Wall clock time and date at job start Tue Mar 31 2020 22:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30247 * 125.61966 * 2 1 4 4 C 1.34480 * 108.70671 * 180.02562 * 3 2 1 5 5 C 1.50692 * 126.17207 * 180.02562 * 4 3 2 6 6 N 1.46907 * 109.47229 * 275.02537 * 5 4 3 7 7 C 1.46895 * 111.00201 * 180.02562 * 6 5 4 8 8 H 1.09001 * 110.91878 * 31.09313 * 7 6 5 9 9 C 1.55157 * 111.00422 * 155.00112 * 7 6 5 10 10 C 1.54321 * 103.10033 * 153.66253 * 9 7 6 11 11 H 1.09004 * 109.87910 * 218.29695 * 10 9 7 12 12 C 1.53005 * 109.88173 * 97.28990 * 10 9 7 13 13 N 1.47019 * 107.27531 * 337.71659 * 10 9 7 14 14 C 1.34778 * 125.65277 * 178.97403 * 13 10 9 15 15 O 1.21279 * 119.99640 * 0.02562 * 14 13 10 16 16 C 1.50696 * 120.00123 * 180.02562 * 14 13 10 17 17 S 1.81003 * 109.46867 * 180.02562 * 16 14 13 18 18 C 1.76202 * 99.99872 * 180.02562 * 17 16 14 19 19 H 1.08002 * 119.99807 * 0.02562 * 18 17 16 20 20 C 1.38795 * 120.00027 * 179.97438 * 18 17 16 21 21 N 1.31634 * 120.00229 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 120.00023 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46762 * 90.00486 * 22 20 18 24 24 H 1.48498 * 109.47312 * 210.00399 * 22 20 18 25 25 H 1.48494 * 109.46983 * 330.00580 * 22 20 18 26 26 C 1.47431 * 108.70142 * 358.94050 * 13 10 9 27 27 C 1.34329 * 107.66145 * 0.26280 * 4 3 2 28 28 O 1.33962 * 125.61856 * 180.02562 * 2 1 3 29 29 H 1.09008 * 109.46766 * 90.00233 * 1 2 3 30 30 H 1.08998 * 109.47390 * 209.99939 * 1 2 3 31 31 H 1.08999 * 109.47476 * 330.00453 * 1 2 3 32 32 H 1.09002 * 109.47393 * 155.02809 * 5 4 3 33 33 H 1.09000 * 109.47395 * 35.02027 * 5 4 3 34 34 H 1.00900 * 110.99427 * 56.04181 * 6 5 4 35 35 H 1.09002 * 110.72219 * 35.20949 * 9 7 6 36 36 H 1.09003 * 110.71618 * 272.11562 * 9 7 6 37 37 H 1.09003 * 109.46934 * 59.99729 * 12 10 9 38 38 H 1.09004 * 109.47312 * 179.97438 * 12 10 9 39 39 H 1.09000 * 109.46935 * 299.99611 * 12 10 9 40 40 H 1.08998 * 109.47078 * 300.00341 * 16 14 13 41 41 H 1.08989 * 109.46870 * 60.00231 * 16 14 13 42 42 H 0.96995 * 120.00475 * 179.97438 * 21 20 18 43 43 H 1.08999 * 110.36190 * 142.96411 * 26 13 10 44 44 H 1.08999 * 110.36356 * 265.28933 * 26 13 10 45 45 H 1.08001 * 126.44495 * 179.74078 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6676 -0.0006 5 6 4.7570 1.5727 -0.0002 6 7 5.0754 1.9647 -1.3798 7 6 6.2477 2.8490 -1.4185 8 1 6.9375 2.6166 -0.6071 9 6 6.9601 2.7681 -2.7945 10 6 7.6525 4.1423 -2.9113 11 1 7.5963 4.4994 -3.9397 12 6 9.1160 4.0259 -2.4803 13 7 6.9379 5.0683 -2.0207 14 6 7.2481 6.3650 -1.8232 15 8 8.1891 6.8591 -2.4073 16 6 6.4257 7.2007 -0.8765 17 16 7.0873 8.8848 -0.8283 18 6 5.9710 9.6193 0.3203 19 1 5.1775 9.0293 0.7547 20 6 6.1120 10.9557 0.6674 21 7 7.0794 11.6746 0.1382 22 14 4.9281 11.7345 1.8845 23 1 5.4602 11.5777 3.2621 24 1 4.7774 13.1788 1.5736 25 1 3.6057 11.0662 1.7855 26 6 5.8251 4.3439 -1.3799 27 6 3.5698 -0.6756 -0.0068 28 8 2.2872 -1.0890 -0.0005 29 1 -0.3633 0.0000 -1.0278 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5137 32 1 5.6072 1.0458 0.4331 33 1 4.5422 2.4634 0.5902 34 1 4.2803 2.3979 -1.8251 35 1 6.2349 2.6322 -3.5969 36 1 7.6957 1.9637 -2.8012 37 1 9.6280 3.3094 -3.1226 38 1 9.5985 4.9996 -2.5658 39 1 9.1641 3.6857 -1.4459 40 1 5.3914 7.2267 -1.2195 41 1 6.4665 6.7652 0.1217 42 1 7.1778 12.6087 0.3805 43 1 5.7000 4.6758 -0.3493 44 1 4.9028 4.4917 -1.9417 45 1 4.4469 -1.3058 -0.0128 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700829428.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:07 Heat of formation + Delta-G solvation = -37.537747 kcal Electronic energy + Delta-G solvation = -26282.358332 eV Core-core repulsion = 22426.573659 eV Total energy + Delta-G solvation = -3855.784673 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.26308 -41.31699 -39.03166 -36.89005 -35.32131 -34.61827 -33.42613 -33.13054 -30.81133 -30.24956 -28.57006 -27.69869 -26.80230 -26.10392 -23.56163 -22.52471 -22.13764 -21.67329 -20.36939 -19.57441 -18.22374 -17.99125 -17.73226 -17.25318 -16.96844 -16.90453 -16.30302 -16.03390 -15.72843 -15.64961 -14.99134 -14.83805 -14.62244 -14.36741 -14.27804 -14.12589 -13.90801 -13.85561 -13.59227 -13.34177 -13.20432 -13.14916 -13.07225 -12.91241 -12.89658 -12.61551 -12.35447 -12.16516 -11.89393 -11.76105 -11.60837 -11.50018 -11.17185 -10.92279 -10.33086 -9.81944 -9.72407 -9.44718 -8.71535 -8.37616 -6.16694 0.53561 1.20367 1.40324 1.41737 1.53262 1.53581 1.61076 1.90646 2.03529 2.24240 2.96262 2.98236 3.16594 3.27506 3.51484 3.58630 3.80886 3.86528 4.03516 4.06220 4.10297 4.18624 4.26978 4.35748 4.41920 4.45056 4.56333 4.60624 4.64799 4.68430 4.70287 4.76329 4.87554 4.95852 4.97922 5.04941 5.09704 5.13521 5.31499 5.38039 5.38325 5.50000 5.90432 6.16473 6.21284 6.36359 6.80508 7.03219 7.10018 8.71717 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009995 B = 0.002499 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2800.667117 B =11203.809005 C =13687.389399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.181 3.819 3 N -0.516 5.516 4 C -0.036 4.036 5 C 0.141 3.859 6 N -0.661 5.661 7 C 0.091 3.909 8 H 0.107 0.893 9 C -0.098 4.098 10 C 0.127 3.873 11 H 0.063 0.937 12 C -0.158 4.158 13 N -0.610 5.610 14 C 0.547 3.453 15 O -0.559 6.559 16 C -0.121 4.121 17 S -0.146 6.146 18 C -0.547 4.547 19 H 0.080 0.920 20 C 0.014 3.986 21 N -0.910 5.910 22 Si 0.999 3.001 23 H -0.266 1.266 24 H -0.276 1.276 25 H -0.259 1.259 26 C 0.066 3.934 27 C -0.051 4.051 28 O -0.213 6.213 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.102 0.898 32 H 0.112 0.888 33 H 0.041 0.959 34 H 0.346 0.654 35 H 0.086 0.914 36 H 0.109 0.891 37 H 0.091 0.909 38 H 0.033 0.967 39 H 0.061 0.939 40 H 0.099 0.901 41 H 0.102 0.898 42 H 0.272 0.728 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.363 -31.801 -0.538 33.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.026 4.026 3 N -0.247 5.247 4 C -0.155 4.155 5 C 0.012 3.988 6 N -0.291 5.291 7 C -0.020 4.020 8 H 0.125 0.875 9 C -0.136 4.136 10 C 0.024 3.976 11 H 0.081 0.919 12 C -0.216 4.216 13 N -0.345 5.345 14 C 0.335 3.665 15 O -0.437 6.437 16 C -0.272 4.272 17 S 0.081 5.919 18 C -0.695 4.695 19 H 0.098 0.902 20 C -0.191 4.191 21 N -0.546 5.546 22 Si 0.821 3.179 23 H -0.192 1.192 24 H -0.201 1.201 25 H -0.183 1.183 26 C -0.059 4.059 27 C -0.122 4.122 28 O -0.100 6.100 29 H 0.124 0.876 30 H 0.125 0.875 31 H 0.121 0.879 32 H 0.131 0.869 33 H 0.060 0.940 34 H 0.165 0.835 35 H 0.105 0.895 36 H 0.127 0.873 37 H 0.110 0.890 38 H 0.052 0.948 39 H 0.080 0.920 40 H 0.118 0.882 41 H 0.121 0.879 42 H 0.081 0.919 43 H 0.094 0.906 44 H 0.093 0.907 45 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -8.770 -30.853 -1.535 32.112 hybrid contribution -1.465 0.811 1.514 2.258 sum -10.235 -30.042 -0.021 31.737 Atomic orbital electron populations 1.20468 0.78958 1.06160 1.05880 1.27074 0.97871 0.78248 0.99398 1.70340 1.02800 1.31664 1.19932 1.21810 0.92651 0.93772 1.07301 1.20261 0.92446 0.96161 0.89940 1.60652 1.08052 1.43916 1.16509 1.22779 0.93043 0.86845 0.99352 0.87506 1.22637 1.00012 0.93866 0.97092 1.21792 0.92883 0.89664 0.93244 0.91856 1.22103 0.95272 1.01887 1.02315 1.48403 1.32166 1.08178 1.45725 1.19705 0.83857 0.81189 0.81775 1.90674 1.30881 1.71856 1.50259 1.23311 1.02785 0.99274 1.01842 1.85536 1.44191 1.02542 1.59583 1.23167 1.17437 0.99139 1.29759 0.90191 1.26141 0.97872 0.96551 0.98523 1.70178 1.32283 1.08874 1.43314 0.84944 0.78086 0.77256 0.77632 1.19157 1.20083 1.18312 1.23411 0.89719 0.94265 0.98461 1.25413 0.85227 0.96127 1.05426 1.84469 1.17603 1.38021 1.69901 0.87590 0.87476 0.87892 0.86941 0.94043 0.83463 0.89495 0.87276 0.89029 0.94791 0.92008 0.88226 0.87946 0.91893 0.90599 0.90663 0.73583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.41 10.51 71.24 0.75 0.34 16 2 C 0.18 2.87 8.34 88.34 0.74 3.61 16 3 N -0.52 -10.42 11.29 -292.00 -3.30 -13.72 16 4 C -0.04 -0.60 6.62 41.26 0.27 -0.33 16 5 C 0.14 1.89 6.09 85.55 0.52 2.41 16 6 N -0.66 -8.87 6.41 -487.54 -3.12 -11.99 16 7 C 0.09 1.31 3.40 46.48 0.16 1.47 16 8 H 0.11 1.40 7.83 -2.39 -0.02 1.38 16 9 C -0.10 -1.39 6.18 31.78 0.20 -1.20 16 10 C 0.13 2.93 3.49 45.34 0.16 3.08 16 11 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 12 C -0.16 -3.68 9.06 71.98 0.65 -3.02 16 13 N -0.61 -17.47 3.08 -787.08 -2.43 -19.90 16 14 C 0.55 21.89 7.65 87.66 0.67 22.56 16 15 O -0.56 -27.15 14.78 -3.03 -0.04 -27.19 16 16 C -0.12 -5.16 5.16 71.23 0.37 -4.79 16 17 S -0.15 -8.36 20.57 -56.49 -1.16 -9.52 16 18 C -0.55 -32.03 9.50 67.95 0.65 -31.39 16 19 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 20 C 0.01 0.81 5.49 84.86 0.47 1.28 16 21 N -0.91 -56.66 13.22 21.65 0.29 -56.38 16 22 Si 1.00 44.29 29.55 68.60 2.03 46.31 16 23 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 24 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 25 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 26 C 0.07 1.37 6.31 87.02 0.55 1.92 16 27 C -0.05 -0.65 12.08 66.93 0.81 0.16 16 28 O -0.21 -3.30 10.78 -3.72 -0.04 -3.34 16 29 H 0.11 0.48 8.14 -2.38 -0.02 0.46 16 30 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.11 1.01 8.09 -2.39 -0.02 0.99 16 33 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.35 5.33 8.20 -89.69 -0.74 4.60 16 35 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.11 1.14 7.83 -2.39 -0.02 1.12 16 37 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.03 1.08 6.78 -2.39 -0.02 1.06 16 39 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.10 3.97 8.14 -2.40 -0.02 3.95 16 41 H 0.10 4.01 7.85 -2.40 -0.02 3.99 16 42 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 43 H 0.08 1.62 7.48 -2.39 -0.02 1.60 16 44 H 0.08 1.50 7.76 -2.39 -0.02 1.48 16 45 H 0.25 1.12 8.06 -2.91 -0.02 1.10 16 Total: -1.00 -82.69 390.15 -0.56 -83.25 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: 0.27 Total: 16.38 kcal Atomic # 6 Polarization: -10.85 SS G_CDS: 6.95 Total: -3.90 kcal Atomic # 7 Polarization: -93.43 SS G_CDS: -8.56 Total: -101.99 kcal Atomic # 8 Polarization: -30.45 SS G_CDS: -0.08 Total: -30.53 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.31 kcal Atomic # 16 Polarization: -8.36 SS G_CDS: -1.16 Total: -9.52 kcal Total: -82.69 -0.56 -83.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700829428.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.717 kcal (2) G-P(sol) polarization free energy of solvation -82.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds