Wall clock time and date at job start Tue Mar 31 2020 23:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50696 * 109.46929 * 2 1 4 4 N 1.34666 * 125.80614 * 265.02442 * 3 2 1 5 5 H 0.96993 * 124.84319 * 0.02562 * 4 3 2 6 6 C 1.36445 * 110.29878 * 180.02562 * 4 3 2 7 7 C 1.34484 * 108.86000 * 0.02562 * 6 4 3 8 8 C 1.36772 * 125.80184 * 84.71843 * 3 2 1 9 9 C 1.47260 * 126.93971 * 359.96608 * 8 3 2 10 10 O 1.21632 * 119.99642 * 321.16982 * 9 8 3 11 11 N 1.34774 * 120.00561 * 141.17756 * 9 8 3 12 12 C 1.46502 * 119.99651 * 5.17816 * 11 9 8 13 13 C 1.46495 * 120.00611 * 185.18227 * 11 9 8 14 14 C 1.52998 * 109.47184 * 89.99448 * 13 11 9 15 15 N 1.46506 * 109.47116 * 180.02562 * 14 13 11 16 16 C 1.34770 * 120.00196 * 180.02562 * 15 14 13 17 17 O 1.21287 * 119.99940 * 359.97438 * 16 15 14 18 18 C 1.50701 * 120.00331 * 180.02562 * 16 15 14 19 19 S 1.80995 * 109.47227 * 179.97438 * 18 16 15 20 20 C 1.76202 * 99.99751 * 180.02562 * 19 18 16 21 21 H 1.07994 * 120.00222 * 359.97438 * 20 19 18 22 22 C 1.38800 * 119.99837 * 179.97438 * 20 19 18 23 23 N 1.31634 * 120.00095 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00170 * 179.97438 * 22 20 19 25 25 H 1.48491 * 109.47116 * 59.99527 * 24 22 20 26 26 H 1.48496 * 109.47135 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.46580 * 299.99665 * 24 22 20 28 28 H 1.09004 * 109.47531 * 299.99791 * 1 2 3 29 29 H 1.09003 * 109.47439 * 59.99809 * 1 2 3 30 30 H 1.09001 * 109.47566 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47082 * 120.00197 * 2 1 3 32 32 H 1.09001 * 109.47029 * 240.00158 * 2 1 3 33 33 H 1.08004 * 125.56638 * 179.97438 * 6 4 3 34 34 H 1.07995 * 126.83562 * 179.97438 * 7 6 4 35 35 H 1.08998 * 109.47089 * 84.56409 * 12 11 9 36 36 H 1.09004 * 109.47355 * 204.56680 * 12 11 9 37 37 H 1.08999 * 109.47458 * 324.56448 * 12 11 9 38 38 H 1.08997 * 109.47149 * 210.00030 * 13 11 9 39 39 H 1.09002 * 109.46833 * 329.99383 * 13 11 9 40 40 H 1.08997 * 109.47553 * 300.00334 * 14 13 11 41 41 H 1.09002 * 109.46933 * 60.00624 * 14 13 11 42 42 H 0.97006 * 119.99400 * 359.97438 * 15 14 13 43 43 H 1.08997 * 109.46823 * 299.99918 * 18 16 15 44 44 H 1.09002 * 109.47092 * 59.99230 * 18 16 15 45 45 H 0.97001 * 120.00372 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.3841 2.1320 -1.0880 5 1 2.3515 1.8027 -1.9997 6 6 2.7931 3.3820 -0.7246 7 6 2.7104 3.4946 0.6130 8 6 2.2026 2.2092 1.1046 9 6 1.9343 1.8406 2.5048 10 8 0.9632 1.1617 2.7796 11 7 2.7646 2.2557 3.4820 12 6 3.8685 3.1660 3.1675 13 6 2.5634 1.7965 4.8585 14 6 3.3537 0.5065 5.0864 15 7 3.1520 0.0469 6.4629 16 6 3.7559 -1.0785 6.8929 17 8 4.4661 -1.7112 6.1403 18 6 3.5480 -1.5516 8.3086 19 16 4.4831 -3.0776 8.5783 20 6 4.0696 -3.3963 10.2612 21 1 3.4138 -2.7229 10.7930 22 6 4.5866 -4.5129 10.9034 23 7 5.3855 -5.3340 10.2550 24 14 4.1488 -4.8506 12.6877 25 1 2.6782 -5.0127 12.8144 26 1 4.8240 -6.0948 13.1361 27 1 4.5959 -3.7128 13.5307 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 3.1291 4.1544 -1.4006 34 1 2.9628 4.3607 1.2066 35 1 3.5051 4.1936 3.1741 36 1 4.6555 3.0542 3.9134 37 1 4.2664 2.9277 2.1811 38 1 2.9106 2.5627 5.5515 39 1 1.5032 1.6077 5.0271 40 1 3.0065 -0.2598 4.3934 41 1 4.4139 0.6953 4.9178 42 1 2.5843 0.5532 7.0649 43 1 3.8943 -0.7854 9.0022 44 1 2.4877 -1.7410 8.4763 45 1 5.7472 -6.1142 10.7039 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001704182531.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:17 Heat of formation + Delta-G solvation = -29.982201 kcal Electronic energy + Delta-G solvation = -26091.012864 eV Core-core repulsion = 22235.555823 eV Total energy + Delta-G solvation = -3855.457040 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.68001 -39.65729 -38.90800 -36.11825 -34.39785 -33.84052 -32.39490 -31.71019 -30.21788 -28.71250 -28.25004 -26.68222 -25.45707 -24.20853 -23.26097 -21.57508 -21.13399 -20.33921 -18.71100 -17.98081 -17.79503 -16.58020 -16.47065 -16.24245 -15.69769 -15.27450 -15.18338 -14.77355 -14.65241 -14.56904 -14.11679 -14.03522 -13.82607 -13.62834 -13.45941 -13.15663 -13.06679 -12.61406 -12.52808 -12.40899 -12.28889 -12.15810 -12.00121 -11.64889 -11.30524 -11.21809 -11.01247 -11.00918 -10.74441 -10.04626 -9.79545 -9.39211 -9.13436 -9.03102 -8.90691 -8.83794 -8.51201 -8.19992 -6.46225 -6.18182 -3.88581 1.56954 2.09710 2.54048 2.89136 3.12322 3.15964 3.19296 3.26191 3.30585 3.39007 3.85881 4.23821 4.37899 4.45785 4.67559 4.76682 4.79296 4.91968 4.95171 5.06841 5.09206 5.16686 5.20948 5.24954 5.28604 5.36021 5.46952 5.52350 5.53916 5.67528 5.70133 5.78934 5.85354 5.93793 5.95087 6.10414 6.18627 6.28307 6.41221 6.59524 6.67035 7.06050 7.21157 7.62592 7.75091 8.09897 8.38439 8.66807 9.26838 10.89175 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023910 B = 0.001837 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.797578 B =15238.976760 C =15697.280040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.060 4.060 3 C 0.103 3.897 4 N -0.552 5.552 5 H 0.416 0.584 6 C -0.017 4.017 7 C -0.169 4.169 8 C -0.229 4.229 9 C 0.592 3.408 10 O -0.536 6.536 11 N -0.610 5.610 12 C 0.078 3.922 13 C 0.107 3.893 14 C 0.108 3.892 15 N -0.736 5.736 16 C 0.533 3.467 17 O -0.517 6.517 18 C -0.153 4.153 19 S -0.061 6.061 20 C -0.535 4.535 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.076 0.924 29 H 0.046 0.954 30 H 0.061 0.939 31 H 0.091 0.909 32 H 0.069 0.931 33 H 0.169 0.831 34 H 0.147 0.853 35 H 0.055 0.945 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.092 0.908 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.398 0.602 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.579 22.141 -23.251 32.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.098 4.098 3 C -0.014 4.014 4 N -0.147 5.147 5 H 0.252 0.748 6 C -0.145 4.145 7 C -0.194 4.194 8 C -0.239 4.239 9 C 0.382 3.618 10 O -0.413 6.413 11 N -0.344 5.344 12 C -0.065 4.065 13 C -0.017 4.017 14 C -0.017 4.017 15 N -0.392 5.392 16 C 0.319 3.681 17 O -0.392 6.392 18 C -0.303 4.303 19 S 0.166 5.834 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.200 1.200 28 H 0.095 0.905 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.109 0.891 32 H 0.088 0.912 33 H 0.186 0.814 34 H 0.164 0.836 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.110 0.890 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.232 0.768 43 H 0.108 0.892 44 H 0.109 0.891 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.775 20.548 -24.499 32.493 hybrid contribution -1.161 0.854 1.831 2.330 sum -6.936 21.402 -22.669 31.938 Atomic orbital electron populations 1.21748 0.93551 1.02294 1.02788 1.20209 0.97171 0.88921 1.03542 1.20280 1.00527 0.94951 0.85663 1.41568 1.52313 1.12063 1.08756 0.74797 1.21737 1.08137 0.88068 0.96536 1.22114 1.06132 0.97481 0.93630 1.20010 1.15339 0.96566 0.91977 1.17486 0.81680 0.78549 0.84059 1.90781 1.28010 1.39100 1.83397 1.47482 1.30860 1.48287 1.07738 1.22003 0.89041 0.92618 1.02805 1.21559 1.02126 0.95572 0.82418 1.21571 1.00205 0.95912 0.84021 1.45842 1.52431 1.27692 1.13202 1.20298 0.78904 0.79512 0.89419 1.90704 1.37029 1.54754 1.56664 1.23526 1.06030 1.05967 0.94809 1.85399 1.61163 1.21562 1.15275 1.22833 1.35067 1.13335 0.97122 0.90954 1.24997 0.94620 0.95006 0.99004 1.70012 1.30106 1.13290 1.36925 0.86219 0.78713 0.77766 0.82771 1.19941 1.20840 1.19952 0.90453 0.93473 0.92032 0.89094 0.91240 0.81396 0.83553 0.92607 0.91042 0.90156 0.89887 0.88969 0.91381 0.91643 0.76793 0.89181 0.89134 0.92158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.87 37.16 0.37 -0.92 16 2 C -0.06 -0.52 5.82 -27.89 -0.16 -0.68 16 3 C 0.10 0.92 6.43 -81.88 -0.53 0.39 16 4 N -0.55 -3.23 5.90 -9.11 -0.05 -3.28 16 5 H 0.42 1.18 8.96 -40.82 -0.37 0.82 16 6 C -0.02 -0.10 11.89 -16.83 -0.20 -0.30 16 7 C -0.17 -1.24 8.79 -37.50 -0.33 -1.57 16 8 C -0.23 -2.32 5.43 -103.35 -0.56 -2.88 16 9 C 0.59 7.21 7.37 -12.59 -0.09 7.12 16 10 O -0.54 -8.12 14.69 5.25 0.08 -8.04 16 11 N -0.61 -6.08 2.87 -182.91 -0.53 -6.61 16 12 C 0.08 0.53 9.09 59.85 0.54 1.07 16 13 C 0.11 1.06 5.54 -4.05 -0.02 1.04 16 14 C 0.11 1.41 6.00 -4.04 -0.02 1.39 16 15 N -0.74 -10.37 5.56 -60.29 -0.33 -10.70 16 16 C 0.53 10.36 7.85 -10.99 -0.09 10.27 16 17 O -0.52 -12.26 15.86 5.55 0.09 -12.17 16 18 C -0.15 -3.15 6.16 36.01 0.22 -2.93 16 19 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 20 C -0.54 -15.45 9.50 30.94 0.29 -15.15 16 21 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 22 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 23 N -0.87 -26.48 13.22 55.49 0.73 -25.74 16 24 Si 0.92 21.63 29.55 -169.99 -5.02 16.61 16 25 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 27 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 28 H 0.08 0.88 6.78 -51.93 -0.35 0.53 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.09 0.97 7.97 -51.93 -0.41 0.55 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.17 0.40 8.06 -52.48 -0.42 -0.02 16 34 H 0.15 0.81 6.60 -52.49 -0.35 0.46 16 35 H 0.06 0.29 7.40 -51.93 -0.38 -0.10 16 36 H 0.07 0.43 8.03 -51.93 -0.42 0.01 16 37 H 0.08 0.54 5.91 -51.93 -0.31 0.24 16 38 H 0.08 0.61 8.07 -51.93 -0.42 0.20 16 39 H 0.09 1.00 7.36 -51.93 -0.38 0.62 16 40 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 41 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.40 4.26 8.47 -40.82 -0.35 3.91 16 43 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 44 H 0.09 1.73 8.14 -51.91 -0.42 1.31 16 45 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 391.48 15.07 5.90 5.90 Total: -1.00 -38.57 391.48 -8.69 -47.25 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -6.66 Total: 1.83 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: -0.67 Total: -1.15 kcal Atomic # 7 Polarization: -46.15 SS G_CDS: -0.18 Total: -46.33 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: 0.17 Total: -20.22 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -38.57 -8.69 -47.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704182531.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.271 kcal (2) G-P(sol) polarization free energy of solvation -38.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds