Wall clock time and date at job start Tue Mar 31 2020 23:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50697 * 109.47241 * 2 1 4 4 C 1.37477 * 123.35391 * 265.02561 * 3 2 1 5 5 C 1.33820 * 115.09995 * 179.97438 * 4 3 2 6 6 S 1.70614 * 110.95738 * 0.02562 * 5 4 3 7 7 C 1.36653 * 123.34878 * 85.00197 * 3 2 1 8 8 C 1.46575 * 125.45735 * 0.28673 * 7 3 2 9 9 O 1.21697 * 120.00168 * 359.72040 * 8 7 3 10 10 N 1.34778 * 119.99949 * 179.71779 * 8 7 3 11 11 C 1.46497 * 120.00222 * 179.97438 * 10 8 7 12 12 H 1.09001 * 109.47255 * 35.00043 * 11 10 8 13 13 C 1.52994 * 109.47348 * 275.00184 * 11 10 8 14 14 C 1.53007 * 109.47405 * 154.99881 * 11 10 8 15 15 N 1.46900 * 109.46782 * 305.00229 * 14 11 10 16 16 C 1.46898 * 110.99598 * 179.97438 * 15 14 11 17 17 C 1.50698 * 109.47219 * 179.97438 * 16 15 14 18 18 O 1.21297 * 119.99875 * 0.02562 * 17 16 15 19 19 N 1.34775 * 120.00352 * 180.02562 * 17 16 15 20 20 C 1.37104 * 120.00255 * 180.02562 * 19 17 16 21 21 H 1.08001 * 119.99569 * 359.97438 * 20 19 17 22 22 C 1.38950 * 119.99958 * 180.02562 * 20 19 17 23 23 N 1.31410 * 120.00002 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00004 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47439 * 59.99462 * 24 22 20 26 26 H 1.48491 * 109.47269 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.46740 * 299.99553 * 24 22 20 28 28 H 1.08996 * 109.47169 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46846 * 299.99882 * 1 2 3 30 30 H 1.09002 * 109.47537 * 59.99709 * 1 2 3 31 31 H 1.09000 * 109.47058 * 240.00623 * 2 1 3 32 32 H 1.09002 * 109.47537 * 120.00291 * 2 1 3 33 33 H 1.07995 * 122.44979 * 359.97438 * 4 3 2 34 34 H 1.08003 * 124.51996 * 179.97438 * 5 4 3 35 35 H 0.97005 * 120.00165 * 0.02562 * 10 8 7 36 36 H 1.09005 * 109.47382 * 59.99687 * 13 11 10 37 37 H 1.09007 * 109.47282 * 179.97438 * 13 11 10 38 38 H 1.09003 * 109.46921 * 299.99579 * 13 11 10 39 39 H 1.09002 * 109.46708 * 65.00076 * 14 11 10 40 40 H 1.08998 * 109.46959 * 185.00272 * 14 11 10 41 41 H 1.00902 * 111.00476 * 56.04917 * 15 14 11 42 42 H 1.08998 * 109.47329 * 300.00203 * 16 15 14 43 43 H 1.09000 * 109.47305 * 60.00197 * 16 15 14 44 44 H 0.97001 * 119.99781 * 359.97438 * 19 17 16 45 45 H 0.97003 * 119.99929 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3781 2.1002 -1.1440 5 6 2.8034 3.3545 -0.9527 6 16 2.7926 3.7563 0.7055 7 6 2.1890 2.1622 1.1372 8 6 1.9057 1.7003 2.4991 9 8 1.4898 0.5718 2.6848 10 7 2.1058 2.5255 3.5458 11 6 1.8221 2.0641 4.9070 12 1 2.0670 1.0052 4.9902 13 6 0.3381 2.2701 5.2165 14 6 2.6663 2.8625 5.9025 15 7 4.0846 2.7614 5.5333 16 6 4.9272 3.5180 6.4690 17 6 6.3719 3.3907 6.0595 18 8 6.6702 2.7346 5.0839 19 7 7.3325 4.0059 6.7773 20 6 8.6469 3.8905 6.4045 21 1 8.9124 3.3063 5.5359 22 6 9.6372 4.5243 7.1449 23 7 9.3141 5.2347 8.2021 24 14 11.4280 4.3665 6.6374 25 1 11.6034 4.9080 5.2658 26 1 12.2798 5.1308 7.5835 27 1 11.8243 2.9355 6.6590 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 2.3115 1.6543 -2.1253 34 1 3.1130 4.0230 -1.7424 35 1 2.4369 3.4252 3.3978 36 1 -0.2634 1.7013 4.5073 37 1 0.1269 1.9263 6.2292 38 1 0.0932 3.3290 5.1334 39 1 2.3593 3.9081 5.8826 40 1 2.5224 2.4604 6.9054 41 1 4.2339 3.0681 4.5837 42 1 4.6357 4.5682 6.4527 43 1 4.7990 3.1210 7.4760 44 1 7.0939 4.5309 7.5573 45 1 10.0055 5.6775 8.7188 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715962296.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:16 Heat of formation + Delta-G solvation = -72.861753 kcal Electronic energy + Delta-G solvation = -26616.628028 eV Core-core repulsion = 22759.311590 eV Total energy + Delta-G solvation = -3857.316437 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.12003 -40.15779 -39.17206 -37.69850 -36.03253 -35.12101 -33.66736 -33.26648 -32.49932 -29.97785 -28.98296 -26.74954 -26.34291 -24.67909 -23.42445 -23.09704 -21.68187 -21.11826 -20.08919 -19.82372 -19.15081 -17.90167 -17.31319 -17.03488 -16.73491 -16.39971 -16.32931 -15.99273 -15.82748 -15.38783 -15.16037 -15.02844 -14.79201 -14.55159 -14.33977 -14.04506 -13.93323 -13.54713 -13.38567 -13.25633 -13.09956 -13.03973 -12.85427 -12.80167 -12.67562 -12.43527 -12.40257 -12.13036 -12.00120 -11.96209 -11.66272 -11.50727 -10.92479 -10.38528 -10.22009 -10.01796 -9.74303 -9.41504 -9.34775 -8.46887 -5.95475 -0.47412 0.51400 0.93252 1.39253 1.41071 1.41389 1.52075 2.05130 2.07204 2.19727 2.28799 2.87992 3.20481 3.48477 3.74577 3.88550 3.90031 4.16297 4.17512 4.26324 4.31056 4.36860 4.46358 4.49467 4.53177 4.58289 4.66387 4.72263 4.75797 4.77440 4.87636 5.05343 5.06724 5.10912 5.26026 5.30625 5.39365 5.40504 5.48744 5.53358 5.85762 6.08042 6.32425 6.40130 6.60231 7.12558 7.12635 7.56204 8.12027 8.70187 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013238 B = 0.002519 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.683356 B =11114.088082 C =12398.383968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.073 4.073 3 C -0.025 4.025 4 C -0.157 4.157 5 C -0.217 4.217 6 S 0.210 5.790 7 C -0.305 4.305 8 C 0.590 3.410 9 O -0.556 6.556 10 N -0.715 5.715 11 C 0.147 3.853 12 H 0.071 0.929 13 C -0.151 4.151 14 C 0.055 3.945 15 N -0.688 5.688 16 C 0.065 3.935 17 C 0.435 3.565 18 O -0.625 6.625 19 N -0.572 5.572 20 C -0.334 4.334 21 H 0.077 0.923 22 C -0.012 4.012 23 N -0.919 5.919 24 Si 0.991 3.009 25 H -0.271 1.271 26 H -0.269 1.269 27 H -0.274 1.274 28 H 0.066 0.934 29 H 0.036 0.964 30 H 0.064 0.936 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.168 0.832 34 H 0.198 0.802 35 H 0.400 0.600 36 H 0.047 0.953 37 H 0.086 0.914 38 H 0.072 0.928 39 H 0.059 0.941 40 H 0.104 0.896 41 H 0.340 0.660 42 H 0.074 0.926 43 H 0.108 0.892 44 H 0.397 0.603 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.409 0.240 -13.242 24.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.113 4.113 3 C -0.041 4.041 4 C -0.188 4.188 5 C -0.355 4.355 6 S 0.479 5.521 7 C -0.425 4.425 8 C 0.378 3.622 9 O -0.436 6.436 10 N -0.366 5.366 11 C 0.043 3.957 12 H 0.089 0.911 13 C -0.210 4.210 14 C -0.074 4.074 15 N -0.321 5.321 16 C -0.068 4.068 17 C 0.223 3.777 18 O -0.511 6.511 19 N -0.209 5.209 20 C -0.464 4.464 21 H 0.095 0.905 22 C -0.212 4.212 23 N -0.560 5.560 24 Si 0.815 3.185 25 H -0.196 1.196 26 H -0.194 1.194 27 H -0.199 1.199 28 H 0.085 0.915 29 H 0.055 0.945 30 H 0.083 0.917 31 H 0.106 0.894 32 H 0.085 0.915 33 H 0.186 0.814 34 H 0.215 0.785 35 H 0.235 0.765 36 H 0.066 0.934 37 H 0.104 0.896 38 H 0.091 0.909 39 H 0.077 0.923 40 H 0.122 0.878 41 H 0.159 0.841 42 H 0.091 0.909 43 H 0.126 0.874 44 H 0.231 0.769 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -19.893 -0.114 -12.417 23.450 hybrid contribution 0.688 0.196 -0.872 1.129 sum -19.205 0.082 -13.289 23.355 Atomic orbital electron populations 1.21526 0.93653 1.02149 1.01233 1.20409 0.97037 0.90592 1.03220 1.19804 0.95676 0.97587 0.91054 1.20129 1.04160 0.94416 1.00068 1.25669 1.06296 1.01669 1.01837 1.82989 1.59355 1.09835 0.99878 1.24486 1.19189 1.01694 0.97176 1.17131 0.76911 0.84580 0.83612 1.90750 1.47398 1.19862 1.85629 1.45883 1.67517 1.16697 1.06543 1.21055 0.95566 0.99436 0.79634 0.91062 1.22063 0.93302 1.02796 1.02813 1.22398 0.85702 0.99547 0.99755 1.60001 1.05628 1.60378 1.06069 1.21566 0.88843 0.98067 0.98276 1.20936 0.88703 0.82923 0.85154 1.90507 1.84105 1.45634 1.30899 1.41914 1.05841 1.45702 1.27457 1.19608 0.83274 1.31121 1.12402 0.90511 1.26010 1.04098 0.95585 0.95458 1.69658 1.36108 1.32670 1.17546 0.85020 0.76815 0.78460 0.78248 1.19617 1.19377 1.19932 0.91545 0.94457 0.91743 0.89369 0.91487 0.81449 0.78465 0.76453 0.93392 0.89554 0.90925 0.92300 0.87812 0.84060 0.90869 0.87437 0.76876 0.91263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 9.78 71.98 0.70 -1.79 16 2 C -0.07 -1.60 5.50 29.85 0.16 -1.44 16 3 C -0.03 -0.57 5.16 -20.42 -0.11 -0.67 16 4 C -0.16 -2.70 9.96 21.09 0.21 -2.49 16 5 C -0.22 -3.37 10.92 66.82 0.73 -2.64 16 6 S 0.21 3.94 22.16 -56.49 -1.25 2.69 16 7 C -0.31 -7.57 6.45 24.08 0.16 -7.41 16 8 C 0.59 16.72 7.74 86.42 0.67 17.38 16 9 O -0.56 -18.66 13.39 -4.34 -0.06 -18.72 16 10 N -0.72 -17.04 4.35 -446.61 -1.94 -18.99 16 11 C 0.15 3.32 2.88 44.99 0.13 3.45 16 12 H 0.07 2.05 7.58 -2.39 -0.02 2.03 16 13 C -0.15 -2.61 9.48 71.98 0.68 -1.93 16 14 C 0.05 1.16 5.30 86.31 0.46 1.62 16 15 N -0.69 -21.29 6.12 -517.93 -3.17 -24.46 16 16 C 0.06 2.12 6.17 85.56 0.53 2.65 16 17 C 0.44 20.61 7.82 87.66 0.69 21.30 16 18 O -0.62 -35.03 15.78 -3.08 -0.05 -35.08 16 19 N -0.57 -29.14 5.29 -306.98 -1.62 -30.77 16 20 C -0.33 -19.02 9.68 84.04 0.81 -18.20 16 21 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 22 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 23 N -0.92 -49.25 13.05 21.66 0.28 -48.97 16 24 Si 0.99 42.92 29.55 68.60 2.03 44.95 16 25 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 26 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 27 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 28 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.04 0.88 7.62 -2.39 -0.02 0.86 16 30 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.09 1.51 8.12 -2.39 -0.02 1.49 16 32 H 0.07 1.87 6.32 -2.39 -0.02 1.86 16 33 H 0.17 1.98 8.06 -2.91 -0.02 1.95 16 34 H 0.20 1.81 8.06 -2.91 -0.02 1.79 16 35 H 0.40 8.25 7.27 -92.70 -0.67 7.58 16 36 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 37 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 38 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.34 11.22 7.28 -89.69 -0.65 10.57 16 42 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.11 3.15 8.14 -2.39 -0.02 3.13 16 44 H 0.40 19.05 7.90 -92.71 -0.73 18.32 16 45 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 Total: -1.00 -73.78 390.29 -0.51 -74.29 By element: Atomic # 1 Polarization: 46.38 SS G_CDS: -1.02 Total: 45.35 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: 6.29 Total: 9.68 kcal Atomic # 7 Polarization: -116.73 SS G_CDS: -6.45 Total: -123.18 kcal Atomic # 8 Polarization: -53.69 SS G_CDS: -0.11 Total: -53.79 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Atomic # 16 Polarization: 3.94 SS G_CDS: -1.25 Total: 2.69 kcal Total: -73.78 -0.51 -74.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715962296.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.431 kcal (2) G-P(sol) polarization free energy of solvation -73.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds