Wall clock time and date at job start Tue Mar 31 2020 22:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30256 * 125.62092 * 2 1 4 4 C 1.34477 * 108.70623 * 180.14737 * 3 2 1 5 5 C 1.50701 * 126.16924 * 179.82863 * 4 3 2 6 6 N 1.46907 * 109.46668 * 274.69317 * 5 4 3 7 7 C 1.46907 * 110.99427 * 180.02562 * 6 5 4 8 8 H 1.09003 * 110.63925 * 323.30677 * 7 6 5 9 9 C 1.55157 * 110.71653 * 199.97435 * 7 6 5 10 10 C 1.55121 * 101.48653 * 205.96924 * 9 7 6 11 11 H 1.08999 * 110.50219 * 278.45440 * 10 9 7 12 12 C 1.52997 * 110.34363 * 156.05958 * 10 9 7 13 13 N 1.47426 * 104.71990 * 37.29538 * 10 9 7 14 14 C 1.34780 * 125.64500 * 155.82117 * 13 10 9 15 15 O 1.21280 * 120.00423 * 359.71076 * 14 13 10 16 16 C 1.50701 * 119.99795 * 179.71753 * 14 13 10 17 17 S 1.81002 * 109.47156 * 179.97438 * 16 14 13 18 18 C 1.76193 * 100.00049 * 180.02562 * 17 16 14 19 19 H 1.08005 * 120.00026 * 359.97438 * 18 17 16 20 20 C 1.38806 * 120.00056 * 180.02562 * 18 17 16 21 21 N 1.31631 * 120.00121 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 119.99856 * 0.02562 * 20 18 17 23 23 H 1.48489 * 109.47437 * 89.99924 * 22 20 18 24 24 H 1.48500 * 109.46931 * 210.00082 * 22 20 18 25 25 H 1.48503 * 109.46655 * 329.99597 * 22 20 18 26 26 C 1.47021 * 108.70691 * 335.55266 * 13 10 9 27 27 C 1.34332 * 107.66445 * 359.56647 * 4 3 2 28 28 O 1.33966 * 125.62034 * 179.66361 * 2 1 3 29 29 H 1.09000 * 109.46905 * 180.31332 * 1 2 3 30 30 H 1.09002 * 109.47296 * 300.31102 * 1 2 3 31 31 H 1.08996 * 109.47498 * 60.31086 * 1 2 3 32 32 H 1.08997 * 109.47059 * 154.69477 * 5 4 3 33 33 H 1.08997 * 109.47099 * 34.68601 * 5 4 3 34 34 H 1.00899 * 111.00191 * 56.05005 * 6 5 4 35 35 H 1.09007 * 111.00277 * 324.21000 * 9 7 6 36 36 H 1.09003 * 111.00336 * 88.02064 * 9 7 6 37 37 H 1.09004 * 109.47403 * 303.28246 * 12 10 9 38 38 H 1.09000 * 109.47355 * 63.28470 * 12 10 9 39 39 H 1.09005 * 109.47336 * 183.28674 * 12 10 9 40 40 H 1.09002 * 109.47060 * 299.99722 * 16 14 13 41 41 H 1.09001 * 109.47380 * 59.99809 * 16 14 13 42 42 H 0.96999 * 120.00138 * 179.97438 * 21 20 18 43 43 H 1.08997 * 109.87932 * 120.69869 * 26 13 10 44 44 H 1.08992 * 109.88291 * 241.71841 * 26 13 10 45 45 H 1.07999 * 126.44296 * 180.27694 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6676 -0.0033 5 6 4.7570 1.5728 -0.0081 6 7 5.0763 1.9555 -1.3900 7 6 6.2487 2.8396 -1.4338 8 1 6.2510 3.5174 -0.5800 9 6 6.2901 3.6308 -2.7678 10 6 7.8081 3.9163 -2.9107 11 1 8.0928 4.7786 -2.3079 12 6 8.1696 4.1491 -4.3791 13 7 8.4675 2.6978 -2.4069 14 6 9.7062 2.2815 -2.7367 15 8 10.3757 2.9269 -3.5152 16 6 10.2593 1.0138 -2.1383 17 16 11.9298 0.7259 -2.7726 18 6 12.3212 -0.7738 -1.9346 19 1 11.6013 -1.2225 -1.2661 20 6 13.5550 -1.3779 -2.1327 21 7 13.8476 -2.4980 -1.5062 22 14 14.8009 -0.6007 -3.2873 23 1 15.6620 0.3396 -2.5261 24 1 15.6432 -1.6626 -3.8940 25 1 14.0878 0.1387 -4.3597 26 6 7.5526 2.0154 -1.4801 27 6 3.5698 -0.6756 0.0044 28 8 2.2872 -1.0890 0.0064 29 1 -0.3633 -1.0277 0.0056 30 1 -0.3634 0.5187 0.8872 31 1 -0.3634 0.5090 -0.8927 32 1 5.6068 1.0488 0.4294 33 1 4.5417 2.4674 0.5761 34 1 4.2816 2.3858 -1.8388 35 1 5.9240 3.0220 -3.5946 36 1 5.7247 4.5595 -2.6890 37 1 7.8652 3.2849 -4.9696 38 1 7.6545 5.0378 -4.7436 39 1 9.2466 4.2902 -4.4702 40 1 10.2938 1.1093 -1.0530 41 1 9.6186 0.1745 -2.4089 42 1 14.7097 -2.9204 -1.6450 43 1 7.3421 1.0087 -1.8412 44 1 7.9989 1.9673 -0.4870 45 1 4.4469 -1.3057 0.0084 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700829426.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:04 Heat of formation + Delta-G solvation = -6.204247 kcal Electronic energy + Delta-G solvation = -26327.828787 eV Core-core repulsion = 22473.402836 eV Total energy + Delta-G solvation = -3854.425951 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.65235 -40.17182 -37.87993 -36.06964 -34.60581 -32.65169 -32.42663 -32.23255 -30.16331 -28.81535 -28.02487 -25.88078 -25.60561 -25.51699 -22.25449 -21.88915 -21.41087 -20.99629 -18.98880 -17.60039 -17.44106 -17.11689 -17.01263 -16.49809 -15.61246 -15.19663 -15.12640 -15.02709 -14.89975 -14.49052 -14.19140 -13.98056 -13.57655 -13.55530 -13.26659 -13.14724 -12.88075 -12.81018 -12.63499 -12.58741 -12.20938 -11.99382 -11.88795 -11.60424 -11.34955 -11.24308 -11.14160 -10.99640 -10.98308 -10.84575 -10.57574 -9.83881 -9.27194 -9.12779 -8.99030 -8.85606 -8.52214 -8.47760 -6.89974 -6.27728 -3.99002 1.13270 2.22454 2.43791 2.71196 2.98986 3.19891 3.34238 3.51731 3.54071 3.61486 3.90254 4.16938 4.33006 4.35401 4.41918 4.57449 4.74633 4.78659 4.84380 4.91188 4.97787 5.07019 5.11365 5.14544 5.16308 5.20532 5.30728 5.42188 5.47492 5.50746 5.54349 5.59886 5.62651 5.71609 5.74342 5.83060 5.93496 6.05060 6.11473 6.28578 6.58339 6.62341 6.91990 7.39504 7.64776 7.95408 8.42855 8.50193 9.18580 10.81506 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012630 B = 0.002386 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.337539 B =11730.867942 C =13662.558025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.186 3.814 3 N -0.481 5.481 4 C -0.016 4.016 5 C 0.140 3.860 6 N -0.674 5.674 7 C 0.075 3.925 8 H 0.064 0.936 9 C -0.130 4.130 10 C 0.140 3.860 11 H 0.073 0.927 12 C -0.166 4.166 13 N -0.620 5.620 14 C 0.550 3.450 15 O -0.515 6.515 16 C -0.118 4.118 17 S -0.142 6.142 18 C -0.520 4.520 19 H 0.088 0.912 20 C 0.095 3.905 21 N -0.881 5.881 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C 0.109 3.891 27 C -0.050 4.050 28 O -0.203 6.203 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.051 0.949 34 H 0.351 0.649 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.056 0.944 38 H 0.057 0.943 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.270 0.730 43 H 0.082 0.918 44 H 0.066 0.934 45 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.608 9.129 3.441 29.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.021 4.021 3 N -0.212 5.212 4 C -0.136 4.136 5 C 0.011 3.989 6 N -0.307 5.307 7 C -0.035 4.035 8 H 0.082 0.918 9 C -0.168 4.168 10 C 0.036 3.964 11 H 0.091 0.909 12 C -0.223 4.223 13 N -0.358 5.358 14 C 0.339 3.661 15 O -0.390 6.390 16 C -0.268 4.268 17 S 0.084 5.916 18 C -0.667 4.667 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.518 5.518 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.200 1.200 25 H -0.159 1.159 26 C -0.015 4.015 27 C -0.121 4.121 28 O -0.089 6.089 29 H 0.106 0.894 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.111 0.889 33 H 0.069 0.931 34 H 0.170 0.830 35 H 0.106 0.894 36 H 0.100 0.900 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.109 0.891 40 H 0.112 0.888 41 H 0.114 0.886 42 H 0.080 0.920 43 H 0.100 0.900 44 H 0.085 0.915 45 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -26.287 9.906 2.187 28.177 hybrid contribution -0.184 -0.692 1.036 1.259 sum -26.471 9.215 3.223 28.214 Atomic orbital electron populations 1.20235 0.81411 1.04730 1.04982 1.26277 0.96531 0.78711 1.00599 1.70286 1.01715 1.30463 1.18765 1.21530 0.92646 0.92884 1.06491 1.20201 0.92097 0.96437 0.90154 1.60422 1.08034 1.45952 1.16258 1.22519 0.90438 0.92592 0.97951 0.91769 1.23089 0.96010 1.00336 0.97359 1.21820 0.90462 0.87798 0.96336 0.90902 1.22175 1.05012 1.01229 0.93896 1.48475 1.14983 1.25648 1.46695 1.19914 0.79133 0.86154 0.80941 1.90637 1.57371 1.56494 1.34495 1.23268 1.02566 0.97130 1.03850 1.84760 1.11636 1.33308 1.61907 1.22310 1.05375 1.07797 1.31251 0.89424 1.24715 0.97345 0.94089 0.95197 1.69938 1.23140 1.17304 1.41371 0.86730 0.82315 0.79993 0.82795 1.19231 1.19974 1.15904 1.22007 0.88572 0.97330 0.93579 1.24900 0.84782 0.96244 1.06212 1.84472 1.17102 1.37730 1.69632 0.89387 0.88605 0.88554 0.88893 0.93109 0.82998 0.89388 0.90049 0.92538 0.92454 0.89079 0.88756 0.88597 0.91968 0.89960 0.91524 0.76512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.23 10.51 36.00 0.38 0.15 16 2 C 0.19 1.59 8.34 -12.95 -0.11 1.48 16 3 N -0.48 -4.90 11.29 -7.36 -0.08 -4.98 16 4 C -0.02 -0.15 6.62 -82.81 -0.55 -0.70 16 5 C 0.14 1.11 6.08 -4.97 -0.03 1.08 16 6 N -0.67 -5.54 6.28 -106.05 -0.67 -6.21 16 7 C 0.08 0.63 3.24 -65.87 -0.21 0.42 16 8 H 0.06 0.49 7.89 -51.93 -0.41 0.08 16 9 C -0.13 -1.09 5.94 -24.47 -0.15 -1.24 16 10 C 0.14 1.61 3.77 -66.30 -0.25 1.36 16 11 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 12 C -0.17 -2.08 8.71 37.16 0.32 -1.75 16 13 N -0.62 -8.69 3.24 -162.93 -0.53 -9.22 16 14 C 0.55 10.16 7.65 -10.98 -0.08 10.08 16 15 O -0.52 -11.09 13.51 5.56 0.08 -11.01 16 16 C -0.12 -2.35 5.35 36.01 0.19 -2.16 16 17 S -0.14 -3.65 18.55 -107.50 -1.99 -5.64 16 18 C -0.52 -15.04 10.04 30.94 0.31 -14.73 16 19 H 0.09 2.64 8.03 -52.48 -0.42 2.22 16 20 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 21 N -0.88 -26.66 13.97 55.49 0.78 -25.88 16 22 Si 0.86 21.92 27.74 -169.99 -4.72 17.20 16 23 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.27 -6.76 7.11 56.52 0.40 -6.35 16 25 H -0.24 -6.01 6.74 56.52 0.38 -5.63 16 26 C 0.11 1.20 6.17 -3.07 -0.02 1.18 16 27 C -0.05 -0.43 12.08 29.35 0.35 -0.08 16 28 O -0.20 -1.90 10.78 5.35 0.06 -1.84 16 29 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.09 0.66 8.13 -51.93 -0.42 0.24 16 33 H 0.05 0.40 8.08 -51.93 -0.42 -0.02 16 34 H 0.35 2.84 8.49 -39.29 -0.33 2.50 16 35 H 0.09 0.80 8.07 -51.93 -0.42 0.38 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.09 1.44 5.89 -51.93 -0.31 1.13 16 40 H 0.09 1.77 8.14 -51.92 -0.42 1.34 16 41 H 0.10 1.82 8.14 -51.91 -0.42 1.40 16 42 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 43 H 0.08 0.96 8.03 -51.93 -0.42 0.54 16 44 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.22 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 386.72 15.07 5.83 5.83 Total: -1.00 -35.46 386.72 -8.14 -43.60 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -6.95 Total: 0.36 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: 0.07 Total: -2.21 kcal Atomic # 7 Polarization: -45.78 SS G_CDS: -0.50 Total: -46.29 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: 0.13 Total: -12.86 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.72 Total: 17.20 kcal Atomic # 16 Polarization: -3.65 SS G_CDS: -1.99 Total: -5.64 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.46 -8.14 -43.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700829426.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.397 kcal (2) G-P(sol) polarization free energy of solvation -35.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds