Wall clock time and date at job start Tue Mar 31 2020 23:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34327 * 126.44446 * 2 1 4 4 N 1.34483 * 107.66651 * 179.77217 * 3 2 1 5 5 C 1.30259 * 108.69913 * 0.42313 * 4 3 2 6 6 C 1.50705 * 125.61629 * 179.83897 * 5 4 3 7 7 H 1.09000 * 109.46900 * 164.69600 * 6 5 4 8 8 C 1.52998 * 109.46873 * 284.69345 * 6 5 4 9 9 N 1.46902 * 109.47047 * 44.69501 * 6 5 4 10 10 C 1.46896 * 110.99720 * 155.00044 * 9 6 5 11 11 H 1.09008 * 112.85078 * 336.19299 * 10 9 6 12 12 C 1.53776 * 113.69048 * 107.46530 * 10 9 6 13 13 C 1.53785 * 87.08294 * 139.99215 * 12 10 9 14 14 H 1.08999 * 113.68976 * 220.00640 * 13 12 10 15 15 N 1.46500 * 113.61546 * 89.11216 * 13 12 10 16 16 C 1.34776 * 119.99472 * 107.50485 * 15 13 12 17 17 O 1.21280 * 120.00458 * 359.97438 * 16 15 13 18 18 C 1.50702 * 119.99564 * 180.02562 * 16 15 13 19 19 S 1.81008 * 109.46925 * 180.02562 * 18 16 15 20 20 C 1.76202 * 99.99767 * 179.97438 * 19 18 16 21 21 H 1.07996 * 120.00286 * 0.02562 * 20 19 18 22 22 C 1.38802 * 119.99642 * 180.02562 * 20 19 18 23 23 N 1.31625 * 120.00322 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99881 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47297 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47261 * 239.99700 * 24 22 20 27 27 H 1.48500 * 109.47454 * 119.99693 * 24 22 20 28 28 C 1.53780 * 87.07947 * 334.56763 * 13 12 10 29 29 O 1.33961 * 108.76053 * 359.57484 * 5 4 3 30 30 H 1.09000 * 109.46771 * 269.97161 * 1 2 3 31 31 H 1.08999 * 109.47042 * 29.96835 * 1 2 3 32 32 H 1.08996 * 109.47544 * 149.96814 * 1 2 3 33 33 H 1.07995 * 126.16713 * 0.03035 * 3 2 1 34 34 H 1.09003 * 109.46835 * 179.97438 * 8 6 5 35 35 H 1.09000 * 109.47611 * 300.00143 * 8 6 5 36 36 H 1.09000 * 109.47150 * 60.00408 * 8 6 5 37 37 H 1.00899 * 110.99951 * 278.95492 * 9 6 5 38 38 H 1.08998 * 113.61459 * 25.44125 * 12 10 9 39 39 H 1.09006 * 113.61321 * 254.53976 * 12 10 9 40 40 H 0.96999 * 120.00150 * 287.51113 * 15 13 12 41 41 H 1.08998 * 109.47573 * 60.00437 * 18 16 15 42 42 H 1.09000 * 109.46955 * 299.99406 * 18 16 15 43 43 H 0.97004 * 120.00251 * 0.02562 * 23 22 20 44 44 H 1.08995 * 113.61658 * 139.98103 * 28 13 12 45 45 H 1.09006 * 113.61353 * 270.88515 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5783 0.6477 0.0051 5 6 3.5765 -0.6549 -0.0009 6 6 4.8004 -1.5342 -0.0016 7 1 4.5164 -2.5524 0.2641 8 6 5.4319 -1.5281 -1.3952 9 7 5.7699 -1.0248 0.9775 10 6 6.6589 -2.0968 1.4447 11 1 6.2198 -3.0886 1.3356 12 6 8.0920 -1.9939 0.8965 13 6 8.5731 -2.4190 2.2939 14 1 9.4599 -1.8838 2.6333 15 7 8.6863 -3.8702 2.4593 16 6 9.9021 -4.4491 2.5157 17 8 10.9023 -3.7688 2.4290 18 6 10.0185 -5.9420 2.6852 19 16 11.7666 -6.4101 2.7254 20 6 11.6118 -8.1538 2.9265 21 1 10.6327 -8.6058 2.9854 22 6 12.7483 -8.9464 3.0091 23 7 13.9415 -8.3956 2.9368 24 14 12.5843 -10.7950 3.2215 25 1 11.1461 -11.1616 3.2741 26 1 13.2466 -11.2088 4.4846 27 1 13.2296 -11.4842 2.0753 28 6 7.2572 -1.8379 2.8375 29 8 2.3075 -1.0840 -0.0006 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3633 0.8903 -0.5133 32 1 -0.3634 -0.8896 -0.5143 33 1 1.9823 2.1112 0.0005 34 1 6.3174 -2.1637 -1.3956 35 1 4.7126 -1.9060 -2.1218 36 1 5.7160 -0.5099 -1.6610 37 1 6.3000 -0.2562 0.5953 38 1 8.3835 -0.9795 0.6242 39 1 8.3149 -2.7230 0.1174 40 1 7.8863 -4.4144 2.5282 41 1 9.5273 -6.4420 1.8505 42 1 9.5415 -6.2399 3.6190 43 1 14.0268 -7.4356 2.8261 44 1 6.8061 -2.4409 3.6255 45 1 7.3204 -0.7808 3.0959 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713941922.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:51 Heat of formation + Delta-G solvation = 0.540879 kcal Electronic energy + Delta-G solvation = -25722.996027 eV Core-core repulsion = 21868.862567 eV Total energy + Delta-G solvation = -3854.133460 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.65480 -40.35491 -38.53782 -36.37730 -34.92485 -33.26149 -32.54531 -32.44908 -30.03182 -28.84173 -27.24902 -25.93757 -24.90613 -24.35864 -23.56784 -22.09339 -21.23193 -20.79646 -19.66456 -18.35960 -17.58296 -17.08875 -16.77559 -16.25144 -15.82096 -15.69932 -15.09457 -14.89694 -14.65683 -14.42113 -13.94593 -13.87604 -13.81148 -13.62335 -13.54618 -13.29897 -12.94371 -12.83401 -12.73643 -12.62380 -12.40387 -12.09427 -12.05421 -11.91057 -11.70232 -11.57314 -11.02001 -10.91299 -10.79757 -10.60521 -10.22029 -9.60919 -9.54580 -9.10294 -9.03178 -8.98215 -8.81669 -8.23872 -6.68896 -6.63903 -4.01930 1.07916 2.15273 2.38074 2.87067 2.93239 3.33543 3.39363 3.49356 3.56132 3.64469 3.74446 4.22780 4.22991 4.32676 4.36268 4.45080 4.57193 4.63529 4.67746 4.71972 4.87690 4.89766 4.99341 4.99953 5.13357 5.20904 5.22963 5.36513 5.43848 5.45854 5.48600 5.56783 5.62764 5.69108 5.72746 5.73125 5.76644 5.91656 5.98158 5.98862 6.45894 6.65109 6.89919 7.43795 7.58810 7.91531 8.48104 8.48757 9.25410 10.80181 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024532 B = 0.001669 C = 0.001609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.098534 B =16773.375682 C =17395.066906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.054 4.054 3 C -0.044 4.044 4 N -0.468 5.468 5 C 0.204 3.796 6 C 0.184 3.816 7 H 0.104 0.896 8 C -0.178 4.178 9 N -0.663 5.663 10 C 0.068 3.932 11 H 0.099 0.901 12 C -0.179 4.179 13 C 0.124 3.876 14 H 0.105 0.895 15 N -0.720 5.720 16 C 0.533 3.467 17 O -0.515 6.515 18 C -0.131 4.131 19 S -0.116 6.116 20 C -0.608 4.608 21 H 0.067 0.933 22 C 0.035 3.965 23 N -0.885 5.885 24 Si 1.090 2.910 25 H -0.288 1.288 26 H -0.283 1.283 27 H -0.283 1.283 28 C -0.132 4.132 29 O -0.203 6.203 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.181 0.819 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.358 0.642 38 H 0.093 0.907 39 H 0.074 0.926 40 H 0.398 0.602 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.278 0.722 44 H 0.075 0.925 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.913 17.315 -6.874 33.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.107 4.107 3 C -0.182 4.182 4 N -0.196 5.196 5 C -0.004 4.004 6 C 0.072 3.928 7 H 0.122 0.878 8 C -0.237 4.237 9 N -0.295 5.295 10 C -0.042 4.042 11 H 0.117 0.883 12 C -0.220 4.220 13 C 0.018 3.982 14 H 0.123 0.877 15 N -0.374 5.374 16 C 0.319 3.681 17 O -0.389 6.389 18 C -0.282 4.282 19 S 0.110 5.890 20 C -0.756 4.756 21 H 0.085 0.915 22 C -0.175 4.175 23 N -0.519 5.519 24 Si 0.916 3.084 25 H -0.214 1.214 26 H -0.209 1.209 27 H -0.209 1.209 28 C -0.171 4.171 29 O -0.090 6.090 30 H 0.102 0.898 31 H 0.110 0.890 32 H 0.096 0.904 33 H 0.198 0.802 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.179 0.821 38 H 0.111 0.889 39 H 0.093 0.907 40 H 0.232 0.768 41 H 0.110 0.890 42 H 0.111 0.889 43 H 0.091 0.909 44 H 0.094 0.906 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -25.255 17.345 -6.320 31.282 hybrid contribution -2.769 -0.143 -0.780 2.881 sum -28.024 17.202 -7.100 33.640 Atomic orbital electron populations 1.20261 0.84052 1.04297 1.03811 1.23458 0.95005 0.84663 1.07617 1.23098 0.87959 1.00279 1.06878 1.70360 1.22690 1.09146 1.17403 1.26135 0.83876 0.90306 1.00119 1.19738 0.85364 0.95047 0.92656 0.87760 1.22521 1.01721 1.03742 0.95721 1.60110 1.19406 1.10285 1.39717 1.23225 0.90217 0.94323 0.96424 0.88297 1.24187 0.96628 1.02654 0.98524 1.21617 0.99128 0.81789 0.95707 0.87673 1.45686 1.08417 1.06933 1.76331 1.20307 0.82786 0.89870 0.75107 1.90704 1.36035 1.64649 1.47538 1.23321 1.06120 0.93681 1.05121 1.84836 0.99455 1.08606 1.96070 1.23767 0.98083 0.91113 1.62654 0.91517 1.26056 0.91300 1.06987 0.93179 1.70737 1.23644 1.14531 1.42993 0.83248 0.75160 0.72658 0.77297 1.21412 1.20868 1.20879 1.23459 0.94565 1.02533 0.96576 1.84368 1.17832 1.36723 1.70045 0.89796 0.89024 0.90403 0.80169 0.90520 0.91519 0.91115 0.82064 0.88887 0.90742 0.76764 0.88965 0.88900 0.90915 0.90605 0.88264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.26 10.43 36.01 0.38 0.12 16 2 C -0.05 -0.43 7.39 -35.69 -0.26 -0.70 16 3 C -0.04 -0.38 11.80 -17.77 -0.21 -0.59 16 4 N -0.47 -5.00 11.27 -11.10 -0.13 -5.13 16 5 C 0.20 2.00 7.19 -12.94 -0.09 1.91 16 6 C 0.18 1.38 3.12 -68.86 -0.21 1.17 16 7 H 0.10 0.69 7.46 -51.93 -0.39 0.31 16 8 C -0.18 -1.14 9.15 37.16 0.34 -0.80 16 9 N -0.66 -5.12 6.34 -100.10 -0.63 -5.76 16 10 C 0.07 0.50 3.87 -66.90 -0.26 0.24 16 11 H 0.10 0.67 7.48 -51.92 -0.39 0.28 16 12 C -0.18 -1.56 7.50 -25.92 -0.19 -1.75 16 13 C 0.12 1.34 4.32 -67.12 -0.29 1.05 16 14 H 0.11 1.37 7.46 -51.93 -0.39 0.98 16 15 N -0.72 -8.94 5.26 -53.01 -0.28 -9.21 16 16 C 0.53 9.58 7.85 -10.98 -0.09 9.49 16 17 O -0.52 -11.40 15.46 5.56 0.09 -11.31 16 18 C -0.13 -2.59 6.16 36.01 0.22 -2.37 16 19 S -0.12 -3.10 19.60 -107.50 -2.11 -5.21 16 20 C -0.61 -17.45 9.50 30.94 0.29 -17.16 16 21 H 0.07 1.84 7.80 -52.49 -0.41 1.43 16 22 C 0.04 1.02 5.49 -17.43 -0.10 0.93 16 23 N -0.88 -27.48 13.67 55.49 0.76 -26.72 16 24 Si 1.09 24.95 29.92 -169.99 -5.09 19.87 16 25 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 28 C -0.13 -1.09 7.63 -25.92 -0.20 -1.29 16 29 O -0.20 -2.01 10.77 5.38 0.06 -1.95 16 30 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.18 1.05 8.06 -52.49 -0.42 0.63 16 34 H 0.08 0.46 8.07 -51.93 -0.42 0.04 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.49 8.13 -51.93 -0.42 0.07 16 37 H 0.36 2.74 7.94 -39.29 -0.31 2.42 16 38 H 0.09 0.73 7.83 -51.93 -0.41 0.33 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.40 3.79 8.70 -40.82 -0.36 3.43 16 41 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 42 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 43 H 0.28 8.83 7.13 -40.82 -0.29 8.54 16 44 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 394.35 15.07 5.94 5.94 Total: -1.00 -36.69 394.35 -8.86 -45.55 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -6.80 Total: 3.67 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: -0.67 Total: -9.75 kcal Atomic # 7 Polarization: -46.54 SS G_CDS: -0.28 Total: -46.82 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: 0.14 Total: -13.26 kcal Atomic # 14 Polarization: 24.95 SS G_CDS: -5.09 Total: 19.87 kcal Atomic # 16 Polarization: -3.10 SS G_CDS: -2.11 Total: -5.21 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -36.69 -8.86 -45.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713941922.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.088 kcal (2) G-P(sol) polarization free energy of solvation -36.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds