Wall clock time and date at job start Tue Mar 31 2020 22:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30701 * 122.11056 * 2 1 4 4 C 1.30567 * 115.90640 * 180.21536 * 3 2 1 5 5 C 1.47249 * 125.54137 * 179.77958 * 4 3 2 6 6 O 1.21621 * 120.00268 * 179.69527 * 5 4 3 7 7 N 1.34777 * 120.00215 * 359.69256 * 5 4 3 8 8 C 1.46498 * 120.00124 * 185.05354 * 7 5 4 9 9 C 1.52997 * 109.54849 * 298.45253 * 8 7 5 10 10 N 1.46500 * 109.47057 * 305.24367 * 9 8 7 11 11 C 1.36933 * 119.99997 * 175.37299 * 10 9 8 12 12 H 1.07993 * 120.00182 * 4.09828 * 11 10 9 13 13 C 1.38808 * 119.99959 * 184.37144 * 11 10 9 14 14 N 1.31620 * 120.00130 * 172.54903 * 13 11 10 15 15 Si 1.86806 * 120.00096 * 352.54991 * 13 11 10 16 16 H 1.48506 * 109.46907 * 92.30974 * 15 13 11 17 17 H 1.48504 * 109.47142 * 212.30941 * 15 13 11 18 18 H 1.48496 * 109.46943 * 332.31399 * 15 13 11 19 19 C 1.53184 * 109.61305 * 58.67759 * 8 7 5 20 20 C 1.53089 * 109.16350 * 62.92803 * 19 8 7 21 21 O 1.42906 * 109.41603 * 57.61054 * 20 19 8 22 22 C 1.42902 * 114.09573 * 298.83945 * 21 20 19 23 23 C 1.53094 * 109.41496 * 61.15720 * 22 21 20 24 24 S 1.76096 * 108.91247 * 359.51642 * 4 3 2 25 25 C 1.34243 * 122.10546 * 179.67756 * 2 1 3 26 26 C 1.50700 * 125.45302 * 0.02863 * 25 2 1 27 27 H 1.08993 * 109.47501 * 270.32209 * 1 2 3 28 28 H 1.09003 * 109.47150 * 30.31968 * 1 2 3 29 29 H 1.09006 * 109.47406 * 150.31772 * 1 2 3 30 30 H 0.96997 * 119.99785 * 5.06292 * 7 5 4 31 31 H 1.08994 * 109.47388 * 185.24117 * 9 8 7 32 32 H 1.09004 * 109.46702 * 65.24091 * 9 8 7 33 33 H 0.96997 * 119.99691 * 355.37032 * 10 9 8 34 34 H 0.97005 * 119.99949 * 180.02562 * 14 13 11 35 35 H 1.09001 * 109.51898 * 182.83709 * 19 8 7 36 36 H 1.08994 * 109.51958 * 303.01773 * 19 8 7 37 37 H 1.08998 * 109.48446 * 297.62368 * 20 19 8 38 38 H 1.08996 * 109.48755 * 177.59541 * 20 19 8 39 39 H 1.09002 * 109.48498 * 301.17627 * 22 21 20 40 40 H 1.08997 * 109.49214 * 181.14651 * 22 21 20 41 41 H 1.09004 * 109.52011 * 182.48173 * 23 22 21 42 42 H 1.09003 * 109.57002 * 62.32861 * 23 22 21 43 43 H 1.09004 * 109.46959 * 179.97438 * 26 25 2 44 44 H 1.09002 * 109.46930 * 299.97096 * 26 25 2 45 45 H 1.08992 * 109.47486 * 59.97092 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2017 1.1071 0.0000 4 6 3.4997 0.9660 -0.0044 5 6 4.4801 2.0646 -0.0100 6 8 5.6709 1.8171 -0.0082 7 7 4.0580 3.3445 -0.0170 8 6 5.0288 4.4354 -0.1343 9 6 5.9848 4.4005 1.0597 10 7 5.2128 4.4320 2.3044 11 6 5.8520 4.3135 3.5096 12 1 6.9301 4.2634 3.5465 13 6 5.1139 4.2520 4.6836 14 7 5.7142 3.9916 5.8256 15 14 3.2684 4.5389 4.6427 16 1 2.5687 3.2385 4.4851 17 1 2.8392 5.1815 5.9108 18 1 2.9304 5.4246 3.4997 19 6 5.8252 4.2776 -1.4333 20 6 4.8710 4.3926 -2.6249 21 8 4.1946 5.6503 -2.5721 22 6 3.3959 5.8346 -1.4015 23 6 4.2908 5.7774 -0.1607 24 16 3.8872 -0.7518 0.0050 25 6 2.2204 -1.1371 0.0064 26 6 1.6452 -2.5300 0.0136 27 1 -0.3634 0.0058 1.0276 28 1 -0.3633 0.8871 -0.5188 29 1 -0.3634 -0.8928 -0.5089 30 1 3.1114 3.5434 0.0556 31 1 6.6467 5.2655 1.0207 32 1 6.5783 3.4869 1.0232 33 1 4.2490 4.5368 2.2748 34 1 5.1983 3.9483 6.6459 35 1 6.5808 5.0608 -1.4946 36 1 6.3094 3.3012 -1.4472 37 1 4.1402 3.5849 -2.5848 38 1 5.4384 4.3237 -3.5530 39 1 2.6458 5.0457 -1.3453 40 1 2.9006 6.8044 -1.4481 41 1 3.6776 5.8737 0.7354 42 1 5.0154 6.5910 -0.1953 43 1 2.4563 -3.2581 0.0174 44 1 1.0316 -2.6650 0.9044 45 1 1.0315 -2.6743 -0.8755 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700251741.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:21 Heat of formation + Delta-G solvation = -22.413006 kcal Electronic energy + Delta-G solvation = -28619.605157 eV Core-core repulsion = 24764.476342 eV Total energy + Delta-G solvation = -3855.128815 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.77891 -39.95745 -38.32994 -35.92662 -33.86962 -33.48284 -31.71603 -31.17827 -30.75811 -29.99662 -27.11531 -26.34999 -24.93969 -23.76979 -23.32510 -21.52509 -21.23866 -19.68885 -18.93033 -18.18434 -17.71104 -17.28478 -16.07381 -15.99552 -15.65510 -15.43641 -14.87464 -14.78199 -14.49680 -14.27830 -13.84065 -13.65835 -13.36090 -13.31355 -13.16885 -13.15089 -12.80182 -12.65294 -12.49943 -12.42401 -12.35712 -11.96352 -11.77574 -11.28141 -11.24672 -11.15592 -10.91308 -10.68903 -10.40447 -10.23478 -10.13611 -9.76668 -9.57848 -9.53685 -9.51183 -8.85619 -8.79320 -8.64378 -7.16255 -5.73681 -3.06769 0.17661 1.05593 1.59422 2.25727 3.19469 3.33046 3.35987 3.38225 3.44291 3.87234 4.00026 4.59418 4.60969 4.63200 4.72883 4.85482 4.89676 4.97227 5.03044 5.13227 5.21034 5.23460 5.36023 5.41374 5.45131 5.55982 5.56333 5.61796 5.65417 5.66558 5.72586 5.89872 5.93023 6.03701 6.07408 6.17975 6.24797 6.39603 6.73162 6.90899 7.17619 7.36885 7.64425 8.04652 8.26744 8.45446 9.24851 9.97259 10.17707 11.44963 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008113 B = 0.005430 C = 0.003994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3450.624861 B = 5155.638120 C = 7009.226803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.049 3.951 3 N -0.423 5.423 4 C -0.012 4.012 5 C 0.606 3.394 6 O -0.513 6.513 7 N -0.692 5.692 8 C 0.169 3.831 9 C 0.147 3.853 10 N -0.749 5.749 11 C -0.235 4.235 12 H 0.090 0.910 13 C 0.004 3.996 14 N -0.933 5.933 15 Si 0.878 3.122 16 H -0.287 1.287 17 H -0.291 1.291 18 H -0.278 1.278 19 C -0.164 4.164 20 C 0.065 3.935 21 O -0.383 6.383 22 C 0.060 3.940 23 C -0.156 4.156 24 S 0.247 5.753 25 C -0.254 4.254 26 C -0.073 4.073 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.405 0.595 31 H 0.031 0.969 32 H 0.059 0.941 33 H 0.357 0.643 34 H 0.258 0.742 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.047 0.953 38 H 0.092 0.908 39 H 0.048 0.952 40 H 0.095 0.905 41 H 0.084 0.916 42 H 0.093 0.907 43 H 0.070 0.930 44 H 0.081 0.919 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.168 -8.318 -18.570 22.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.089 4.089 3 N -0.141 5.141 4 C -0.287 4.287 5 C 0.388 3.612 6 O -0.388 6.388 7 N -0.344 5.344 8 C 0.084 3.916 9 C 0.020 3.980 10 N -0.394 5.394 11 C -0.365 4.365 12 H 0.108 0.892 13 C -0.191 4.191 14 N -0.581 5.581 15 Si 0.709 3.291 16 H -0.214 1.214 17 H -0.217 1.217 18 H -0.204 1.204 19 C -0.202 4.202 20 C -0.012 4.012 21 O -0.302 6.302 22 C -0.017 4.017 23 C -0.194 4.194 24 S 0.504 5.496 25 C -0.377 4.377 26 C -0.131 4.131 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.240 0.760 31 H 0.049 0.951 32 H 0.077 0.923 33 H 0.189 0.811 34 H 0.068 0.932 35 H 0.103 0.897 36 H 0.114 0.886 37 H 0.065 0.935 38 H 0.110 0.890 39 H 0.066 0.934 40 H 0.114 0.886 41 H 0.103 0.897 42 H 0.112 0.888 43 H 0.089 0.911 44 H 0.099 0.901 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.303 -8.400 -18.550 21.990 hybrid contribution -2.836 0.112 0.692 2.921 sum -11.139 -8.287 -17.858 22.620 Atomic orbital electron populations 1.20365 0.87146 1.03167 1.03013 1.20071 0.98617 0.86048 1.04164 1.66634 1.03726 1.31194 1.12550 1.27598 0.93521 0.97421 1.10140 1.16541 0.86222 0.81560 0.76890 1.90815 1.15012 1.83564 1.49370 1.45708 1.11006 1.04445 1.73227 1.20773 0.89496 0.85067 0.96313 1.21089 0.92819 1.00444 0.83686 1.42533 1.04974 1.90016 1.01886 1.19039 0.93296 1.41731 0.82477 0.89227 1.24619 0.96892 1.02075 0.95519 1.69725 1.34766 1.55524 0.98087 0.86618 0.87748 0.77958 0.76791 1.21374 1.21699 1.20449 1.22548 0.99014 1.05105 0.93576 1.22530 0.94516 0.85732 0.98421 1.87902 1.63950 1.36880 1.41447 1.22608 0.92510 1.01780 0.84797 1.22471 1.00844 0.96932 0.99185 1.83982 1.02046 1.00921 1.62625 1.25558 0.98940 1.01815 1.11349 1.20235 1.00950 0.88675 1.03290 0.90631 0.90620 0.90830 0.75967 0.95119 0.92329 0.81068 0.93203 0.89709 0.88608 0.93511 0.89005 0.93357 0.88648 0.89710 0.88828 0.91064 0.90068 0.90150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.71 10.02 36.00 0.36 -0.35 16 2 C 0.05 0.61 6.68 -84.48 -0.56 0.05 16 3 N -0.42 -6.33 10.22 -7.69 -0.08 -6.41 16 4 C -0.01 -0.19 7.46 -14.43 -0.11 -0.29 16 5 C 0.61 10.60 7.21 -12.60 -0.09 10.51 16 6 O -0.51 -10.03 13.25 5.26 0.07 -9.96 16 7 N -0.69 -11.11 3.71 -48.55 -0.18 -11.29 16 8 C 0.17 2.69 0.32 -131.64 -0.04 2.65 16 9 C 0.15 3.00 4.89 -4.04 -0.02 2.98 16 10 N -0.75 -18.15 5.02 -59.91 -0.30 -18.45 16 11 C -0.24 -6.87 10.46 -15.06 -0.16 -7.02 16 12 H 0.09 2.82 8.06 -52.49 -0.42 2.39 16 13 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 14 N -0.93 -30.01 13.97 55.49 0.78 -29.23 16 15 Si 0.88 22.66 27.68 -169.99 -4.70 17.96 16 16 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 17 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 18 H -0.28 -6.65 6.63 56.52 0.37 -6.27 16 19 C -0.16 -2.27 4.75 -26.59 -0.13 -2.40 16 20 C 0.06 0.80 6.68 37.20 0.25 1.05 16 21 O -0.38 -5.05 10.77 -35.23 -0.38 -5.43 16 22 C 0.06 0.72 6.67 37.21 0.25 0.97 16 23 C -0.16 -2.19 4.79 -26.59 -0.13 -2.32 16 24 S 0.25 3.23 22.99 -107.50 -2.47 0.76 16 25 C -0.25 -2.85 6.36 -35.72 -0.23 -3.07 16 26 C -0.07 -0.53 9.45 36.01 0.34 -0.19 16 27 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.49 7.33 -51.93 -0.38 0.10 16 30 H 0.40 6.06 7.25 -40.82 -0.30 5.76 16 31 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 1.33 6.28 -51.93 -0.33 1.00 16 33 H 0.36 8.40 4.46 -40.82 -0.18 8.21 16 34 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 35 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.10 1.45 6.19 -51.93 -0.32 1.12 16 37 H 0.05 0.59 7.75 -51.93 -0.40 0.19 16 38 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.05 0.55 7.13 -51.93 -0.37 0.18 16 40 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.08 1.28 7.21 -51.93 -0.37 0.91 16 42 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.08 0.45 7.93 -51.93 -0.41 0.04 16 LS Contribution 370.86 15.07 5.59 5.59 Total: -1.00 -34.89 370.86 -8.50 -43.38 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -6.45 Total: 10.48 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: -0.36 Total: 2.60 kcal Atomic # 7 Polarization: -65.59 SS G_CDS: 0.22 Total: -65.38 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: -0.31 Total: -15.39 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -4.70 Total: 17.96 kcal Atomic # 16 Polarization: 3.23 SS G_CDS: -2.47 Total: 0.76 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.89 -8.50 -43.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700251741.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.971 kcal (2) G-P(sol) polarization free energy of solvation -34.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds