Wall clock time and date at job start Tue Mar 31 2020 22:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30258 * 125.61849 * 2 1 4 4 C 1.34485 * 108.70349 * 180.02562 * 3 2 1 5 5 C 1.50690 * 126.16685 * 179.73948 * 4 3 2 6 6 N 1.46901 * 109.47007 * 275.02158 * 5 4 3 7 7 C 1.46906 * 111.00178 * 180.02562 * 6 5 4 8 8 H 1.08997 * 110.63512 * 36.68923 * 7 6 5 9 9 C 1.55157 * 110.71914 * 160.02545 * 7 6 5 10 10 C 1.54906 * 101.58059 * 153.86745 * 9 7 6 11 11 H 1.08996 * 110.46196 * 81.87447 * 10 9 7 12 12 C 1.53000 * 110.36799 * 204.14957 * 10 9 7 13 13 N 1.47420 * 104.83361 * 322.98823 * 10 9 7 14 14 C 1.34774 * 125.65554 * 204.16554 * 13 10 9 15 15 O 1.21286 * 119.99468 * 359.97438 * 14 13 10 16 16 C 1.50698 * 120.00606 * 179.97438 * 14 13 10 17 17 S 1.81004 * 109.47327 * 179.97438 * 16 14 13 18 18 C 1.76195 * 100.00097 * 180.02562 * 17 16 14 19 19 H 1.08001 * 120.00085 * 0.02562 * 18 17 16 20 20 C 1.38795 * 120.00190 * 180.02562 * 18 17 16 21 21 N 1.31630 * 120.00508 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99848 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.47083 * 89.99933 * 22 20 18 24 24 H 1.48502 * 109.47324 * 209.99764 * 22 20 18 25 25 H 1.48500 * 109.47015 * 330.00053 * 22 20 18 26 26 C 1.47026 * 108.70357 * 24.13043 * 13 10 9 27 27 C 1.34334 * 107.66149 * 0.02562 * 4 3 2 28 28 O 1.33971 * 125.62169 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.46901 * 90.00148 * 1 2 3 30 30 H 1.09003 * 109.47439 * 210.00209 * 1 2 3 31 31 H 1.09002 * 109.47507 * 330.00393 * 1 2 3 32 32 H 1.08995 * 109.47592 * 35.02563 * 5 4 3 33 33 H 1.08997 * 109.47293 * 155.02658 * 5 4 3 34 34 H 1.00901 * 111.00087 * 303.95721 * 6 5 4 35 35 H 1.09000 * 111.00355 * 271.93810 * 9 7 6 36 36 H 1.08998 * 111.00460 * 35.79081 * 9 7 6 37 37 H 1.08995 * 109.47340 * 176.86066 * 12 10 9 38 38 H 1.09003 * 109.47322 * 296.86614 * 12 10 9 39 39 H 1.09002 * 109.46640 * 56.86094 * 12 10 9 40 40 H 1.08995 * 109.47239 * 299.99928 * 16 14 13 41 41 H 1.09003 * 109.46817 * 60.00436 * 16 14 13 42 42 H 0.96993 * 120.00652 * 179.97438 * 21 20 18 43 43 H 1.09002 * 109.88627 * 239.52543 * 26 13 10 44 44 H 1.08994 * 110.01362 * 118.43049 * 26 13 10 45 45 H 1.08002 * 126.43385 * 180.02562 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2655 1.0589 0.0000 4 6 3.5522 0.6676 -0.0006 5 6 4.7570 1.5727 -0.0063 6 7 5.0733 1.9581 -1.3881 7 6 6.2456 2.8423 -1.4329 8 1 6.9784 2.5469 -0.6821 9 6 6.8768 2.8457 -2.8503 10 6 7.5632 4.2341 -2.8817 11 1 8.5300 4.1926 -2.3802 12 6 7.7334 4.7114 -4.3253 13 7 6.6443 5.1260 -2.1514 14 6 6.5659 6.4635 -2.2976 15 8 7.2929 7.0309 -3.0853 16 6 5.5750 7.2539 -1.4826 17 16 5.7121 9.0092 -1.9025 18 6 4.4792 9.6765 -0.8352 19 1 3.9142 9.0224 -0.1875 20 6 4.2340 11.0426 -0.8268 21 7 3.3133 11.5411 -0.0291 22 14 5.2107 12.1737 -1.9475 23 1 4.5088 12.3072 -3.2494 24 1 5.3364 13.5107 -1.3136 25 1 6.5631 11.6024 -2.1706 26 6 5.8267 4.3147 -1.2375 27 6 3.5697 -0.6756 -0.0015 28 8 2.2872 -1.0890 -0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 4.5430 2.4662 0.5802 33 1 5.6077 1.0480 0.4283 34 1 5.2124 1.1440 -1.9678 35 1 7.6094 2.0453 -2.9536 36 1 6.1087 2.7721 -3.6202 37 1 8.1660 5.7118 -4.3286 38 1 8.3942 4.0280 -4.8585 39 1 6.7610 4.7344 -4.8173 40 1 4.5654 6.9057 -1.7004 41 1 5.7857 7.1170 -0.4219 42 1 3.1422 12.4958 -0.0229 43 1 4.7706 4.4349 -1.4791 44 1 6.0077 4.6179 -0.2063 45 1 4.4469 -1.3057 -0.0017 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700829430.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:10 Heat of formation + Delta-G solvation = -4.033285 kcal Electronic energy + Delta-G solvation = -26368.648239 eV Core-core repulsion = 22514.316428 eV Total energy + Delta-G solvation = -3854.331811 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.65574 -40.15970 -37.87665 -36.06746 -34.62350 -32.62091 -32.39253 -32.21869 -30.16300 -28.77749 -27.97830 -25.87178 -25.62494 -25.53855 -22.25032 -21.92522 -21.32348 -21.00824 -18.97179 -17.61845 -17.46803 -17.13657 -16.99778 -16.47810 -15.68815 -15.16335 -15.02776 -14.98637 -14.85607 -14.44478 -14.21099 -14.05973 -13.52292 -13.49417 -13.32927 -13.10150 -12.84638 -12.79401 -12.69456 -12.52358 -12.17745 -11.95025 -11.85732 -11.56230 -11.33355 -11.21116 -11.13933 -10.96760 -10.92113 -10.76642 -10.54086 -9.80924 -9.25385 -9.16213 -8.95752 -8.85248 -8.49456 -8.44432 -6.86466 -6.24089 -3.95323 1.08341 2.27109 2.40994 2.74159 3.01892 3.22125 3.36829 3.54019 3.57576 3.64524 3.86165 4.16082 4.33841 4.37697 4.44903 4.47759 4.77637 4.78537 4.85187 4.96554 4.98904 5.02484 5.13208 5.14851 5.17452 5.21962 5.32964 5.43834 5.45348 5.54721 5.57273 5.60005 5.65272 5.72447 5.77799 5.87735 5.94458 6.10125 6.12661 6.30206 6.58475 6.63960 6.91037 7.45523 7.67224 7.99165 8.47435 8.52950 9.22103 10.85261 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011082 B = 0.002530 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2526.037173 B =11066.400452 C =13217.413554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.190 3.810 3 N -0.463 5.463 4 C -0.004 4.004 5 C 0.138 3.862 6 N -0.671 5.671 7 C 0.076 3.924 8 H 0.064 0.936 9 C -0.130 4.130 10 C 0.140 3.860 11 H 0.073 0.927 12 C -0.166 4.166 13 N -0.620 5.620 14 C 0.551 3.449 15 O -0.516 6.516 16 C -0.118 4.118 17 S -0.143 6.143 18 C -0.519 4.519 19 H 0.088 0.912 20 C 0.095 3.905 21 N -0.881 5.881 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.275 1.275 25 H -0.235 1.235 26 C 0.109 3.891 27 C -0.077 4.077 28 O -0.205 6.205 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.103 0.897 32 H 0.095 0.905 33 H 0.051 0.949 34 H 0.345 0.655 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.270 0.730 43 H 0.084 0.916 44 H 0.067 0.933 45 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.082 -30.295 -0.585 30.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.018 4.018 3 N -0.193 5.193 4 C -0.124 4.124 5 C 0.009 3.991 6 N -0.303 5.303 7 C -0.034 4.034 8 H 0.082 0.918 9 C -0.168 4.168 10 C 0.036 3.964 11 H 0.090 0.910 12 C -0.223 4.223 13 N -0.358 5.358 14 C 0.339 3.661 15 O -0.391 6.391 16 C -0.268 4.268 17 S 0.083 5.917 18 C -0.667 4.667 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.518 5.518 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.200 1.200 25 H -0.159 1.159 26 C -0.015 4.015 27 C -0.148 4.148 28 O -0.092 6.092 29 H 0.112 0.888 30 H 0.106 0.894 31 H 0.121 0.879 32 H 0.113 0.887 33 H 0.069 0.931 34 H 0.164 0.836 35 H 0.099 0.901 36 H 0.106 0.894 37 H 0.109 0.891 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.114 0.886 41 H 0.113 0.887 42 H 0.080 0.920 43 H 0.102 0.898 44 H 0.085 0.915 45 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 2.344 -28.097 -1.688 28.245 hybrid contribution 0.322 -1.457 0.895 1.740 sum 2.666 -29.554 -0.794 29.684 Atomic orbital electron populations 1.20280 0.81240 1.05190 1.04849 1.26432 0.96656 0.78511 1.00166 1.70416 1.01526 1.29920 1.17454 1.21586 0.93324 0.92143 1.05368 1.20222 0.90651 0.97540 0.90699 1.60301 1.38669 1.21775 1.09577 1.22512 0.90392 0.92983 0.97484 0.91824 1.23053 1.00280 0.96916 0.96557 1.21764 0.92803 0.87936 0.93905 0.90951 1.22179 1.02362 1.03881 0.93916 1.48468 1.39315 1.05737 1.42255 1.19914 0.83672 0.79854 0.82630 1.90634 1.43344 1.68525 1.36586 1.23269 1.00779 1.00399 1.02374 1.84724 1.52552 0.97018 1.57379 1.22317 1.21929 0.96263 1.26142 0.89390 1.24710 0.94446 0.97227 0.94945 1.69939 1.31173 1.13629 1.37063 0.86736 0.83025 0.80861 0.81229 1.19223 1.19999 1.15921 1.22006 0.96771 0.89133 0.93612 1.24751 0.85121 0.96095 1.08834 1.84440 1.16835 1.37952 1.69944 0.88815 0.89431 0.87882 0.88690 0.93149 0.83586 0.90076 0.89377 0.89063 0.92483 0.92531 0.88560 0.88696 0.91986 0.89776 0.91513 0.77104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.30 10.51 36.00 0.38 0.08 16 2 C 0.19 1.75 8.34 -12.95 -0.11 1.64 16 3 N -0.46 -5.39 11.29 -7.36 -0.08 -5.47 16 4 C 0.00 -0.04 6.62 -82.81 -0.55 -0.58 16 5 C 0.14 1.09 6.08 -4.98 -0.03 1.06 16 6 N -0.67 -5.48 6.28 -106.06 -0.67 -6.15 16 7 C 0.08 0.64 3.24 -65.87 -0.21 0.42 16 8 H 0.06 0.45 7.89 -51.93 -0.41 0.04 16 9 C -0.13 -1.06 5.94 -24.58 -0.15 -1.21 16 10 C 0.14 1.62 3.77 -66.42 -0.25 1.37 16 11 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 12 C -0.17 -2.09 8.71 37.16 0.32 -1.76 16 13 N -0.62 -8.95 3.24 -163.06 -0.53 -9.48 16 14 C 0.55 10.44 7.65 -10.99 -0.08 10.35 16 15 O -0.52 -11.27 13.52 5.55 0.08 -11.20 16 16 C -0.12 -2.43 5.35 36.00 0.19 -2.24 16 17 S -0.14 -3.74 18.55 -107.50 -1.99 -5.73 16 18 C -0.52 -15.31 10.04 30.94 0.31 -15.00 16 19 H 0.09 2.72 8.03 -52.49 -0.42 2.30 16 20 C 0.10 2.84 5.50 -17.43 -0.10 2.74 16 21 N -0.88 -27.08 13.97 55.49 0.78 -26.30 16 22 Si 0.86 22.19 27.74 -169.99 -4.72 17.48 16 23 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.24 -6.08 6.74 56.52 0.38 -5.70 16 26 C 0.11 1.28 6.17 -3.06 -0.02 1.26 16 27 C -0.08 -0.56 12.08 29.35 0.35 -0.20 16 28 O -0.20 -1.80 10.78 5.37 0.06 -1.75 16 29 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.09 0.89 8.13 -51.93 -0.42 0.46 16 33 H 0.05 0.27 8.08 -51.93 -0.42 -0.15 16 34 H 0.35 2.29 8.49 -39.29 -0.33 1.96 16 35 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.09 0.79 8.06 -51.93 -0.42 0.37 16 37 H 0.09 1.45 5.89 -51.93 -0.31 1.14 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.10 1.92 8.14 -51.92 -0.42 1.50 16 41 H 0.09 1.85 8.14 -51.91 -0.42 1.43 16 42 H 0.27 7.70 8.31 -40.82 -0.34 7.37 16 43 H 0.08 1.11 8.03 -51.93 -0.42 0.70 16 44 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.21 0.68 8.06 -52.49 -0.42 0.25 16 LS Contribution 386.70 15.07 5.83 5.83 Total: -1.00 -36.78 386.70 -8.14 -44.92 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -6.95 Total: -0.07 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: 0.06 Total: -2.08 kcal Atomic # 7 Polarization: -46.90 SS G_CDS: -0.50 Total: -47.40 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: 0.13 Total: -12.95 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.72 Total: 17.48 kcal Atomic # 16 Polarization: -3.74 SS G_CDS: -1.99 Total: -5.73 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.78 -8.14 -44.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700829430.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.890 kcal (2) G-P(sol) polarization free energy of solvation -36.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds