Wall clock time and date at job start Tue Mar 31 2020 23:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50696 * 109.46929 * 2 1 4 4 N 1.34666 * 125.80614 * 265.02442 * 3 2 1 5 5 H 0.96993 * 124.84319 * 0.02562 * 4 3 2 6 6 C 1.36445 * 110.29878 * 180.02562 * 4 3 2 7 7 C 1.34484 * 108.86000 * 0.02562 * 6 4 3 8 8 C 1.36772 * 125.80184 * 84.71843 * 3 2 1 9 9 C 1.47260 * 126.93971 * 359.96608 * 8 3 2 10 10 O 1.21632 * 119.99642 * 321.16982 * 9 8 3 11 11 N 1.34774 * 120.00561 * 141.17756 * 9 8 3 12 12 C 1.46502 * 119.99651 * 5.17816 * 11 9 8 13 13 C 1.46495 * 120.00611 * 185.18227 * 11 9 8 14 14 C 1.52998 * 109.47184 * 89.99448 * 13 11 9 15 15 N 1.46506 * 109.47116 * 180.02562 * 14 13 11 16 16 C 1.34770 * 120.00196 * 180.02562 * 15 14 13 17 17 O 1.21287 * 119.99940 * 359.97438 * 16 15 14 18 18 C 1.50701 * 120.00331 * 180.02562 * 16 15 14 19 19 S 1.80995 * 109.47227 * 179.97438 * 18 16 15 20 20 C 1.76202 * 99.99751 * 180.02562 * 19 18 16 21 21 H 1.07994 * 120.00222 * 359.97438 * 20 19 18 22 22 C 1.38800 * 119.99837 * 179.97438 * 20 19 18 23 23 N 1.31634 * 120.00095 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00170 * 179.97438 * 22 20 19 25 25 H 1.48491 * 109.47116 * 59.99527 * 24 22 20 26 26 H 1.48496 * 109.47135 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.46580 * 299.99665 * 24 22 20 28 28 H 1.09004 * 109.47531 * 299.99791 * 1 2 3 29 29 H 1.09003 * 109.47439 * 59.99809 * 1 2 3 30 30 H 1.09001 * 109.47566 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47082 * 120.00197 * 2 1 3 32 32 H 1.09001 * 109.47029 * 240.00158 * 2 1 3 33 33 H 1.08004 * 125.56638 * 179.97438 * 6 4 3 34 34 H 1.07995 * 126.83562 * 179.97438 * 7 6 4 35 35 H 1.08998 * 109.47089 * 84.56409 * 12 11 9 36 36 H 1.09004 * 109.47355 * 204.56680 * 12 11 9 37 37 H 1.08999 * 109.47458 * 324.56448 * 12 11 9 38 38 H 1.08997 * 109.47149 * 210.00030 * 13 11 9 39 39 H 1.09002 * 109.46833 * 329.99383 * 13 11 9 40 40 H 1.08997 * 109.47553 * 300.00334 * 14 13 11 41 41 H 1.09002 * 109.46933 * 60.00624 * 14 13 11 42 42 H 0.97006 * 119.99400 * 359.97438 * 15 14 13 43 43 H 1.08997 * 109.46823 * 299.99918 * 18 16 15 44 44 H 1.09002 * 109.47092 * 59.99230 * 18 16 15 45 45 H 0.97001 * 120.00372 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.3841 2.1320 -1.0880 5 1 2.3515 1.8027 -1.9997 6 6 2.7931 3.3820 -0.7246 7 6 2.7104 3.4946 0.6130 8 6 2.2026 2.2092 1.1046 9 6 1.9343 1.8406 2.5048 10 8 0.9632 1.1617 2.7796 11 7 2.7646 2.2557 3.4820 12 6 3.8685 3.1660 3.1675 13 6 2.5634 1.7965 4.8585 14 6 3.3537 0.5065 5.0864 15 7 3.1520 0.0469 6.4629 16 6 3.7559 -1.0785 6.8929 17 8 4.4661 -1.7112 6.1403 18 6 3.5480 -1.5516 8.3086 19 16 4.4831 -3.0776 8.5783 20 6 4.0696 -3.3963 10.2612 21 1 3.4138 -2.7229 10.7930 22 6 4.5866 -4.5129 10.9034 23 7 5.3855 -5.3340 10.2550 24 14 4.1488 -4.8506 12.6877 25 1 2.6782 -5.0127 12.8144 26 1 4.8240 -6.0948 13.1361 27 1 4.5959 -3.7128 13.5307 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 3.1291 4.1544 -1.4006 34 1 2.9628 4.3607 1.2066 35 1 3.5051 4.1936 3.1741 36 1 4.6555 3.0542 3.9134 37 1 4.2664 2.9277 2.1811 38 1 2.9106 2.5627 5.5515 39 1 1.5032 1.6077 5.0271 40 1 3.0065 -0.2598 4.3934 41 1 4.4139 0.6953 4.9178 42 1 2.5843 0.5532 7.0649 43 1 3.8943 -0.7854 9.0022 44 1 2.4877 -1.7410 8.4763 45 1 5.7472 -6.1142 10.7039 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001704182531.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:16 Heat of formation + Delta-G solvation = -58.316103 kcal Electronic energy + Delta-G solvation = -26092.241514 eV Core-core repulsion = 22235.555823 eV Total energy + Delta-G solvation = -3856.685691 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.25430 -40.77760 -40.15431 -37.11312 -35.61557 -34.57820 -34.52356 -32.52431 -31.44182 -29.57984 -29.16218 -27.68547 -27.37244 -25.10252 -24.05488 -22.36492 -21.86873 -21.59282 -19.88161 -19.42158 -18.54036 -17.90647 -17.53018 -17.29658 -16.87288 -16.78284 -16.57741 -16.18181 -15.72449 -15.27755 -15.24492 -15.14697 -14.70625 -14.69251 -14.53484 -14.28288 -14.10790 -13.79614 -13.58323 -13.25044 -13.16694 -13.11304 -13.03787 -12.88151 -12.85410 -12.61959 -12.37162 -12.30943 -11.92339 -11.75098 -11.12299 -11.10021 -10.89013 -10.28126 -10.19860 -9.75801 -9.65651 -9.08549 -8.66974 -8.33849 -6.12475 0.85345 1.24865 1.44759 1.45150 1.55065 1.58154 1.60085 1.83003 2.27870 2.34820 2.35346 2.58006 3.00009 3.32859 3.74165 3.80517 3.83651 4.01039 4.04817 4.11936 4.30401 4.33775 4.36817 4.39533 4.40426 4.50975 4.51148 4.66942 4.72226 4.76599 4.87351 4.92942 4.98367 5.01519 5.07597 5.23061 5.29578 5.35391 5.42310 5.58330 5.84424 6.03481 6.20382 6.41351 6.46452 6.69548 7.06995 7.20483 7.25356 8.75188 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023910 B = 0.001837 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.797578 B =15238.976760 C =15697.280040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.059 4.059 3 C 0.087 3.913 4 N -0.540 5.540 5 H 0.431 0.569 6 C -0.001 4.001 7 C -0.183 4.183 8 C -0.259 4.259 9 C 0.582 3.418 10 O -0.580 6.580 11 N -0.610 5.610 12 C 0.074 3.926 13 C 0.115 3.885 14 C 0.115 3.885 15 N -0.709 5.709 16 C 0.534 3.466 17 O -0.568 6.568 18 C -0.128 4.128 19 S -0.154 6.154 20 C -0.546 4.546 21 H 0.084 0.916 22 C 0.012 3.988 23 N -0.912 5.912 24 Si 1.000 3.000 25 H -0.263 1.263 26 H -0.279 1.279 27 H -0.260 1.260 28 H 0.045 0.955 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.094 0.906 33 H 0.207 0.793 34 H 0.163 0.837 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.120 0.880 39 H 0.082 0.918 40 H 0.035 0.965 41 H 0.065 0.935 42 H 0.419 0.581 43 H 0.116 0.884 44 H 0.110 0.890 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.996 25.098 -23.343 34.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.097 4.097 3 C -0.031 4.031 4 N -0.136 5.136 5 H 0.270 0.730 6 C -0.129 4.129 7 C -0.206 4.206 8 C -0.269 4.269 9 C 0.373 3.627 10 O -0.461 6.461 11 N -0.342 5.342 12 C -0.067 4.067 13 C -0.008 4.008 14 C -0.010 4.010 15 N -0.364 5.364 16 C 0.320 3.680 17 O -0.446 6.446 18 C -0.279 4.279 19 S 0.073 5.927 20 C -0.694 4.694 21 H 0.102 0.898 22 C -0.193 4.193 23 N -0.548 5.548 24 Si 0.822 3.178 25 H -0.187 1.187 26 H -0.204 1.204 27 H -0.185 1.185 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.113 0.887 33 H 0.224 0.776 34 H 0.181 0.819 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.138 0.862 39 H 0.100 0.900 40 H 0.053 0.947 41 H 0.083 0.917 42 H 0.257 0.743 43 H 0.134 0.866 44 H 0.128 0.872 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.203 23.583 -24.610 34.646 hybrid contribution -1.047 0.046 1.730 2.022 sum -7.250 23.629 -22.880 33.681 Atomic orbital electron populations 1.21670 0.93844 1.02265 1.02005 1.20134 0.96909 0.89409 1.03230 1.20254 1.01262 0.95076 0.86536 1.41584 1.51172 1.11956 1.08853 0.72981 1.22357 1.05865 0.88142 0.96562 1.22344 1.06753 0.96898 0.94628 1.20141 1.17072 0.98534 0.91200 1.17984 0.81381 0.77952 0.85375 1.90746 1.29975 1.41162 1.84185 1.47613 1.31154 1.48143 1.07291 1.22215 0.88320 0.92990 1.03192 1.21503 1.01035 0.94812 0.83490 1.21582 1.00621 0.96535 0.82292 1.45535 1.50945 1.25899 1.13974 1.20134 0.78839 0.80419 0.88653 1.90693 1.39589 1.56661 1.57646 1.23360 1.05697 1.02563 0.96273 1.85606 1.63716 1.26941 1.16417 1.23178 1.35289 1.13914 0.97024 0.89764 1.26163 0.94206 0.94563 1.04371 1.70185 1.31455 1.13959 1.39222 0.84979 0.78844 0.77945 0.76072 1.18734 1.20413 1.18495 0.93536 0.91755 0.91708 0.92136 0.88728 0.77596 0.81931 0.90327 0.89954 0.90145 0.86199 0.89973 0.94670 0.91678 0.74311 0.86620 0.87211 0.92000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.87 71.98 0.71 -1.88 16 2 C -0.06 -1.05 5.82 29.85 0.17 -0.88 16 3 C 0.09 1.52 6.43 41.78 0.27 1.79 16 4 N -0.54 -5.16 5.90 -182.72 -1.08 -6.24 16 5 H 0.43 1.33 8.96 -92.71 -0.83 0.50 16 6 C 0.00 -0.01 11.89 83.12 0.99 0.98 16 7 C -0.18 -2.30 8.79 23.62 0.21 -2.10 16 8 C -0.26 -5.22 5.43 -19.04 -0.10 -5.33 16 9 C 0.58 14.63 7.37 86.62 0.64 15.27 16 10 O -0.58 -18.84 14.69 -4.13 -0.06 -18.91 16 11 N -0.61 -11.82 2.87 -850.86 -2.44 -14.26 16 12 C 0.07 0.86 9.09 127.77 1.16 2.02 16 13 C 0.12 2.16 5.54 86.38 0.48 2.64 16 14 C 0.12 3.00 6.00 86.38 0.52 3.52 16 15 N -0.71 -19.23 5.56 -463.05 -2.57 -21.80 16 16 C 0.53 20.75 7.85 87.66 0.69 21.43 16 17 O -0.57 -27.82 15.86 -3.05 -0.05 -27.87 16 18 C -0.13 -5.19 6.16 71.24 0.44 -4.75 16 19 S -0.15 -8.75 20.57 -56.49 -1.16 -9.91 16 20 C -0.55 -31.61 9.50 67.95 0.65 -30.97 16 21 H 0.08 4.49 7.80 -2.91 -0.02 4.47 16 22 C 0.01 0.67 5.49 84.86 0.47 1.14 16 23 N -0.91 -56.79 13.22 21.65 0.29 -56.51 16 24 Si 1.00 44.06 29.55 68.60 2.03 46.09 16 25 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 26 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 27 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 28 H 0.05 1.15 6.78 -2.38 -0.02 1.14 16 29 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.06 1.44 7.97 -2.39 -0.02 1.42 16 32 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.21 0.00 8.06 -2.91 -0.02 -0.02 16 34 H 0.16 1.35 6.60 -2.91 -0.02 1.33 16 35 H 0.08 0.57 7.40 -2.39 -0.02 0.56 16 36 H 0.08 0.78 8.03 -2.38 -0.02 0.76 16 37 H 0.08 0.96 5.91 -2.39 -0.01 0.95 16 38 H 0.12 1.40 8.07 -2.39 -0.02 1.38 16 39 H 0.08 1.76 7.36 -2.39 -0.02 1.74 16 40 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.42 7.97 8.47 -92.70 -0.79 7.19 16 43 H 0.12 4.12 8.14 -2.40 -0.02 4.10 16 44 H 0.11 4.05 8.14 -2.39 -0.02 4.03 16 45 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 Total: -1.00 -89.41 391.48 1.63 -87.77 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: -0.59 Total: 18.74 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: 7.28 Total: 2.90 kcal Atomic # 7 Polarization: -93.00 SS G_CDS: -5.81 Total: -98.81 kcal Atomic # 8 Polarization: -46.67 SS G_CDS: -0.11 Total: -46.78 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Atomic # 16 Polarization: -8.75 SS G_CDS: -1.16 Total: -9.91 kcal Total: -89.41 1.63 -87.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704182531.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.457 kcal (2) G-P(sol) polarization free energy of solvation -89.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds