Wall clock time and date at job start Tue Mar 31 2020 23:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50697 * 109.47241 * 2 1 4 4 C 1.37477 * 123.35391 * 265.02561 * 3 2 1 5 5 C 1.33820 * 115.09995 * 179.97438 * 4 3 2 6 6 S 1.70614 * 110.95738 * 0.02562 * 5 4 3 7 7 C 1.36653 * 123.34878 * 85.00197 * 3 2 1 8 8 C 1.46575 * 125.45735 * 0.28673 * 7 3 2 9 9 O 1.21697 * 120.00168 * 359.72040 * 8 7 3 10 10 N 1.34778 * 119.99949 * 179.71779 * 8 7 3 11 11 C 1.46497 * 120.00222 * 179.97438 * 10 8 7 12 12 H 1.09001 * 109.47255 * 35.00043 * 11 10 8 13 13 C 1.52994 * 109.47348 * 275.00184 * 11 10 8 14 14 C 1.53007 * 109.47405 * 154.99881 * 11 10 8 15 15 N 1.46900 * 109.46782 * 305.00229 * 14 11 10 16 16 C 1.46898 * 110.99598 * 179.97438 * 15 14 11 17 17 C 1.50698 * 109.47219 * 179.97438 * 16 15 14 18 18 O 1.21297 * 119.99875 * 0.02562 * 17 16 15 19 19 N 1.34775 * 120.00352 * 180.02562 * 17 16 15 20 20 C 1.37104 * 120.00255 * 180.02562 * 19 17 16 21 21 H 1.08001 * 119.99569 * 359.97438 * 20 19 17 22 22 C 1.38950 * 119.99958 * 180.02562 * 20 19 17 23 23 N 1.31410 * 120.00002 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00004 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47439 * 59.99462 * 24 22 20 26 26 H 1.48491 * 109.47269 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.46740 * 299.99553 * 24 22 20 28 28 H 1.08996 * 109.47169 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46846 * 299.99882 * 1 2 3 30 30 H 1.09002 * 109.47537 * 59.99709 * 1 2 3 31 31 H 1.09000 * 109.47058 * 240.00623 * 2 1 3 32 32 H 1.09002 * 109.47537 * 120.00291 * 2 1 3 33 33 H 1.07995 * 122.44979 * 359.97438 * 4 3 2 34 34 H 1.08003 * 124.51996 * 179.97438 * 5 4 3 35 35 H 0.97005 * 120.00165 * 0.02562 * 10 8 7 36 36 H 1.09005 * 109.47382 * 59.99687 * 13 11 10 37 37 H 1.09007 * 109.47282 * 179.97438 * 13 11 10 38 38 H 1.09003 * 109.46921 * 299.99579 * 13 11 10 39 39 H 1.09002 * 109.46708 * 65.00076 * 14 11 10 40 40 H 1.08998 * 109.46959 * 185.00272 * 14 11 10 41 41 H 1.00902 * 111.00476 * 56.04917 * 15 14 11 42 42 H 1.08998 * 109.47329 * 300.00203 * 16 15 14 43 43 H 1.09000 * 109.47305 * 60.00197 * 16 15 14 44 44 H 0.97001 * 119.99781 * 359.97438 * 19 17 16 45 45 H 0.97003 * 119.99929 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3781 2.1002 -1.1440 5 6 2.8034 3.3545 -0.9527 6 16 2.7926 3.7563 0.7055 7 6 2.1890 2.1622 1.1372 8 6 1.9057 1.7003 2.4991 9 8 1.4898 0.5718 2.6848 10 7 2.1058 2.5255 3.5458 11 6 1.8221 2.0641 4.9070 12 1 2.0670 1.0052 4.9902 13 6 0.3381 2.2701 5.2165 14 6 2.6663 2.8625 5.9025 15 7 4.0846 2.7614 5.5333 16 6 4.9272 3.5180 6.4690 17 6 6.3719 3.3907 6.0595 18 8 6.6702 2.7346 5.0839 19 7 7.3325 4.0059 6.7773 20 6 8.6469 3.8905 6.4045 21 1 8.9124 3.3063 5.5359 22 6 9.6372 4.5243 7.1449 23 7 9.3141 5.2347 8.2021 24 14 11.4280 4.3665 6.6374 25 1 11.6034 4.9080 5.2658 26 1 12.2798 5.1308 7.5835 27 1 11.8243 2.9355 6.6590 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 2.3115 1.6543 -2.1253 34 1 3.1130 4.0230 -1.7424 35 1 2.4369 3.4252 3.3978 36 1 -0.2634 1.7013 4.5073 37 1 0.1269 1.9263 6.2292 38 1 0.0932 3.3290 5.1334 39 1 2.3593 3.9081 5.8826 40 1 2.5224 2.4604 6.9054 41 1 4.2339 3.0681 4.5837 42 1 4.6357 4.5682 6.4527 43 1 4.7990 3.1210 7.4760 44 1 7.0939 4.5309 7.5573 45 1 10.0055 5.6775 8.7188 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715962296.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:17 Heat of formation + Delta-G solvation = -49.084425 kcal Electronic energy + Delta-G solvation = -26615.596965 eV Core-core repulsion = 22759.311590 eV Total energy + Delta-G solvation = -3856.285375 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.15489 -38.54078 -38.12467 -36.57171 -34.28765 -33.66034 -32.87187 -31.57317 -31.19253 -29.15122 -27.61435 -25.60693 -24.99580 -23.32541 -22.58594 -22.23986 -20.71709 -19.43794 -18.97112 -18.33334 -17.88282 -16.45220 -16.31631 -15.88725 -15.43838 -15.32413 -14.98341 -14.52659 -14.46081 -14.22247 -13.95902 -13.84156 -13.75768 -13.50840 -13.14351 -13.06997 -12.69846 -12.54322 -12.42274 -12.07381 -11.95447 -11.76212 -11.62930 -11.61713 -11.48051 -11.17347 -11.06708 -10.98653 -10.85338 -10.44689 -10.21925 -9.91706 -9.50620 -9.28058 -8.93589 -8.64590 -8.48072 -8.10264 -7.96827 -6.42356 -3.83153 0.34532 1.30178 1.69055 2.20465 2.99755 3.14351 3.19769 3.25432 3.30001 3.89652 4.04019 4.26913 4.61211 4.64143 4.82912 4.96005 4.99432 5.02752 5.16448 5.20262 5.21923 5.26191 5.33125 5.41662 5.51562 5.54319 5.59768 5.61510 5.75391 5.81990 5.89585 5.91956 5.95458 6.04674 6.08729 6.20641 6.24843 6.33895 6.41178 7.13375 7.33645 7.54527 7.57470 8.05389 8.09797 8.60595 9.17236 9.53373 10.05009 10.75306 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013238 B = 0.002519 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.683356 B =11114.088082 C =12398.383968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.073 4.073 3 C -0.018 4.018 4 C -0.148 4.148 5 C -0.227 4.227 6 S 0.199 5.801 7 C -0.270 4.270 8 C 0.597 3.403 9 O -0.523 6.523 10 N -0.720 5.720 11 C 0.146 3.854 12 H 0.101 0.899 13 C -0.161 4.161 14 C 0.049 3.951 15 N -0.667 5.667 16 C 0.050 3.950 17 C 0.439 3.561 18 O -0.582 6.582 19 N -0.563 5.563 20 C -0.299 4.299 21 H 0.102 0.898 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.931 3.069 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.273 1.273 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.047 0.953 31 H 0.068 0.932 32 H 0.096 0.904 33 H 0.144 0.856 34 H 0.168 0.832 35 H 0.393 0.607 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.055 0.945 39 H 0.032 0.968 40 H 0.089 0.911 41 H 0.347 0.653 42 H 0.044 0.956 43 H 0.088 0.912 44 H 0.392 0.608 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.939 -1.180 -12.751 23.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.112 4.112 3 C -0.034 4.034 4 C -0.179 4.179 5 C -0.365 4.365 6 S 0.468 5.532 7 C -0.390 4.390 8 C 0.384 3.616 9 O -0.401 6.401 10 N -0.371 5.371 11 C 0.042 3.958 12 H 0.119 0.881 13 C -0.220 4.220 14 C -0.081 4.081 15 N -0.300 5.300 16 C -0.083 4.083 17 C 0.225 3.775 18 O -0.466 6.466 19 N -0.200 5.200 20 C -0.429 4.429 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.544 5.544 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.087 0.913 32 H 0.115 0.885 33 H 0.161 0.839 34 H 0.186 0.814 35 H 0.227 0.773 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.050 0.950 40 H 0.107 0.893 41 H 0.167 0.833 42 H 0.062 0.938 43 H 0.106 0.894 44 H 0.225 0.775 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -19.399 -1.569 -11.962 22.844 hybrid contribution 0.572 0.644 -0.986 1.309 sum -18.828 -0.925 -12.948 22.869 Atomic orbital electron populations 1.21590 0.94391 1.01690 1.01597 1.20422 0.96378 0.90630 1.03771 1.19512 0.96069 0.97366 0.90428 1.19915 1.04098 0.94197 0.99711 1.25251 1.07922 1.01506 1.01833 1.83094 1.59799 1.11401 0.98923 1.24446 1.17087 0.99928 0.97580 1.16816 0.77312 0.84817 0.82663 1.90778 1.45744 1.18561 1.84991 1.45895 1.68019 1.16598 1.06637 1.21071 0.94008 1.01053 0.79682 0.88106 1.22154 0.95553 1.01963 1.02343 1.22324 0.88466 0.97947 0.99324 1.60023 1.03294 1.60070 1.06607 1.21698 0.93239 0.95895 0.97461 1.19798 0.86400 0.84879 0.86442 1.90537 1.82772 1.44158 1.29091 1.41853 1.06150 1.45043 1.26949 1.19656 0.81377 1.29762 1.12111 0.87985 1.25257 1.00531 0.96417 0.95709 1.69603 1.34753 1.32748 1.17253 0.85919 0.81525 0.78525 0.78269 1.19923 1.20972 1.19858 0.92385 0.92298 0.93352 0.91343 0.88544 0.83872 0.81402 0.77253 0.91808 0.91247 0.92552 0.94969 0.89260 0.83313 0.93838 0.89407 0.77466 0.91821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.31 9.78 37.15 0.36 -0.94 16 2 C -0.07 -0.78 5.50 -27.89 -0.15 -0.94 16 3 C -0.02 -0.21 5.16 -105.47 -0.54 -0.75 16 4 C -0.15 -1.40 9.96 -41.41 -0.41 -1.81 16 5 C -0.23 -2.01 10.92 29.18 0.32 -1.69 16 6 S 0.20 1.95 22.16 -107.50 -2.38 -0.44 16 7 C -0.27 -3.28 6.45 -36.79 -0.24 -3.52 16 8 C 0.60 8.08 7.74 -12.90 -0.10 7.98 16 9 O -0.52 -8.19 13.39 5.19 0.07 -8.12 16 10 N -0.72 -8.47 4.35 -55.15 -0.24 -8.71 16 11 C 0.15 1.67 2.88 -67.93 -0.20 1.47 16 12 H 0.10 1.39 7.58 -51.93 -0.39 0.99 16 13 C -0.16 -1.49 9.48 37.15 0.35 -1.13 16 14 C 0.05 0.57 5.30 -3.82 -0.02 0.55 16 15 N -0.67 -10.63 6.12 -115.06 -0.70 -11.34 16 16 C 0.05 0.86 6.17 -4.98 -0.03 0.83 16 17 C 0.44 10.36 7.82 -10.99 -0.09 10.27 16 18 O -0.58 -15.90 15.78 5.54 0.09 -15.81 16 19 N -0.56 -14.23 5.29 -10.96 -0.06 -14.29 16 20 C -0.30 -8.36 9.68 -14.93 -0.14 -8.51 16 21 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 23 N -0.90 -24.47 13.05 55.50 0.72 -23.74 16 24 Si 0.93 21.09 29.55 -169.99 -5.02 16.06 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.66 7.62 -51.93 -0.40 0.27 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.61 8.12 -51.93 -0.42 0.19 16 32 H 0.10 1.25 6.32 -51.93 -0.33 0.93 16 33 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 34 H 0.17 1.06 8.06 -52.48 -0.42 0.63 16 35 H 0.39 4.10 7.27 -40.82 -0.30 3.81 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.35 5.75 7.28 -39.29 -0.29 5.47 16 42 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 44 H 0.39 9.42 7.90 -40.82 -0.32 9.10 16 45 H 0.27 6.99 8.31 -40.82 -0.34 6.66 16 LS Contribution 390.29 15.07 5.88 5.88 Total: -1.00 -32.98 390.29 -9.24 -42.22 By element: Atomic # 1 Polarization: 22.58 SS G_CDS: -6.60 Total: 15.98 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: -0.99 Total: 2.32 kcal Atomic # 7 Polarization: -57.80 SS G_CDS: -0.28 Total: -58.08 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: 0.16 Total: -23.94 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: 1.95 SS G_CDS: -2.38 Total: -0.44 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.98 -9.24 -42.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715962296.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.866 kcal (2) G-P(sol) polarization free energy of solvation -32.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds