Wall clock time and date at job start Tue Mar 31 2020 22:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30247 * 125.61966 * 2 1 4 4 C 1.34480 * 108.70671 * 180.02562 * 3 2 1 5 5 C 1.50692 * 126.17207 * 180.02562 * 4 3 2 6 6 N 1.46907 * 109.47229 * 275.02537 * 5 4 3 7 7 C 1.46895 * 111.00201 * 180.02562 * 6 5 4 8 8 H 1.09001 * 110.91878 * 31.09313 * 7 6 5 9 9 C 1.55157 * 111.00422 * 155.00112 * 7 6 5 10 10 C 1.54321 * 103.10033 * 153.66253 * 9 7 6 11 11 H 1.09004 * 109.87910 * 218.29695 * 10 9 7 12 12 C 1.53005 * 109.88173 * 97.28990 * 10 9 7 13 13 N 1.47019 * 107.27531 * 337.71659 * 10 9 7 14 14 C 1.34778 * 125.65277 * 178.97403 * 13 10 9 15 15 O 1.21279 * 119.99640 * 0.02562 * 14 13 10 16 16 C 1.50696 * 120.00123 * 180.02562 * 14 13 10 17 17 S 1.81003 * 109.46867 * 180.02562 * 16 14 13 18 18 C 1.76202 * 99.99872 * 180.02562 * 17 16 14 19 19 H 1.08002 * 119.99807 * 0.02562 * 18 17 16 20 20 C 1.38795 * 120.00027 * 179.97438 * 18 17 16 21 21 N 1.31634 * 120.00229 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 120.00023 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46762 * 90.00486 * 22 20 18 24 24 H 1.48498 * 109.47312 * 210.00399 * 22 20 18 25 25 H 1.48494 * 109.46983 * 330.00580 * 22 20 18 26 26 C 1.47431 * 108.70142 * 358.94050 * 13 10 9 27 27 C 1.34329 * 107.66145 * 0.26280 * 4 3 2 28 28 O 1.33962 * 125.61856 * 180.02562 * 2 1 3 29 29 H 1.09008 * 109.46766 * 90.00233 * 1 2 3 30 30 H 1.08998 * 109.47390 * 209.99939 * 1 2 3 31 31 H 1.08999 * 109.47476 * 330.00453 * 1 2 3 32 32 H 1.09002 * 109.47393 * 155.02809 * 5 4 3 33 33 H 1.09000 * 109.47395 * 35.02027 * 5 4 3 34 34 H 1.00900 * 110.99427 * 56.04181 * 6 5 4 35 35 H 1.09002 * 110.72219 * 35.20949 * 9 7 6 36 36 H 1.09003 * 110.71618 * 272.11562 * 9 7 6 37 37 H 1.09003 * 109.46934 * 59.99729 * 12 10 9 38 38 H 1.09004 * 109.47312 * 179.97438 * 12 10 9 39 39 H 1.09000 * 109.46935 * 299.99611 * 12 10 9 40 40 H 1.08998 * 109.47078 * 300.00341 * 16 14 13 41 41 H 1.08989 * 109.46870 * 60.00231 * 16 14 13 42 42 H 0.96995 * 120.00475 * 179.97438 * 21 20 18 43 43 H 1.08999 * 110.36190 * 142.96411 * 26 13 10 44 44 H 1.08999 * 110.36356 * 265.28933 * 26 13 10 45 45 H 1.08001 * 126.44495 * 179.74078 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6676 -0.0006 5 6 4.7570 1.5727 -0.0002 6 7 5.0754 1.9647 -1.3798 7 6 6.2477 2.8490 -1.4185 8 1 6.9375 2.6166 -0.6071 9 6 6.9601 2.7681 -2.7945 10 6 7.6525 4.1423 -2.9113 11 1 7.5963 4.4994 -3.9397 12 6 9.1160 4.0259 -2.4803 13 7 6.9379 5.0683 -2.0207 14 6 7.2481 6.3650 -1.8232 15 8 8.1891 6.8591 -2.4073 16 6 6.4257 7.2007 -0.8765 17 16 7.0873 8.8848 -0.8283 18 6 5.9710 9.6193 0.3203 19 1 5.1775 9.0293 0.7547 20 6 6.1120 10.9557 0.6674 21 7 7.0794 11.6746 0.1382 22 14 4.9281 11.7345 1.8845 23 1 5.4602 11.5777 3.2621 24 1 4.7774 13.1788 1.5736 25 1 3.6057 11.0662 1.7855 26 6 5.8251 4.3439 -1.3799 27 6 3.5698 -0.6756 -0.0068 28 8 2.2872 -1.0890 -0.0005 29 1 -0.3633 0.0000 -1.0278 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5137 32 1 5.6072 1.0458 0.4331 33 1 4.5422 2.4634 0.5902 34 1 4.2803 2.3979 -1.8251 35 1 6.2349 2.6322 -3.5969 36 1 7.6957 1.9637 -2.8012 37 1 9.6280 3.3094 -3.1226 38 1 9.5985 4.9996 -2.5658 39 1 9.1641 3.6857 -1.4459 40 1 5.3914 7.2267 -1.2195 41 1 6.4665 6.7652 0.1217 42 1 7.1778 12.6087 0.3805 43 1 5.7000 4.6758 -0.3493 44 1 4.9028 4.4917 -1.9417 45 1 4.4469 -1.3058 -0.0128 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700829428.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:07 Heat of formation + Delta-G solvation = -9.419703 kcal Electronic energy + Delta-G solvation = -26281.139042 eV Core-core repulsion = 22426.573659 eV Total energy + Delta-G solvation = -3854.565384 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.67802 -40.12776 -37.81946 -36.08345 -34.60518 -32.63186 -32.42348 -32.14703 -30.04008 -28.71879 -27.99226 -25.89613 -25.51480 -25.37442 -22.49784 -21.92073 -21.51957 -20.81367 -18.96494 -17.69738 -17.54655 -17.14170 -16.70041 -16.33429 -15.83074 -15.21283 -14.94256 -14.80048 -14.72877 -14.44940 -13.99574 -13.94949 -13.54538 -13.49894 -13.31193 -13.11057 -13.03679 -12.81601 -12.57974 -12.48800 -12.41416 -12.00327 -11.77356 -11.52768 -11.47923 -11.06948 -11.05359 -11.00179 -10.88964 -10.75437 -10.71004 -9.81165 -9.38861 -9.16047 -9.06139 -8.80917 -8.48367 -8.22959 -6.49683 -6.21103 -3.91724 1.09634 2.22539 2.40003 2.89712 3.07909 3.22691 3.25896 3.30631 3.52074 3.62178 3.92857 4.20655 4.30517 4.36056 4.46349 4.55988 4.74705 4.85201 4.92335 5.00097 5.05997 5.08458 5.13375 5.13966 5.18468 5.29661 5.36328 5.44733 5.52514 5.56585 5.58261 5.62291 5.65215 5.73441 5.81094 5.89648 5.91857 6.09374 6.14049 6.31770 6.54777 6.60871 6.91766 7.39216 7.60002 7.69643 8.35775 8.58707 9.24133 10.86324 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009995 B = 0.002499 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2800.667117 B =11203.809005 C =13687.389399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.189 3.811 3 N -0.478 5.478 4 C -0.012 4.012 5 C 0.138 3.862 6 N -0.670 5.670 7 C 0.076 3.924 8 H 0.096 0.904 9 C -0.113 4.113 10 C 0.135 3.865 11 H 0.074 0.926 12 C -0.163 4.163 13 N -0.619 5.619 14 C 0.549 3.451 15 O -0.512 6.512 16 C -0.147 4.147 17 S -0.060 6.060 18 C -0.535 4.535 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C 0.075 3.925 27 C -0.057 4.057 28 O -0.205 6.205 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.091 0.909 33 H 0.054 0.946 34 H 0.350 0.650 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.061 0.939 38 H 0.074 0.926 39 H 0.054 0.946 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.268 0.732 43 H 0.076 0.924 44 H 0.068 0.932 45 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.744 -28.917 -1.434 30.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.018 4.018 3 N -0.209 5.209 4 C -0.132 4.132 5 C 0.009 3.991 6 N -0.301 5.301 7 C -0.035 4.035 8 H 0.114 0.886 9 C -0.152 4.152 10 C 0.031 3.969 11 H 0.092 0.908 12 C -0.221 4.221 13 N -0.357 5.357 14 C 0.338 3.662 15 O -0.386 6.386 16 C -0.298 4.298 17 S 0.167 5.833 18 C -0.683 4.683 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.207 1.207 25 H -0.197 1.197 26 C -0.051 4.051 27 C -0.128 4.128 28 O -0.092 6.092 29 H 0.111 0.889 30 H 0.106 0.894 31 H 0.120 0.880 32 H 0.109 0.891 33 H 0.073 0.927 34 H 0.169 0.831 35 H 0.097 0.903 36 H 0.103 0.897 37 H 0.080 0.920 38 H 0.093 0.907 39 H 0.073 0.927 40 H 0.105 0.895 41 H 0.105 0.895 42 H 0.078 0.922 43 H 0.095 0.905 44 H 0.086 0.914 45 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -7.128 -27.904 -2.430 28.902 hybrid contribution -1.942 0.064 1.843 2.679 sum -9.071 -27.840 -0.586 29.286 Atomic orbital electron populations 1.20267 0.81323 1.05154 1.04775 1.26312 0.96552 0.78610 1.00340 1.70355 1.01714 1.30384 1.18455 1.21568 0.92755 0.92838 1.06017 1.20215 0.91968 0.96546 0.90420 1.60613 1.08441 1.44807 1.16286 1.22866 0.92675 0.88935 0.98974 0.88596 1.22693 0.99676 0.95868 0.96945 1.21522 0.92503 0.88466 0.94417 0.90798 1.22153 0.95454 1.03370 1.01129 1.48475 1.31583 1.09497 1.46162 1.19999 0.84466 0.79640 0.82100 1.90690 1.29026 1.70431 1.48463 1.23515 1.02524 1.03497 1.00234 1.85381 1.42192 0.96808 1.58920 1.22854 1.17319 0.98445 1.29665 0.90991 1.24991 0.95991 0.96067 0.96528 1.70017 1.30233 1.08398 1.41634 0.86170 0.80501 0.78337 0.80514 1.20268 1.20728 1.19681 1.23090 0.90596 0.92645 0.98754 1.24788 0.84782 0.96140 1.07101 1.84450 1.17049 1.37818 1.69843 0.88863 0.89387 0.88045 0.89053 0.92740 0.83054 0.90251 0.89679 0.92001 0.90718 0.92699 0.89458 0.89496 0.92183 0.90515 0.91354 0.76757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.25 10.51 36.01 0.38 0.13 16 2 C 0.19 1.62 8.34 -12.95 -0.11 1.51 16 3 N -0.48 -5.06 11.29 -7.36 -0.08 -5.15 16 4 C -0.01 -0.11 6.62 -82.82 -0.55 -0.66 16 5 C 0.14 1.08 6.09 -4.98 -0.03 1.05 16 6 N -0.67 -5.42 6.41 -105.45 -0.68 -6.10 16 7 C 0.08 0.66 3.40 -65.30 -0.22 0.44 16 8 H 0.10 0.81 7.83 -51.93 -0.41 0.40 16 9 C -0.11 -0.99 6.18 -24.90 -0.15 -1.15 16 10 C 0.13 1.64 3.49 -66.95 -0.23 1.41 16 11 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 12 C -0.16 -1.99 9.06 37.16 0.34 -1.65 16 13 N -0.62 -9.09 3.08 -162.71 -0.50 -9.60 16 14 C 0.55 10.79 7.65 -10.99 -0.08 10.71 16 15 O -0.51 -11.89 14.78 5.56 0.08 -11.81 16 16 C -0.15 -3.10 5.16 36.00 0.19 -2.91 16 17 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 18 C -0.53 -15.43 9.50 30.94 0.29 -15.14 16 19 H 0.07 1.97 7.80 -52.49 -0.41 1.57 16 20 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 21 N -0.87 -26.39 13.22 55.49 0.73 -25.65 16 22 Si 0.92 21.62 29.55 -169.99 -5.02 16.60 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 25 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 26 C 0.07 0.84 6.31 -2.26 -0.01 0.83 16 27 C -0.06 -0.43 12.08 29.35 0.35 -0.08 16 28 O -0.21 -1.77 10.78 5.36 0.06 -1.71 16 29 H 0.09 0.29 8.14 -51.92 -0.42 -0.13 16 30 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.09 0.56 8.09 -51.93 -0.42 0.14 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.35 3.07 8.20 -39.29 -0.32 2.75 16 35 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.08 0.64 7.83 -51.93 -0.41 0.24 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.07 1.16 6.78 -51.93 -0.35 0.81 16 39 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 41 H 0.09 1.71 7.85 -51.92 -0.41 1.30 16 42 H 0.27 7.57 8.31 -40.82 -0.34 7.24 16 43 H 0.08 0.88 7.48 -51.93 -0.39 0.49 16 44 H 0.07 0.74 7.76 -51.93 -0.40 0.34 16 45 H 0.22 0.87 8.06 -52.49 -0.42 0.44 16 LS Contribution 390.15 15.07 5.88 5.88 Total: -1.00 -36.31 390.15 -8.56 -44.87 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -6.88 Total: 0.01 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: 0.06 Total: -3.48 kcal Atomic # 7 Polarization: -45.96 SS G_CDS: -0.53 Total: -46.49 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: 0.14 Total: -13.53 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -36.31 -8.56 -44.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700829428.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.451 kcal (2) G-P(sol) polarization free energy of solvation -36.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds