Wall clock time and date at job start Tue Mar 31 2020 22:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30256 * 125.62092 * 2 1 4 4 C 1.34477 * 108.70623 * 180.14737 * 3 2 1 5 5 C 1.50701 * 126.16924 * 179.82863 * 4 3 2 6 6 N 1.46907 * 109.46668 * 274.69317 * 5 4 3 7 7 C 1.46907 * 110.99427 * 180.02562 * 6 5 4 8 8 H 1.09003 * 110.63925 * 323.30677 * 7 6 5 9 9 C 1.55157 * 110.71653 * 199.97435 * 7 6 5 10 10 C 1.55121 * 101.48653 * 205.96924 * 9 7 6 11 11 H 1.08999 * 110.50219 * 278.45440 * 10 9 7 12 12 C 1.52997 * 110.34363 * 156.05958 * 10 9 7 13 13 N 1.47426 * 104.71990 * 37.29538 * 10 9 7 14 14 C 1.34780 * 125.64500 * 155.82117 * 13 10 9 15 15 O 1.21280 * 120.00423 * 359.71076 * 14 13 10 16 16 C 1.50701 * 119.99795 * 179.71753 * 14 13 10 17 17 S 1.81002 * 109.47156 * 179.97438 * 16 14 13 18 18 C 1.76193 * 100.00049 * 180.02562 * 17 16 14 19 19 H 1.08005 * 120.00026 * 359.97438 * 18 17 16 20 20 C 1.38806 * 120.00056 * 180.02562 * 18 17 16 21 21 N 1.31631 * 120.00121 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 119.99856 * 0.02562 * 20 18 17 23 23 H 1.48489 * 109.47437 * 89.99924 * 22 20 18 24 24 H 1.48500 * 109.46931 * 210.00082 * 22 20 18 25 25 H 1.48503 * 109.46655 * 329.99597 * 22 20 18 26 26 C 1.47021 * 108.70691 * 335.55266 * 13 10 9 27 27 C 1.34332 * 107.66445 * 359.56647 * 4 3 2 28 28 O 1.33966 * 125.62034 * 179.66361 * 2 1 3 29 29 H 1.09000 * 109.46905 * 180.31332 * 1 2 3 30 30 H 1.09002 * 109.47296 * 300.31102 * 1 2 3 31 31 H 1.08996 * 109.47498 * 60.31086 * 1 2 3 32 32 H 1.08997 * 109.47059 * 154.69477 * 5 4 3 33 33 H 1.08997 * 109.47099 * 34.68601 * 5 4 3 34 34 H 1.00899 * 111.00191 * 56.05005 * 6 5 4 35 35 H 1.09007 * 111.00277 * 324.21000 * 9 7 6 36 36 H 1.09003 * 111.00336 * 88.02064 * 9 7 6 37 37 H 1.09004 * 109.47403 * 303.28246 * 12 10 9 38 38 H 1.09000 * 109.47355 * 63.28470 * 12 10 9 39 39 H 1.09005 * 109.47336 * 183.28674 * 12 10 9 40 40 H 1.09002 * 109.47060 * 299.99722 * 16 14 13 41 41 H 1.09001 * 109.47380 * 59.99809 * 16 14 13 42 42 H 0.96999 * 120.00138 * 179.97438 * 21 20 18 43 43 H 1.08997 * 109.87932 * 120.69869 * 26 13 10 44 44 H 1.08992 * 109.88291 * 241.71841 * 26 13 10 45 45 H 1.07999 * 126.44296 * 180.27694 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6676 -0.0033 5 6 4.7570 1.5728 -0.0081 6 7 5.0763 1.9555 -1.3900 7 6 6.2487 2.8396 -1.4338 8 1 6.2510 3.5174 -0.5800 9 6 6.2901 3.6308 -2.7678 10 6 7.8081 3.9163 -2.9107 11 1 8.0928 4.7786 -2.3079 12 6 8.1696 4.1491 -4.3791 13 7 8.4675 2.6978 -2.4069 14 6 9.7062 2.2815 -2.7367 15 8 10.3757 2.9269 -3.5152 16 6 10.2593 1.0138 -2.1383 17 16 11.9298 0.7259 -2.7726 18 6 12.3212 -0.7738 -1.9346 19 1 11.6013 -1.2225 -1.2661 20 6 13.5550 -1.3779 -2.1327 21 7 13.8476 -2.4980 -1.5062 22 14 14.8009 -0.6007 -3.2873 23 1 15.6620 0.3396 -2.5261 24 1 15.6432 -1.6626 -3.8940 25 1 14.0878 0.1387 -4.3597 26 6 7.5526 2.0154 -1.4801 27 6 3.5698 -0.6756 0.0044 28 8 2.2872 -1.0890 0.0064 29 1 -0.3633 -1.0277 0.0056 30 1 -0.3634 0.5187 0.8872 31 1 -0.3634 0.5090 -0.8927 32 1 5.6068 1.0488 0.4294 33 1 4.5417 2.4674 0.5761 34 1 4.2816 2.3858 -1.8388 35 1 5.9240 3.0220 -3.5946 36 1 5.7247 4.5595 -2.6890 37 1 7.8652 3.2849 -4.9696 38 1 7.6545 5.0378 -4.7436 39 1 9.2466 4.2902 -4.4702 40 1 10.2938 1.1093 -1.0530 41 1 9.6186 0.1745 -2.4089 42 1 14.7097 -2.9204 -1.6450 43 1 7.3421 1.0087 -1.8412 44 1 7.9989 1.9673 -0.4870 45 1 4.4469 -1.3057 0.0084 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700829426.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:04 Heat of formation + Delta-G solvation = -33.532196 kcal Electronic energy + Delta-G solvation = -26329.013816 eV Core-core repulsion = 22473.402836 eV Total energy + Delta-G solvation = -3855.610980 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.28164 -41.30565 -38.98790 -36.88097 -35.33338 -34.67822 -33.45580 -33.14355 -30.92977 -30.23464 -28.61838 -27.85795 -26.79340 -26.21201 -23.30976 -22.52211 -22.07050 -21.75576 -20.42337 -19.42443 -18.18708 -18.00255 -17.75670 -17.63050 -17.12712 -16.55121 -16.37173 -16.05386 -15.78461 -15.70754 -15.12464 -14.94582 -14.76287 -14.71893 -14.41246 -13.99916 -13.86524 -13.63675 -13.45838 -13.42531 -13.30670 -13.23563 -13.04353 -12.94308 -12.86015 -12.62932 -12.34026 -12.08029 -11.96147 -11.87007 -11.78003 -11.55160 -11.17591 -10.67033 -10.54529 -9.75711 -9.68633 -9.49576 -9.00807 -8.52082 -6.22958 0.51175 0.96207 1.30852 1.44947 1.52577 1.54495 1.59095 1.89455 2.05643 2.24649 2.67268 2.85991 2.99054 3.19977 3.43399 3.48881 3.80564 3.85695 4.02038 4.08111 4.14640 4.21420 4.34458 4.38328 4.43478 4.47068 4.54500 4.63688 4.66647 4.69924 4.73508 4.78633 4.85437 4.88993 4.95930 4.97070 5.07241 5.20156 5.25673 5.38576 5.57373 5.70283 5.93344 6.10608 6.29131 6.40148 6.76367 6.92933 7.11253 8.60325 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012630 B = 0.002386 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.337539 B =11730.867942 C =13662.558025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.181 3.819 3 N -0.509 5.509 4 C -0.030 4.030 5 C 0.145 3.855 6 N -0.677 5.677 7 C 0.088 3.912 8 H 0.082 0.918 9 C -0.115 4.115 10 C 0.132 3.868 11 H 0.085 0.915 12 C -0.161 4.161 13 N -0.612 5.612 14 C 0.549 3.451 15 O -0.553 6.553 16 C -0.103 4.103 17 S -0.172 6.172 18 C -0.528 4.528 19 H 0.061 0.939 20 C 0.046 3.954 21 N -0.916 5.916 22 Si 0.914 3.086 23 H -0.262 1.262 24 H -0.258 1.258 25 H -0.237 1.237 26 C 0.101 3.899 27 C -0.061 4.061 28 O -0.215 6.215 29 H 0.103 0.897 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.100 0.900 33 H 0.054 0.946 34 H 0.354 0.646 35 H 0.083 0.917 36 H 0.112 0.888 37 H 0.043 0.957 38 H 0.086 0.914 39 H 0.056 0.944 40 H 0.107 0.893 41 H 0.105 0.895 42 H 0.277 0.723 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.554 10.509 3.515 31.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.026 4.026 3 N -0.240 5.240 4 C -0.149 4.149 5 C 0.016 3.984 6 N -0.310 5.310 7 C -0.022 4.022 8 H 0.100 0.900 9 C -0.154 4.154 10 C 0.029 3.971 11 H 0.103 0.897 12 C -0.218 4.218 13 N -0.347 5.347 14 C 0.337 3.663 15 O -0.432 6.432 16 C -0.254 4.254 17 S 0.054 5.946 18 C -0.676 4.676 19 H 0.080 0.920 20 C -0.160 4.160 21 N -0.554 5.554 22 Si 0.736 3.264 23 H -0.186 1.186 24 H -0.183 1.183 25 H -0.161 1.161 26 C -0.022 4.022 27 C -0.132 4.132 28 O -0.102 6.102 29 H 0.122 0.878 30 H 0.126 0.874 31 H 0.126 0.874 32 H 0.118 0.882 33 H 0.072 0.928 34 H 0.174 0.826 35 H 0.101 0.899 36 H 0.130 0.870 37 H 0.062 0.938 38 H 0.105 0.895 39 H 0.075 0.925 40 H 0.125 0.875 41 H 0.123 0.877 42 H 0.087 0.913 43 H 0.094 0.906 44 H 0.094 0.906 45 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -28.285 11.290 2.284 30.541 hybrid contribution 0.223 -1.113 1.081 1.568 sum -28.062 10.177 3.365 30.040 Atomic orbital electron populations 1.20480 0.78631 1.06151 1.06046 1.27197 0.98009 0.78212 0.99169 1.70292 1.02277 1.31321 1.20083 1.21799 0.92925 0.93418 1.06778 1.20207 0.91876 0.96401 0.89951 1.60345 1.08043 1.46032 1.16574 1.22403 0.89056 0.92157 0.98628 0.90005 1.23031 0.93560 1.01690 0.97081 1.22116 0.92316 0.86970 0.95683 0.89723 1.22088 1.02964 1.02055 0.94738 1.48439 1.13710 1.26379 1.46191 1.19550 0.80499 0.85455 0.80832 1.90636 1.58882 1.57390 1.36250 1.23220 0.98896 0.98805 1.04455 1.84660 1.16282 1.31352 1.62257 1.22441 1.05072 1.09089 1.30966 0.92040 1.25563 0.99184 0.94574 0.96670 1.70013 1.24107 1.18522 1.42771 0.85866 0.80087 0.79546 0.80870 1.18622 1.18266 1.16143 1.22261 0.89468 0.97343 0.93155 1.25335 0.85177 0.96561 1.06112 1.84482 1.17531 1.38302 1.69878 0.87823 0.87370 0.87430 0.88193 0.92827 0.82639 0.89860 0.86980 0.93758 0.89509 0.92549 0.87465 0.87725 0.91346 0.90598 0.90585 0.74700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.35 10.51 71.23 0.75 0.40 16 2 C 0.18 2.89 8.34 88.34 0.74 3.63 16 3 N -0.51 -9.78 11.29 -291.99 -3.30 -13.08 16 4 C -0.03 -0.53 6.62 41.26 0.27 -0.26 16 5 C 0.14 2.01 6.08 85.56 0.52 2.53 16 6 N -0.68 -9.48 6.28 -489.42 -3.07 -12.56 16 7 C 0.09 1.20 3.24 46.10 0.15 1.35 16 8 H 0.08 0.92 7.89 -2.39 -0.02 0.90 16 9 C -0.12 -1.56 5.94 32.06 0.19 -1.37 16 10 C 0.13 2.73 3.77 45.54 0.17 2.91 16 11 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 12 C -0.16 -3.84 8.71 71.98 0.63 -3.21 16 13 N -0.61 -16.23 3.24 -787.76 -2.55 -18.78 16 14 C 0.55 20.05 7.65 87.66 0.67 20.72 16 15 O -0.55 -24.02 13.51 -3.03 -0.04 -24.06 16 16 C -0.10 -4.09 5.35 71.24 0.38 -3.71 16 17 S -0.17 -8.88 18.55 -56.49 -1.05 -9.93 16 18 C -0.53 -31.12 10.04 67.96 0.68 -30.44 16 19 H 0.06 3.82 8.03 -2.91 -0.02 3.79 16 20 C 0.05 2.70 5.50 84.86 0.47 3.16 16 21 N -0.92 -56.09 13.97 21.65 0.30 -55.79 16 22 Si 0.91 45.43 27.74 68.60 1.90 47.33 16 23 H -0.26 -12.65 7.11 99.48 0.71 -11.94 16 24 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 25 H -0.24 -11.82 6.74 99.48 0.67 -11.14 16 26 C 0.10 2.00 6.17 86.73 0.54 2.54 16 27 C -0.06 -1.00 12.08 66.93 0.81 -0.19 16 28 O -0.22 -3.85 10.78 -3.76 -0.04 -3.89 16 29 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.10 1.22 8.13 -2.39 -0.02 1.20 16 33 H 0.05 0.72 8.08 -2.39 -0.02 0.70 16 34 H 0.35 4.82 8.49 -89.69 -0.76 4.06 16 35 H 0.08 1.27 8.07 -2.38 -0.02 1.25 16 36 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.04 1.14 8.14 -2.38 -0.02 1.12 16 38 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.06 1.78 5.89 -2.38 -0.01 1.76 16 40 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16 41 H 0.10 3.95 8.14 -2.40 -0.02 3.93 16 42 H 0.28 15.66 8.31 -92.71 -0.77 14.89 16 43 H 0.08 1.64 8.03 -2.39 -0.02 1.62 16 44 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.24 2.57 8.06 -2.91 -0.02 2.54 16 Total: -1.00 -78.18 386.72 -0.69 -78.87 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: 0.20 Total: 13.82 kcal Atomic # 6 Polarization: -8.89 SS G_CDS: 6.96 Total: -1.93 kcal Atomic # 7 Polarization: -91.58 SS G_CDS: -8.62 Total: -100.20 kcal Atomic # 8 Polarization: -27.87 SS G_CDS: -0.08 Total: -27.95 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 1.90 Total: 47.33 kcal Atomic # 16 Polarization: -8.88 SS G_CDS: -1.05 Total: -9.93 kcal Total: -78.18 -0.69 -78.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700829426.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.337 kcal (2) G-P(sol) polarization free energy of solvation -78.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds