Wall clock time and date at job start Tue Mar 31 2020 22:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30701 * 122.11056 * 2 1 4 4 C 1.30567 * 115.90640 * 180.21536 * 3 2 1 5 5 C 1.47249 * 125.54137 * 179.77958 * 4 3 2 6 6 O 1.21621 * 120.00268 * 179.69527 * 5 4 3 7 7 N 1.34777 * 120.00215 * 359.69256 * 5 4 3 8 8 C 1.46498 * 120.00124 * 185.05354 * 7 5 4 9 9 C 1.52997 * 109.54849 * 298.45253 * 8 7 5 10 10 N 1.46500 * 109.47057 * 305.24367 * 9 8 7 11 11 C 1.36933 * 119.99997 * 175.37299 * 10 9 8 12 12 H 1.07993 * 120.00182 * 4.09828 * 11 10 9 13 13 C 1.38808 * 119.99959 * 184.37144 * 11 10 9 14 14 N 1.31620 * 120.00130 * 172.54903 * 13 11 10 15 15 Si 1.86806 * 120.00096 * 352.54991 * 13 11 10 16 16 H 1.48506 * 109.46907 * 92.30974 * 15 13 11 17 17 H 1.48504 * 109.47142 * 212.30941 * 15 13 11 18 18 H 1.48496 * 109.46943 * 332.31399 * 15 13 11 19 19 C 1.53184 * 109.61305 * 58.67759 * 8 7 5 20 20 C 1.53089 * 109.16350 * 62.92803 * 19 8 7 21 21 O 1.42906 * 109.41603 * 57.61054 * 20 19 8 22 22 C 1.42902 * 114.09573 * 298.83945 * 21 20 19 23 23 C 1.53094 * 109.41496 * 61.15720 * 22 21 20 24 24 S 1.76096 * 108.91247 * 359.51642 * 4 3 2 25 25 C 1.34243 * 122.10546 * 179.67756 * 2 1 3 26 26 C 1.50700 * 125.45302 * 0.02863 * 25 2 1 27 27 H 1.08993 * 109.47501 * 270.32209 * 1 2 3 28 28 H 1.09003 * 109.47150 * 30.31968 * 1 2 3 29 29 H 1.09006 * 109.47406 * 150.31772 * 1 2 3 30 30 H 0.96997 * 119.99785 * 5.06292 * 7 5 4 31 31 H 1.08994 * 109.47388 * 185.24117 * 9 8 7 32 32 H 1.09004 * 109.46702 * 65.24091 * 9 8 7 33 33 H 0.96997 * 119.99691 * 355.37032 * 10 9 8 34 34 H 0.97005 * 119.99949 * 180.02562 * 14 13 11 35 35 H 1.09001 * 109.51898 * 182.83709 * 19 8 7 36 36 H 1.08994 * 109.51958 * 303.01773 * 19 8 7 37 37 H 1.08998 * 109.48446 * 297.62368 * 20 19 8 38 38 H 1.08996 * 109.48755 * 177.59541 * 20 19 8 39 39 H 1.09002 * 109.48498 * 301.17627 * 22 21 20 40 40 H 1.08997 * 109.49214 * 181.14651 * 22 21 20 41 41 H 1.09004 * 109.52011 * 182.48173 * 23 22 21 42 42 H 1.09003 * 109.57002 * 62.32861 * 23 22 21 43 43 H 1.09004 * 109.46959 * 179.97438 * 26 25 2 44 44 H 1.09002 * 109.46930 * 299.97096 * 26 25 2 45 45 H 1.08992 * 109.47486 * 59.97092 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2017 1.1071 0.0000 4 6 3.4997 0.9660 -0.0044 5 6 4.4801 2.0646 -0.0100 6 8 5.6709 1.8171 -0.0082 7 7 4.0580 3.3445 -0.0170 8 6 5.0288 4.4354 -0.1343 9 6 5.9848 4.4005 1.0597 10 7 5.2128 4.4320 2.3044 11 6 5.8520 4.3135 3.5096 12 1 6.9301 4.2634 3.5465 13 6 5.1139 4.2520 4.6836 14 7 5.7142 3.9916 5.8256 15 14 3.2684 4.5389 4.6427 16 1 2.5687 3.2385 4.4851 17 1 2.8392 5.1815 5.9108 18 1 2.9304 5.4246 3.4997 19 6 5.8252 4.2776 -1.4333 20 6 4.8710 4.3926 -2.6249 21 8 4.1946 5.6503 -2.5721 22 6 3.3959 5.8346 -1.4015 23 6 4.2908 5.7774 -0.1607 24 16 3.8872 -0.7518 0.0050 25 6 2.2204 -1.1371 0.0064 26 6 1.6452 -2.5300 0.0136 27 1 -0.3634 0.0058 1.0276 28 1 -0.3633 0.8871 -0.5188 29 1 -0.3634 -0.8928 -0.5089 30 1 3.1114 3.5434 0.0556 31 1 6.6467 5.2655 1.0207 32 1 6.5783 3.4869 1.0232 33 1 4.2490 4.5368 2.2748 34 1 5.1983 3.9483 6.6459 35 1 6.5808 5.0608 -1.4946 36 1 6.3094 3.3012 -1.4472 37 1 4.1402 3.5849 -2.5848 38 1 5.4384 4.3237 -3.5530 39 1 2.6458 5.0457 -1.3453 40 1 2.9006 6.8044 -1.4481 41 1 3.6776 5.8737 0.7354 42 1 5.0154 6.5910 -0.1953 43 1 2.4563 -3.2581 0.0174 44 1 1.0316 -2.6650 0.9044 45 1 1.0315 -2.6743 -0.8755 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700251741.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:20 Heat of formation + Delta-G solvation = -48.284164 kcal Electronic energy + Delta-G solvation = -28620.727015 eV Core-core repulsion = 24764.476342 eV Total energy + Delta-G solvation = -3856.250673 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.00049 -40.96717 -39.50589 -37.41319 -35.61120 -34.51386 -33.37107 -32.51651 -32.15643 -30.74017 -28.61353 -27.48375 -25.83461 -25.20056 -24.69105 -23.10366 -22.49950 -20.82226 -20.19428 -19.81807 -19.14105 -18.36211 -17.23664 -17.05099 -16.85126 -16.71976 -16.49163 -16.01899 -15.90824 -15.44715 -15.32939 -14.89283 -14.82823 -14.47721 -14.18755 -14.04330 -13.91089 -13.80903 -13.76681 -13.47910 -13.34615 -13.17697 -12.99343 -12.93724 -12.90327 -12.35902 -12.20923 -12.11261 -11.93847 -11.85049 -11.55770 -11.27357 -11.06087 -10.85384 -10.65331 -10.51203 -10.11905 -9.65394 -9.31392 -8.07565 -5.39204 -0.87121 0.03526 0.62172 1.20734 1.27588 1.31960 1.39443 1.98229 2.11704 2.41839 2.89357 2.95238 3.22317 3.39186 3.62269 3.75688 3.81443 3.86656 3.91294 3.99310 4.03731 4.22247 4.37171 4.53981 4.61530 4.65982 4.66584 4.73840 4.76204 4.78883 4.79298 4.80650 4.85621 4.98711 5.03392 5.05529 5.07092 5.11396 5.33031 5.44558 5.71698 6.15376 6.18829 6.24625 6.48918 6.99556 7.02557 7.77358 7.99292 9.14312 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008113 B = 0.005430 C = 0.003994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3450.624861 B = 5155.638120 C = 7009.226803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.023 3.977 3 N -0.427 5.427 4 C -0.059 4.059 5 C 0.601 3.399 6 O -0.547 6.547 7 N -0.687 5.687 8 C 0.174 3.826 9 C 0.147 3.853 10 N -0.744 5.744 11 C -0.231 4.231 12 H 0.051 0.949 13 C -0.061 4.061 14 N -0.981 5.981 15 Si 0.949 3.051 16 H -0.287 1.287 17 H -0.290 1.290 18 H -0.246 1.246 19 C -0.158 4.158 20 C 0.072 3.928 21 O -0.388 6.388 22 C 0.064 3.936 23 C -0.152 4.152 24 S 0.244 5.756 25 C -0.228 4.228 26 C -0.076 4.076 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.102 0.898 30 H 0.411 0.589 31 H 0.033 0.967 32 H 0.031 0.969 33 H 0.363 0.637 34 H 0.258 0.742 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.044 0.956 38 H 0.113 0.887 39 H 0.056 0.944 40 H 0.120 0.880 41 H 0.076 0.924 42 H 0.096 0.904 43 H 0.081 0.919 44 H 0.097 0.903 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.578 -8.779 -20.579 26.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.115 4.115 3 N -0.146 5.146 4 C -0.331 4.331 5 C 0.385 3.615 6 O -0.424 6.424 7 N -0.339 5.339 8 C 0.088 3.912 9 C 0.020 3.980 10 N -0.390 5.390 11 C -0.362 4.362 12 H 0.069 0.931 13 C -0.252 4.252 14 N -0.632 5.632 15 Si 0.775 3.225 16 H -0.214 1.214 17 H -0.216 1.216 18 H -0.170 1.170 19 C -0.196 4.196 20 C -0.005 4.005 21 O -0.307 6.307 22 C -0.013 4.013 23 C -0.190 4.190 24 S 0.501 5.499 25 C -0.351 4.351 26 C -0.135 4.135 27 H 0.097 0.903 28 H 0.094 0.906 29 H 0.121 0.879 30 H 0.247 0.753 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.197 0.803 34 H 0.067 0.933 35 H 0.110 0.890 36 H 0.098 0.902 37 H 0.063 0.937 38 H 0.131 0.869 39 H 0.074 0.926 40 H 0.138 0.862 41 H 0.095 0.905 42 H 0.115 0.885 43 H 0.100 0.900 44 H 0.115 0.885 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -11.729 -8.825 -20.615 25.306 hybrid contribution -1.702 0.106 1.318 2.155 sum -13.431 -8.719 -19.297 25.076 Atomic orbital electron populations 1.20479 0.84558 1.04672 1.03622 1.20678 1.00276 0.85744 1.04767 1.66625 1.03415 1.32711 1.11850 1.27291 0.93795 0.98039 1.14023 1.16852 0.86239 0.82296 0.76139 1.90788 1.16445 1.84159 1.51031 1.45683 1.11228 1.04167 1.72818 1.20689 0.89176 0.86385 0.94945 1.21148 0.93649 0.98990 0.84211 1.42412 1.05332 1.89719 1.01546 1.18976 0.91909 1.40660 0.84618 0.93138 1.25445 1.02423 1.02421 0.94933 1.69910 1.37016 1.57322 0.98936 0.85492 0.80869 0.78228 0.77864 1.21375 1.21641 1.16970 1.22489 0.99324 1.04488 0.93335 1.22526 0.94152 0.85544 0.98288 1.87907 1.64054 1.37000 1.41733 1.22690 0.91916 1.03443 0.83227 1.22457 1.00987 0.95421 1.00157 1.83958 1.04068 0.99579 1.62341 1.26142 0.97471 1.03550 1.07957 1.20501 1.01752 0.86085 1.05171 0.90340 0.90646 0.87910 0.75257 0.94884 0.95118 0.80306 0.93349 0.89018 0.90159 0.93735 0.86918 0.92621 0.86234 0.90504 0.88512 0.90045 0.88490 0.87502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.11 10.02 71.23 0.71 -0.40 16 2 C 0.02 0.52 6.68 41.81 0.28 0.80 16 3 N -0.43 -12.36 10.22 -178.24 -1.82 -14.18 16 4 C -0.06 -1.87 7.46 87.25 0.65 -1.22 16 5 C 0.60 21.54 7.21 86.61 0.62 22.16 16 6 O -0.55 -22.46 13.25 -4.10 -0.05 -22.51 16 7 N -0.69 -21.96 3.71 -425.78 -1.58 -23.53 16 8 C 0.17 5.48 0.32 3.72 0.00 5.49 16 9 C 0.15 6.17 4.89 86.38 0.42 6.59 16 10 N -0.74 -36.58 5.02 -343.47 -1.72 -38.30 16 11 C -0.23 -13.90 10.46 84.03 0.88 -13.02 16 12 H 0.05 3.37 8.06 -2.91 -0.02 3.35 16 13 C -0.06 -3.72 5.50 84.86 0.47 -3.26 16 14 N -0.98 -65.06 13.97 21.65 0.30 -64.76 16 15 Si 0.95 46.88 27.68 68.60 1.90 48.78 16 16 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 17 H -0.29 -14.28 7.11 99.48 0.71 -13.58 16 18 H -0.25 -10.70 6.63 99.48 0.66 -10.04 16 19 C -0.16 -4.33 4.75 30.69 0.15 -4.18 16 20 C 0.07 1.64 6.68 72.01 0.48 2.12 16 21 O -0.39 -9.21 10.77 -148.98 -1.60 -10.82 16 22 C 0.06 1.36 6.67 72.01 0.48 1.84 16 23 C -0.15 -4.01 4.79 30.68 0.15 -3.87 16 24 S 0.24 6.30 22.99 -56.49 -1.30 5.00 16 25 C -0.23 -4.58 6.36 24.77 0.16 -4.43 16 26 C -0.08 -0.81 9.45 71.24 0.67 -0.14 16 27 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.10 0.90 7.33 -2.38 -0.02 0.88 16 30 H 0.41 11.93 7.25 -92.71 -0.67 11.25 16 31 H 0.03 1.37 8.14 -2.39 -0.02 1.36 16 32 H 0.03 1.48 6.28 -2.38 -0.01 1.46 16 33 H 0.36 16.82 4.46 -92.71 -0.41 16.40 16 34 H 0.26 16.20 8.31 -92.70 -0.77 15.43 16 35 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 36 H 0.08 2.49 6.19 -2.39 -0.01 2.48 16 37 H 0.04 1.06 7.75 -2.39 -0.02 1.04 16 38 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.06 1.12 7.13 -2.39 -0.02 1.10 16 40 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.08 2.16 7.21 -2.38 -0.02 2.15 16 42 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 43 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 44 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.11 0.67 7.93 -2.39 -0.02 0.65 16 Total: -1.00 -78.77 370.86 0.14 -78.63 By element: Atomic # 1 Polarization: 33.29 SS G_CDS: -0.10 Total: 33.18 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: 6.12 Total: 8.51 kcal Atomic # 7 Polarization: -135.95 SS G_CDS: -4.82 Total: -140.77 kcal Atomic # 8 Polarization: -31.67 SS G_CDS: -1.66 Total: -33.33 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 1.90 Total: 48.78 kcal Atomic # 16 Polarization: 6.30 SS G_CDS: -1.30 Total: 5.00 kcal Total: -78.77 0.14 -78.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700251741.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.345 kcal (2) G-P(sol) polarization free energy of solvation -78.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds