Wall clock time and date at job start Tue Mar 31 2020 23:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50709 * 109.46936 * 2 1 4 4 C 1.37466 * 123.35316 * 265.01867 * 3 2 1 5 5 C 1.33811 * 115.10495 * 179.97438 * 4 3 2 6 6 S 1.70624 * 110.95290 * 359.72587 * 5 4 3 7 7 C 1.36647 * 123.35070 * 84.99840 * 3 2 1 8 8 C 1.46591 * 125.45828 * 0.02562 * 7 3 2 9 9 O 1.21693 * 119.99870 * 359.97438 * 8 7 3 10 10 N 1.34771 * 119.99644 * 180.02562 * 8 7 3 11 11 C 1.46505 * 119.99622 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47212 * 179.97438 * 11 10 8 13 13 H 1.09000 * 109.47325 * 294.99862 * 12 11 10 14 14 C 1.52994 * 109.47404 * 174.99693 * 12 11 10 15 15 N 1.46905 * 109.47325 * 54.99792 * 12 11 10 16 16 C 1.46898 * 111.00329 * 205.00325 * 15 12 11 17 17 C 1.50695 * 109.46941 * 179.97438 * 16 15 12 18 18 O 1.21290 * 120.00593 * 359.97438 * 17 16 15 19 19 N 1.34786 * 119.99809 * 179.97438 * 17 16 15 20 20 C 1.37091 * 119.99856 * 179.97438 * 19 17 16 21 21 H 1.07999 * 120.00173 * 0.02562 * 20 19 17 22 22 C 1.38956 * 120.00065 * 179.97438 * 20 19 17 23 23 N 1.31409 * 119.99753 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00139 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47014 * 60.00538 * 24 22 20 26 26 H 1.48504 * 109.46954 * 180.02562 * 24 22 20 27 27 H 1.48505 * 109.47214 * 300.00195 * 24 22 20 28 28 H 1.08997 * 109.46574 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47581 * 299.99995 * 1 2 3 30 30 H 1.09002 * 109.46751 * 60.00243 * 1 2 3 31 31 H 1.08994 * 109.47581 * 240.00005 * 2 1 3 32 32 H 1.09003 * 109.47263 * 119.99661 * 2 1 3 33 33 H 1.08002 * 122.44675 * 359.96609 * 4 3 2 34 34 H 1.07998 * 124.52623 * 179.97438 * 5 4 3 35 35 H 0.96996 * 120.00772 * 359.97438 * 10 8 7 36 36 H 1.09002 * 109.47068 * 299.99729 * 11 10 8 37 37 H 1.09001 * 109.47372 * 59.99816 * 11 10 8 38 38 H 1.09000 * 109.47476 * 300.00087 * 14 12 11 39 39 H 1.09008 * 109.46970 * 60.00049 * 14 12 11 40 40 H 1.08996 * 109.47654 * 179.97438 * 14 12 11 41 41 H 1.00899 * 110.99799 * 81.04285 * 15 12 11 42 42 H 1.09003 * 109.46664 * 299.99985 * 16 15 12 43 43 H 1.09002 * 109.47064 * 59.99547 * 16 15 12 44 44 H 0.96995 * 119.99647 * 359.97438 * 19 17 16 45 45 H 0.96996 * 119.99826 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3782 2.1002 -1.1439 5 6 2.8034 3.3545 -0.9527 6 16 2.7845 3.7592 0.7047 7 6 2.1889 2.1624 1.1371 8 6 1.9004 1.7023 2.4987 9 8 1.4843 0.5739 2.6843 10 7 2.0951 2.5294 3.5448 11 6 1.8073 2.0694 4.9057 12 6 2.1119 3.1927 5.8988 13 1 3.1803 3.4082 5.8872 14 6 1.6948 2.7574 7.3049 15 7 1.3649 4.3990 5.5180 16 6 2.0278 5.6095 6.0211 17 6 1.2348 6.8236 5.6113 18 8 0.2178 6.6935 4.9633 19 7 1.6558 8.0543 5.9647 20 6 0.9347 9.1589 5.5914 21 1 0.0291 9.0429 5.0145 22 6 1.3683 10.4276 5.9562 23 7 2.4699 10.5687 6.6586 24 14 0.3861 11.9327 5.4470 25 1 -0.9835 11.8450 6.0139 26 1 1.0558 13.1564 5.9563 27 1 0.3057 11.9933 3.9653 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 2.3118 1.6541 -2.1252 34 1 3.1130 4.0230 -1.7424 35 1 2.4264 3.4290 3.3969 36 1 0.7557 1.7927 4.9809 37 1 2.4282 1.2035 5.1355 38 1 0.6263 2.5419 7.3166 39 1 2.2491 1.8623 7.5876 40 1 1.9121 3.5574 8.0125 41 1 0.4099 4.3494 5.8396 42 1 2.0889 5.5650 7.1085 43 1 3.0325 5.6740 5.6032 44 1 2.4689 8.1584 6.4832 45 1 2.7728 11.4543 6.9129 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714308178.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:08 Heat of formation + Delta-G solvation = -51.641796 kcal Electronic energy + Delta-G solvation = -26598.672432 eV Core-core repulsion = 22742.276161 eV Total energy + Delta-G solvation = -3856.396271 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -39.94459 -38.58512 -38.02621 -36.81371 -34.17875 -33.77260 -32.78872 -31.35717 -30.87371 -29.50031 -26.67876 -26.27696 -24.96915 -23.92887 -22.46922 -21.35015 -21.04477 -19.37336 -18.81577 -18.17900 -17.92928 -16.39484 -15.98292 -15.86798 -15.58686 -15.23703 -14.94160 -14.65957 -14.52577 -14.14230 -13.99020 -13.72504 -13.70930 -13.28589 -13.11389 -13.08925 -12.65415 -12.48672 -12.37808 -12.20807 -11.98516 -11.72443 -11.60403 -11.54718 -11.43658 -11.11627 -11.05002 -11.00209 -10.75162 -10.46748 -10.24218 -9.85454 -9.53029 -9.13048 -8.78964 -8.54706 -8.53353 -8.14569 -7.99460 -6.44840 -3.85668 0.44146 1.42272 1.82054 2.28123 3.16591 3.17767 3.23817 3.24897 3.28128 3.86895 4.03063 4.26775 4.68987 4.74537 4.78622 4.95894 5.03773 5.09308 5.12172 5.18067 5.24178 5.28714 5.39313 5.46785 5.59019 5.59318 5.66827 5.68884 5.74207 5.85536 5.90046 5.94215 5.96885 6.01980 6.17888 6.22533 6.27564 6.38716 6.48921 7.10617 7.52144 7.54981 7.57376 8.02725 8.22267 8.57783 9.14768 9.50794 10.02141 10.72765 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012046 B = 0.002684 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2323.881459 B =10430.875270 C =12037.606846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.069 4.069 3 C -0.024 4.024 4 C -0.150 4.150 5 C -0.233 4.233 6 S 0.217 5.783 7 C -0.271 4.271 8 C 0.589 3.411 9 O -0.536 6.536 10 N -0.709 5.709 11 C 0.136 3.864 12 C 0.067 3.933 13 H 0.084 0.916 14 C -0.180 4.180 15 N -0.664 5.664 16 C 0.049 3.951 17 C 0.439 3.561 18 O -0.582 6.582 19 N -0.563 5.563 20 C -0.300 4.300 21 H 0.102 0.898 22 C 0.023 3.977 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.273 1.273 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.048 0.952 31 H 0.066 0.934 32 H 0.093 0.907 33 H 0.142 0.858 34 H 0.168 0.832 35 H 0.407 0.593 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.354 0.646 42 H 0.046 0.954 43 H 0.085 0.915 44 H 0.392 0.608 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.511 -17.820 -8.348 20.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.109 4.109 3 C -0.039 4.039 4 C -0.181 4.181 5 C -0.371 4.371 6 S 0.486 5.514 7 C -0.392 4.392 8 C 0.376 3.624 9 O -0.415 6.415 10 N -0.360 5.360 11 C 0.012 3.988 12 C -0.044 4.044 13 H 0.102 0.898 14 C -0.240 4.240 15 N -0.297 5.297 16 C -0.083 4.083 17 C 0.225 3.775 18 O -0.466 6.466 19 N -0.200 5.200 20 C -0.430 4.430 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.112 0.888 33 H 0.159 0.841 34 H 0.185 0.815 35 H 0.243 0.757 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.174 0.826 42 H 0.063 0.937 43 H 0.103 0.897 44 H 0.225 0.775 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.299 -17.096 -8.349 19.506 hybrid contribution -0.257 0.282 0.028 0.382 sum 4.042 -16.814 -8.321 19.191 Atomic orbital electron populations 1.21603 0.94362 1.01585 1.01912 1.20385 0.96483 0.90681 1.03322 1.19484 0.96516 0.97465 0.90449 1.19875 1.04378 0.94305 0.99578 1.25314 1.08151 1.01258 1.02377 1.83442 1.59150 1.10493 0.98283 1.24483 1.17325 0.99744 0.97616 1.16891 0.77751 0.84940 0.82841 1.90759 1.46457 1.19125 1.85197 1.45685 1.67108 1.17070 1.06109 1.21350 1.01499 0.95707 0.80265 1.21866 0.99214 0.90682 0.92653 0.89755 1.22425 1.02278 1.02151 0.97096 1.60175 1.06309 0.99597 1.63643 1.21725 0.98540 0.90211 0.97872 1.19793 0.87914 0.84122 0.85703 1.90537 1.26830 1.85880 1.43350 1.41855 1.25020 1.04537 1.48540 1.19648 1.07596 0.83551 1.32157 0.87979 1.25255 0.96627 0.99173 0.96813 1.69598 1.22171 1.24685 1.37860 0.85928 0.79389 0.79923 0.79052 1.19914 1.20974 1.19860 0.92499 0.92091 0.93277 0.91571 0.88822 0.84053 0.81473 0.75727 0.91295 0.91172 0.91931 0.91821 0.91887 0.82579 0.93651 0.89654 0.77491 0.91804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.78 37.16 0.36 -1.11 16 2 C -0.07 -0.76 5.50 -27.88 -0.15 -0.91 16 3 C -0.02 -0.28 5.16 -105.47 -0.54 -0.82 16 4 C -0.15 -1.50 9.96 -41.42 -0.41 -1.92 16 5 C -0.23 -2.28 10.92 29.18 0.32 -1.96 16 6 S 0.22 2.46 22.16 -107.50 -2.38 0.08 16 7 C -0.27 -3.52 6.45 -36.79 -0.24 -3.76 16 8 C 0.59 8.39 7.78 -12.89 -0.10 8.29 16 9 O -0.54 -8.55 13.72 5.20 0.07 -8.48 16 10 N -0.71 -9.18 5.38 -61.65 -0.33 -9.52 16 11 C 0.14 1.57 5.37 -4.04 -0.02 1.55 16 12 C 0.07 0.73 2.75 -67.71 -0.19 0.54 16 13 H 0.08 0.86 7.80 -51.93 -0.40 0.45 16 14 C -0.18 -1.69 9.16 37.15 0.34 -1.35 16 15 N -0.66 -9.61 5.31 -108.00 -0.57 -10.18 16 16 C 0.05 0.79 5.97 -4.98 -0.03 0.76 16 17 C 0.44 9.87 7.82 -10.98 -0.09 9.78 16 18 O -0.58 -15.22 15.78 5.55 0.09 -15.13 16 19 N -0.56 -13.78 5.29 -10.96 -0.06 -13.84 16 20 C -0.30 -8.19 9.68 -14.93 -0.14 -8.33 16 21 H 0.10 2.93 7.16 -52.49 -0.38 2.56 16 22 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 23 N -0.90 -24.08 13.05 55.50 0.72 -23.36 16 24 Si 0.93 20.76 29.55 -169.99 -5.02 15.73 16 25 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 26 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 27 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.79 7.60 -51.93 -0.39 0.40 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.58 8.12 -51.93 -0.42 0.15 16 32 H 0.09 1.17 6.33 -51.93 -0.33 0.84 16 33 H 0.14 1.10 8.06 -52.49 -0.42 0.67 16 34 H 0.17 1.22 8.06 -52.49 -0.42 0.80 16 35 H 0.41 5.28 7.25 -40.82 -0.30 4.98 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 39 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 40 H 0.06 0.62 7.45 -51.93 -0.39 0.23 16 41 H 0.35 5.52 8.17 -39.29 -0.32 5.20 16 42 H 0.05 0.66 7.44 -51.93 -0.39 0.27 16 43 H 0.09 1.24 8.06 -51.93 -0.42 0.82 16 44 H 0.39 9.16 7.90 -40.82 -0.32 8.84 16 45 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 389.90 15.07 5.88 5.88 Total: -1.00 -31.55 389.90 -9.17 -40.72 By element: Atomic # 1 Polarization: 23.40 SS G_CDS: -6.57 Total: 16.83 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -0.99 Total: 1.27 kcal Atomic # 7 Polarization: -56.65 SS G_CDS: -0.24 Total: -56.89 kcal Atomic # 8 Polarization: -23.77 SS G_CDS: 0.16 Total: -23.61 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 16 Polarization: 2.46 SS G_CDS: -2.38 Total: 0.08 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.55 -9.17 -40.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714308178.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.923 kcal (2) G-P(sol) polarization free energy of solvation -31.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds