Wall clock time and date at job start Tue Mar 31 2020 23:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50709 * 109.46936 * 2 1 4 4 C 1.37466 * 123.35316 * 265.01867 * 3 2 1 5 5 C 1.33811 * 115.10495 * 179.97438 * 4 3 2 6 6 S 1.70624 * 110.95290 * 359.72587 * 5 4 3 7 7 C 1.36647 * 123.35070 * 84.99840 * 3 2 1 8 8 C 1.46591 * 125.45828 * 0.02562 * 7 3 2 9 9 O 1.21693 * 119.99870 * 359.97438 * 8 7 3 10 10 N 1.34771 * 119.99644 * 180.02562 * 8 7 3 11 11 C 1.46505 * 119.99622 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47212 * 179.97438 * 11 10 8 13 13 H 1.09000 * 109.47325 * 294.99862 * 12 11 10 14 14 C 1.52994 * 109.47404 * 174.99693 * 12 11 10 15 15 N 1.46905 * 109.47325 * 54.99792 * 12 11 10 16 16 C 1.46898 * 111.00329 * 205.00325 * 15 12 11 17 17 C 1.50695 * 109.46941 * 179.97438 * 16 15 12 18 18 O 1.21290 * 120.00593 * 359.97438 * 17 16 15 19 19 N 1.34786 * 119.99809 * 179.97438 * 17 16 15 20 20 C 1.37091 * 119.99856 * 179.97438 * 19 17 16 21 21 H 1.07999 * 120.00173 * 0.02562 * 20 19 17 22 22 C 1.38956 * 120.00065 * 179.97438 * 20 19 17 23 23 N 1.31409 * 119.99753 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00139 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47014 * 60.00538 * 24 22 20 26 26 H 1.48504 * 109.46954 * 180.02562 * 24 22 20 27 27 H 1.48505 * 109.47214 * 300.00195 * 24 22 20 28 28 H 1.08997 * 109.46574 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47581 * 299.99995 * 1 2 3 30 30 H 1.09002 * 109.46751 * 60.00243 * 1 2 3 31 31 H 1.08994 * 109.47581 * 240.00005 * 2 1 3 32 32 H 1.09003 * 109.47263 * 119.99661 * 2 1 3 33 33 H 1.08002 * 122.44675 * 359.96609 * 4 3 2 34 34 H 1.07998 * 124.52623 * 179.97438 * 5 4 3 35 35 H 0.96996 * 120.00772 * 359.97438 * 10 8 7 36 36 H 1.09002 * 109.47068 * 299.99729 * 11 10 8 37 37 H 1.09001 * 109.47372 * 59.99816 * 11 10 8 38 38 H 1.09000 * 109.47476 * 300.00087 * 14 12 11 39 39 H 1.09008 * 109.46970 * 60.00049 * 14 12 11 40 40 H 1.08996 * 109.47654 * 179.97438 * 14 12 11 41 41 H 1.00899 * 110.99799 * 81.04285 * 15 12 11 42 42 H 1.09003 * 109.46664 * 299.99985 * 16 15 12 43 43 H 1.09002 * 109.47064 * 59.99547 * 16 15 12 44 44 H 0.96995 * 119.99647 * 359.97438 * 19 17 16 45 45 H 0.96996 * 119.99826 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3782 2.1002 -1.1439 5 6 2.8034 3.3545 -0.9527 6 16 2.7845 3.7592 0.7047 7 6 2.1889 2.1624 1.1371 8 6 1.9004 1.7023 2.4987 9 8 1.4843 0.5739 2.6843 10 7 2.0951 2.5294 3.5448 11 6 1.8073 2.0694 4.9057 12 6 2.1119 3.1927 5.8988 13 1 3.1803 3.4082 5.8872 14 6 1.6948 2.7574 7.3049 15 7 1.3649 4.3990 5.5180 16 6 2.0278 5.6095 6.0211 17 6 1.2348 6.8236 5.6113 18 8 0.2178 6.6935 4.9633 19 7 1.6558 8.0543 5.9647 20 6 0.9347 9.1589 5.5914 21 1 0.0291 9.0429 5.0145 22 6 1.3683 10.4276 5.9562 23 7 2.4699 10.5687 6.6586 24 14 0.3861 11.9327 5.4470 25 1 -0.9835 11.8450 6.0139 26 1 1.0558 13.1564 5.9563 27 1 0.3057 11.9933 3.9653 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 2.3118 1.6541 -2.1252 34 1 3.1130 4.0230 -1.7424 35 1 2.4264 3.4290 3.3969 36 1 0.7557 1.7927 4.9809 37 1 2.4282 1.2035 5.1355 38 1 0.6263 2.5419 7.3166 39 1 2.2491 1.8623 7.5876 40 1 1.9121 3.5574 8.0125 41 1 0.4099 4.3494 5.8396 42 1 2.0889 5.5650 7.1085 43 1 3.0325 5.6740 5.6032 44 1 2.4689 8.1584 6.4832 45 1 2.7728 11.4543 6.9129 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714308178.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:07 Heat of formation + Delta-G solvation = -74.077540 kcal Electronic energy + Delta-G solvation = -26599.645319 eV Core-core repulsion = 22742.276161 eV Total energy + Delta-G solvation = -3857.369158 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.96195 -40.17656 -39.05896 -37.98210 -35.95701 -35.06352 -33.63637 -33.26219 -32.07296 -30.40250 -27.95712 -27.47115 -25.97087 -25.50818 -23.29910 -22.29191 -22.03615 -21.10154 -19.94562 -19.75845 -19.06518 -17.81249 -17.17976 -16.85316 -16.70554 -16.59522 -16.30873 -15.98507 -15.83607 -15.51586 -15.05703 -14.98947 -14.61686 -14.53715 -14.35652 -13.94586 -13.70974 -13.65645 -13.43951 -13.34311 -13.23850 -13.05600 -12.82773 -12.76870 -12.53134 -12.41166 -12.38316 -12.12304 -11.99354 -11.89642 -11.61064 -11.48407 -10.91394 -10.32380 -10.15077 -9.99368 -9.68924 -9.41470 -9.34696 -8.45271 -5.93355 -0.44395 0.55022 0.98594 1.40173 1.42348 1.43232 1.52659 2.08499 2.16077 2.25187 2.30031 2.90533 3.22569 3.53204 3.82971 3.87283 3.91020 4.10097 4.19827 4.31341 4.33634 4.35604 4.48348 4.49563 4.54453 4.61647 4.65358 4.75522 4.78101 4.88573 4.90915 4.99286 5.08143 5.10836 5.24938 5.32464 5.40048 5.42418 5.49584 5.55683 5.89560 6.10513 6.36209 6.51788 6.62405 7.14907 7.17202 7.59260 8.14873 8.71832 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012046 B = 0.002684 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2323.881459 B =10430.875270 C =12037.606846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.069 4.069 3 C -0.026 4.026 4 C -0.155 4.155 5 C -0.220 4.220 6 S 0.200 5.800 7 C -0.302 4.302 8 C 0.583 3.417 9 O -0.562 6.562 10 N -0.708 5.708 11 C 0.137 3.863 12 C 0.075 3.925 13 H 0.100 0.900 14 C -0.175 4.175 15 N -0.676 5.676 16 C 0.065 3.935 17 C 0.438 3.562 18 O -0.622 6.622 19 N -0.573 5.573 20 C -0.332 4.332 21 H 0.078 0.922 22 C -0.012 4.012 23 N -0.920 5.920 24 Si 0.989 3.011 25 H -0.273 1.273 26 H -0.271 1.271 27 H -0.272 1.272 28 H 0.069 0.931 29 H 0.030 0.970 30 H 0.059 0.941 31 H 0.093 0.907 32 H 0.073 0.927 33 H 0.170 0.830 34 H 0.196 0.804 35 H 0.406 0.594 36 H 0.056 0.944 37 H 0.083 0.917 38 H 0.058 0.942 39 H 0.083 0.917 40 H 0.062 0.938 41 H 0.346 0.654 42 H 0.069 0.931 43 H 0.108 0.892 44 H 0.396 0.604 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.516 -18.068 -9.153 20.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.108 4.108 3 C -0.042 4.042 4 C -0.185 4.185 5 C -0.358 4.358 6 S 0.469 5.531 7 C -0.422 4.422 8 C 0.371 3.629 9 O -0.444 6.444 10 N -0.358 5.358 11 C 0.013 3.987 12 C -0.035 4.035 13 H 0.118 0.882 14 C -0.234 4.234 15 N -0.309 5.309 16 C -0.067 4.067 17 C 0.226 3.774 18 O -0.509 6.509 19 N -0.211 5.211 20 C -0.462 4.462 21 H 0.096 0.904 22 C -0.211 4.211 23 N -0.561 5.561 24 Si 0.813 3.187 25 H -0.198 1.198 26 H -0.196 1.196 27 H -0.197 1.197 28 H 0.088 0.912 29 H 0.049 0.951 30 H 0.078 0.922 31 H 0.111 0.889 32 H 0.092 0.908 33 H 0.188 0.812 34 H 0.213 0.787 35 H 0.242 0.758 36 H 0.074 0.926 37 H 0.101 0.899 38 H 0.077 0.923 39 H 0.101 0.899 40 H 0.081 0.919 41 H 0.165 0.835 42 H 0.087 0.913 43 H 0.126 0.874 44 H 0.230 0.770 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.336 -17.351 -9.130 20.319 hybrid contribution -0.574 0.285 0.225 0.679 sum 4.762 -17.066 -8.905 19.830 Atomic orbital electron populations 1.21559 0.94393 1.02147 1.00916 1.20394 0.96385 0.90395 1.03606 1.19821 0.95683 0.97841 0.90824 1.20137 1.03962 0.94299 1.00130 1.25675 1.06744 1.01542 1.01800 1.83463 1.59531 1.10013 1.00088 1.24499 1.19421 1.00867 0.97421 1.17169 0.77378 0.84743 0.83652 1.90733 1.47812 1.20115 1.85728 1.45741 1.66684 1.16870 1.06484 1.21418 1.01016 0.96408 0.79873 1.21882 0.99478 0.88827 0.93290 0.88238 1.22368 1.02358 1.02980 0.95691 1.60141 1.06157 1.00291 1.64270 1.21580 0.98109 0.87724 0.99280 1.20903 0.87480 0.85175 0.83849 1.90510 1.28843 1.86692 1.44820 1.41918 1.25176 1.04800 1.49179 1.19600 1.07823 0.85296 1.33477 0.90435 1.25979 0.97487 1.01218 0.96450 1.69656 1.22859 1.25542 1.38042 0.85046 0.78077 0.76947 0.78635 1.19843 1.19559 1.19732 0.91208 0.95054 0.92154 0.88890 0.90838 0.81241 0.78687 0.75766 0.92570 0.89915 0.92305 0.89853 0.91854 0.83508 0.91313 0.87432 0.76974 0.91347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.79 9.78 71.98 0.70 -2.09 16 2 C -0.07 -1.44 5.50 29.85 0.16 -1.28 16 3 C -0.03 -0.58 5.16 -20.42 -0.11 -0.69 16 4 C -0.15 -2.76 9.96 21.08 0.21 -2.55 16 5 C -0.22 -3.83 10.92 66.81 0.73 -3.10 16 6 S 0.20 4.44 22.16 -56.49 -1.25 3.19 16 7 C -0.30 -7.88 6.45 24.08 0.16 -7.72 16 8 C 0.58 17.04 7.78 86.42 0.67 17.71 16 9 O -0.56 -18.58 13.72 -4.33 -0.06 -18.64 16 10 N -0.71 -18.50 5.38 -467.17 -2.52 -21.01 16 11 C 0.14 3.10 5.37 86.38 0.46 3.57 16 12 C 0.08 1.53 2.75 44.91 0.12 1.65 16 13 H 0.10 1.77 7.80 -2.39 -0.02 1.75 16 14 C -0.17 -2.94 9.16 71.98 0.66 -2.28 16 15 N -0.68 -19.08 5.31 -495.59 -2.63 -21.71 16 16 C 0.07 2.01 5.97 85.56 0.51 2.52 16 17 C 0.44 19.82 7.82 87.65 0.69 20.51 16 18 O -0.62 -33.35 15.78 -3.06 -0.05 -33.39 16 19 N -0.57 -28.38 5.29 -306.98 -1.62 -30.00 16 20 C -0.33 -18.50 9.68 84.04 0.81 -17.69 16 21 H 0.08 4.62 7.16 -2.91 -0.02 4.60 16 22 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 23 N -0.92 -48.76 13.05 21.66 0.28 -48.48 16 24 Si 0.99 42.38 29.55 68.60 2.03 44.40 16 25 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 26 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 27 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 28 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.03 0.83 7.60 -2.39 -0.02 0.81 16 30 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.09 1.42 8.12 -2.39 -0.02 1.40 16 32 H 0.07 1.86 6.33 -2.39 -0.02 1.85 16 33 H 0.17 2.02 8.06 -2.91 -0.02 2.00 16 34 H 0.20 2.22 8.06 -2.91 -0.02 2.20 16 35 H 0.41 10.60 7.25 -92.71 -0.67 9.92 16 36 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.06 1.04 8.13 -2.39 -0.02 1.03 16 39 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 40 H 0.06 1.09 7.45 -2.39 -0.02 1.07 16 41 H 0.35 10.79 8.17 -89.69 -0.73 10.05 16 42 H 0.07 1.84 7.44 -2.39 -0.02 1.83 16 43 H 0.11 2.89 8.06 -2.39 -0.02 2.87 16 44 H 0.40 18.57 7.90 -92.71 -0.73 17.84 16 45 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 Total: -1.00 -69.79 389.90 -0.67 -70.46 By element: Atomic # 1 Polarization: 47.86 SS G_CDS: -1.10 Total: 46.77 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: 6.25 Total: 8.42 kcal Atomic # 7 Polarization: -114.72 SS G_CDS: -6.49 Total: -121.21 kcal Atomic # 8 Polarization: -51.92 SS G_CDS: -0.11 Total: -52.03 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.40 kcal Atomic # 16 Polarization: 4.44 SS G_CDS: -1.25 Total: 3.19 kcal Total: -69.79 -0.67 -70.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714308178.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.620 kcal (2) G-P(sol) polarization free energy of solvation -69.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds