Wall clock time and date at job start Tue Mar 31 2020 22:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30258 * 125.61849 * 2 1 4 4 C 1.34485 * 108.70349 * 180.02562 * 3 2 1 5 5 C 1.50690 * 126.16685 * 179.73948 * 4 3 2 6 6 N 1.46901 * 109.47007 * 275.02158 * 5 4 3 7 7 C 1.46906 * 111.00178 * 180.02562 * 6 5 4 8 8 H 1.08997 * 110.63512 * 36.68923 * 7 6 5 9 9 C 1.55157 * 110.71914 * 160.02545 * 7 6 5 10 10 C 1.54906 * 101.58059 * 153.86745 * 9 7 6 11 11 H 1.08996 * 110.46196 * 81.87447 * 10 9 7 12 12 C 1.53000 * 110.36799 * 204.14957 * 10 9 7 13 13 N 1.47420 * 104.83361 * 322.98823 * 10 9 7 14 14 C 1.34774 * 125.65554 * 204.16554 * 13 10 9 15 15 O 1.21286 * 119.99468 * 359.97438 * 14 13 10 16 16 C 1.50698 * 120.00606 * 179.97438 * 14 13 10 17 17 S 1.81004 * 109.47327 * 179.97438 * 16 14 13 18 18 C 1.76195 * 100.00097 * 180.02562 * 17 16 14 19 19 H 1.08001 * 120.00085 * 0.02562 * 18 17 16 20 20 C 1.38795 * 120.00190 * 180.02562 * 18 17 16 21 21 N 1.31630 * 120.00508 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99848 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.47083 * 89.99933 * 22 20 18 24 24 H 1.48502 * 109.47324 * 209.99764 * 22 20 18 25 25 H 1.48500 * 109.47015 * 330.00053 * 22 20 18 26 26 C 1.47026 * 108.70357 * 24.13043 * 13 10 9 27 27 C 1.34334 * 107.66149 * 0.02562 * 4 3 2 28 28 O 1.33971 * 125.62169 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.46901 * 90.00148 * 1 2 3 30 30 H 1.09003 * 109.47439 * 210.00209 * 1 2 3 31 31 H 1.09002 * 109.47507 * 330.00393 * 1 2 3 32 32 H 1.08995 * 109.47592 * 35.02563 * 5 4 3 33 33 H 1.08997 * 109.47293 * 155.02658 * 5 4 3 34 34 H 1.00901 * 111.00087 * 303.95721 * 6 5 4 35 35 H 1.09000 * 111.00355 * 271.93810 * 9 7 6 36 36 H 1.08998 * 111.00460 * 35.79081 * 9 7 6 37 37 H 1.08995 * 109.47340 * 176.86066 * 12 10 9 38 38 H 1.09003 * 109.47322 * 296.86614 * 12 10 9 39 39 H 1.09002 * 109.46640 * 56.86094 * 12 10 9 40 40 H 1.08995 * 109.47239 * 299.99928 * 16 14 13 41 41 H 1.09003 * 109.46817 * 60.00436 * 16 14 13 42 42 H 0.96993 * 120.00652 * 179.97438 * 21 20 18 43 43 H 1.09002 * 109.88627 * 239.52543 * 26 13 10 44 44 H 1.08994 * 110.01362 * 118.43049 * 26 13 10 45 45 H 1.08002 * 126.43385 * 180.02562 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2655 1.0589 0.0000 4 6 3.5522 0.6676 -0.0006 5 6 4.7570 1.5727 -0.0063 6 7 5.0733 1.9581 -1.3881 7 6 6.2456 2.8423 -1.4329 8 1 6.9784 2.5469 -0.6821 9 6 6.8768 2.8457 -2.8503 10 6 7.5632 4.2341 -2.8817 11 1 8.5300 4.1926 -2.3802 12 6 7.7334 4.7114 -4.3253 13 7 6.6443 5.1260 -2.1514 14 6 6.5659 6.4635 -2.2976 15 8 7.2929 7.0309 -3.0853 16 6 5.5750 7.2539 -1.4826 17 16 5.7121 9.0092 -1.9025 18 6 4.4792 9.6765 -0.8352 19 1 3.9142 9.0224 -0.1875 20 6 4.2340 11.0426 -0.8268 21 7 3.3133 11.5411 -0.0291 22 14 5.2107 12.1737 -1.9475 23 1 4.5088 12.3072 -3.2494 24 1 5.3364 13.5107 -1.3136 25 1 6.5631 11.6024 -2.1706 26 6 5.8267 4.3147 -1.2375 27 6 3.5697 -0.6756 -0.0015 28 8 2.2872 -1.0890 -0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 4.5430 2.4662 0.5802 33 1 5.6077 1.0480 0.4283 34 1 5.2124 1.1440 -1.9678 35 1 7.6094 2.0453 -2.9536 36 1 6.1087 2.7721 -3.6202 37 1 8.1660 5.7118 -4.3286 38 1 8.3942 4.0280 -4.8585 39 1 6.7610 4.7344 -4.8173 40 1 4.5654 6.9057 -1.7004 41 1 5.7857 7.1170 -0.4219 42 1 3.1422 12.4958 -0.0229 43 1 4.7706 4.4349 -1.4791 44 1 6.0077 4.6179 -0.2063 45 1 4.4469 -1.3057 -0.0017 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700829430.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:10 Heat of formation + Delta-G solvation = -33.143372 kcal Electronic energy + Delta-G solvation = -26369.910547 eV Core-core repulsion = 22514.316428 eV Total energy + Delta-G solvation = -3855.594119 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.26595 -41.32074 -39.00020 -36.87312 -35.35575 -34.69665 -33.46183 -33.14485 -30.94613 -30.25941 -28.58294 -27.88051 -26.81157 -26.25037 -23.32040 -22.58111 -21.96679 -21.76197 -20.43948 -19.44506 -18.19080 -18.08101 -17.75660 -17.59919 -17.14215 -16.56777 -16.42503 -16.05282 -15.78227 -15.52048 -15.19108 -14.95458 -14.79491 -14.69484 -14.45118 -14.06069 -13.87328 -13.75628 -13.49821 -13.40629 -13.30478 -13.22337 -13.04353 -12.96570 -12.82714 -12.63327 -12.29537 -12.07685 -11.97053 -11.87514 -11.74054 -11.44044 -11.18991 -10.68901 -10.57907 -9.75257 -9.70422 -9.44061 -9.03022 -8.53329 -6.25041 0.51051 0.94094 1.30230 1.43562 1.51326 1.52176 1.63000 1.89539 2.04215 2.23751 2.64840 2.84461 3.03643 3.19950 3.41406 3.49816 3.81996 3.86701 3.99505 4.07421 4.12782 4.19930 4.34269 4.37125 4.41253 4.45343 4.51610 4.62869 4.65251 4.70690 4.72349 4.78438 4.84828 4.89174 4.96681 5.00800 5.10771 5.22033 5.25787 5.36998 5.57883 5.68754 5.96443 6.08954 6.35193 6.42480 6.84646 6.91060 7.08875 8.59518 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011082 B = 0.002530 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2526.037173 B =11066.400452 C =13217.413554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.179 3.821 3 N -0.512 5.512 4 C -0.033 4.033 5 C 0.143 3.857 6 N -0.683 5.683 7 C 0.091 3.909 8 H 0.090 0.910 9 C -0.113 4.113 10 C 0.130 3.870 11 H 0.088 0.912 12 C -0.161 4.161 13 N -0.611 5.611 14 C 0.549 3.451 15 O -0.551 6.551 16 C -0.105 4.105 17 S -0.167 6.167 18 C -0.531 4.531 19 H 0.058 0.942 20 C 0.045 3.955 21 N -0.917 5.917 22 Si 0.917 3.083 23 H -0.262 1.262 24 H -0.256 1.256 25 H -0.236 1.236 26 C 0.100 3.900 27 C -0.061 4.061 28 O -0.212 6.212 29 H 0.104 0.896 30 H 0.109 0.891 31 H 0.100 0.900 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.358 0.642 35 H 0.121 0.879 36 H 0.080 0.920 37 H 0.055 0.945 38 H 0.089 0.911 39 H 0.041 0.959 40 H 0.099 0.901 41 H 0.105 0.895 42 H 0.278 0.722 43 H 0.064 0.936 44 H 0.071 0.929 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.697 -33.278 -1.061 33.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.028 4.028 3 N -0.243 5.243 4 C -0.153 4.153 5 C 0.014 3.986 6 N -0.317 5.317 7 C -0.019 4.019 8 H 0.108 0.892 9 C -0.152 4.152 10 C 0.028 3.972 11 H 0.106 0.894 12 C -0.219 4.219 13 N -0.347 5.347 14 C 0.337 3.663 15 O -0.430 6.430 16 C -0.255 4.255 17 S 0.060 5.940 18 C -0.679 4.679 19 H 0.076 0.924 20 C -0.160 4.160 21 N -0.555 5.555 22 Si 0.738 3.262 23 H -0.186 1.186 24 H -0.180 1.180 25 H -0.160 1.160 26 C -0.024 4.024 27 C -0.132 4.132 28 O -0.099 6.099 29 H 0.122 0.878 30 H 0.127 0.873 31 H 0.119 0.881 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.179 0.821 35 H 0.139 0.861 36 H 0.099 0.901 37 H 0.074 0.926 38 H 0.108 0.892 39 H 0.060 0.940 40 H 0.117 0.883 41 H 0.123 0.877 42 H 0.087 0.913 43 H 0.083 0.917 44 H 0.089 0.911 45 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 3.949 -31.140 -2.150 31.463 hybrid contribution -0.238 -0.705 1.094 1.323 sum 3.711 -31.845 -1.056 32.078 Atomic orbital electron populations 1.20453 0.79148 1.06122 1.05785 1.27085 0.97879 0.78247 0.99589 1.70390 1.03168 1.31578 1.19160 1.21901 0.93007 0.93411 1.06965 1.20196 0.91294 0.96782 0.90295 1.60138 1.38783 1.22556 1.10239 1.22393 0.90789 0.90367 0.98356 0.89237 1.23005 1.00614 0.95512 0.96023 1.22122 0.93242 0.88939 0.92904 0.89446 1.22096 1.01942 1.02763 0.95090 1.48439 1.39448 1.04569 1.42204 1.19495 0.83118 0.81440 0.82239 1.90631 1.44624 1.69737 1.37981 1.23222 1.01992 0.96850 1.03472 1.84563 1.51211 1.01459 1.56779 1.22442 1.22618 0.96459 1.26339 0.92414 1.25594 0.95394 0.98690 0.96322 1.70017 1.32507 1.14536 1.38449 0.85842 0.81426 0.79445 0.79487 1.18617 1.18021 1.15989 1.22246 0.95397 0.91600 0.93137 1.25487 0.85518 0.95884 1.06300 1.84459 1.17564 1.37938 1.69921 0.87771 0.87263 0.88137 0.91016 0.89928 0.82140 0.86115 0.90111 0.92636 0.89207 0.93973 0.88278 0.87702 0.91266 0.91735 0.91106 0.73074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.56 10.51 71.23 0.75 0.19 16 2 C 0.18 3.21 8.34 88.34 0.74 3.94 16 3 N -0.51 -11.89 11.29 -291.98 -3.30 -15.19 16 4 C -0.03 -0.58 6.62 41.26 0.27 -0.31 16 5 C 0.14 1.97 6.08 85.55 0.52 2.49 16 6 N -0.68 -9.45 6.28 -489.46 -3.07 -12.52 16 7 C 0.09 1.23 3.24 46.10 0.15 1.38 16 8 H 0.09 0.84 7.89 -2.39 -0.02 0.82 16 9 C -0.11 -1.42 5.94 31.99 0.19 -1.23 16 10 C 0.13 2.70 3.77 45.47 0.17 2.87 16 11 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 12 C -0.16 -3.85 8.71 71.98 0.63 -3.22 16 13 N -0.61 -17.10 3.24 -788.17 -2.56 -19.66 16 14 C 0.55 20.99 7.65 87.66 0.67 21.66 16 15 O -0.55 -24.50 13.52 -3.05 -0.04 -24.54 16 16 C -0.10 -4.42 5.35 71.24 0.38 -4.04 16 17 S -0.17 -8.87 18.55 -56.49 -1.05 -9.91 16 18 C -0.53 -32.29 10.04 67.95 0.68 -31.61 16 19 H 0.06 3.73 8.03 -2.91 -0.02 3.71 16 20 C 0.05 2.75 5.50 84.86 0.47 3.21 16 21 N -0.92 -57.38 13.97 21.65 0.30 -57.07 16 22 Si 0.92 46.19 27.74 68.60 1.90 48.09 16 23 H -0.26 -12.85 7.11 99.48 0.71 -12.14 16 24 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 25 H -0.24 -11.86 6.74 99.48 0.67 -11.19 16 26 C 0.10 2.23 6.17 86.73 0.54 2.77 16 27 C -0.06 -0.73 12.08 66.93 0.81 0.07 16 28 O -0.21 -3.39 10.78 -3.70 -0.04 -3.43 16 29 H 0.10 0.76 8.14 -2.39 -0.02 0.75 16 30 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.07 1.30 8.13 -2.39 -0.02 1.29 16 33 H 0.08 0.58 8.08 -2.39 -0.02 0.56 16 34 H 0.36 3.52 8.49 -89.69 -0.76 2.76 16 35 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.08 1.20 8.06 -2.39 -0.02 1.18 16 37 H 0.05 1.76 5.89 -2.39 -0.01 1.75 16 38 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.10 4.09 8.14 -2.40 -0.02 4.07 16 41 H 0.10 4.18 8.14 -2.39 -0.02 4.16 16 42 H 0.28 15.99 8.31 -92.71 -0.77 15.22 16 43 H 0.06 1.72 8.03 -2.39 -0.02 1.70 16 44 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.25 0.52 8.06 -2.91 -0.02 0.49 16 Total: -1.00 -83.68 386.70 -0.69 -84.37 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: 0.20 Total: 11.68 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: 6.96 Total: -1.82 kcal Atomic # 7 Polarization: -95.81 SS G_CDS: -8.63 Total: -104.44 kcal Atomic # 8 Polarization: -27.89 SS G_CDS: -0.08 Total: -27.97 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 1.90 Total: 48.09 kcal Atomic # 16 Polarization: -8.87 SS G_CDS: -1.05 Total: -9.91 kcal Total: -83.68 -0.69 -84.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700829430.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.231 kcal (2) G-P(sol) polarization free energy of solvation -83.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds