54 -2.39 -0.02 0.91 16 33 H 0.36 3.41 8.51 -89.70 -0.76 2.65 16 34 H 0.05 1.37 7.40 -2.39 -0.02 1.36 16 35 H 0.07 1.60 7.36 -2.39 -0.02 1.59 16 36 H 0.42 9.64 8.09 -92.71 -0.75 8.89 16 37 H 0.11 4.04 8.14 -2.39 -0.02 4.02 16 38 H 0.10 3.98 8.14 -2.39 -0.02 3.96 16 39 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 40 H 0.10 0.78 7.95 -2.39 -0.02 0.76 16 41 H 0.07 0.91 8.10 -2.39 -0.02 0.89 16 42 H 0.08 0.91 7.67 -2.39 -0.02 0.89 16 43 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.07 0.75 8.10 -2.38 -0.02 0.73 16 45 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 Total: -1.00 -81.68 391.95 -1.61 -83.29 By element: Atomic # 1 Polarization: 23.14 SS G_CDS: -0.49 Total: 22.65 kcal Atomic # 6 Polarization: -11.67 SS G_CDS: 6.45 Total: -5.22 kcal Atomic # 7 Polarization: -96.28 SS G_CDS: -8.35 Total: -104.63 kcal Atomic # 8 Polarization: -32.53 SS G_CDS: -0.09 Total: -32.62 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Atomic # 16 Polarization: -8.37 SS G_CDS: -1.16 Total: -9.54 kcal Total: -81.68 -1.61 -83.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700126890.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.558 kcal (2) G-P(sol) polarization free energy of solvation -81.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds