Wall clock time and date at job start Tue Mar 31 2020 22:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29031 * 124.91401 * 2 1 4 4 C 1.31790 * 117.12072 * 180.22754 * 3 2 1 5 5 C 1.50704 * 122.74680 * 179.74833 * 4 3 2 6 6 C 1.52995 * 109.47388 * 304.71510 * 5 4 3 7 7 C 1.50691 * 109.47297 * 179.97438 * 6 5 4 8 8 O 1.21284 * 120.00225 * 0.02562 * 7 6 5 9 9 N 1.34778 * 120.00375 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00264 * 180.02562 * 9 7 6 11 11 C 1.52995 * 109.47186 * 179.97438 * 10 9 7 12 12 H 1.09004 * 109.70929 * 59.24811 * 11 10 9 13 13 C 1.53303 * 109.68216 * 179.78247 * 11 10 9 14 14 O 1.42965 * 109.22131 * 172.02454 * 13 11 10 15 15 C 1.42964 * 114.16555 * 297.42254 * 14 13 11 16 16 C 1.53287 * 109.22508 * 62.58277 * 15 14 13 17 17 N 1.47153 * 108.41628 * 307.67989 * 16 15 14 18 18 C 1.36944 * 120.97960 * 230.54461 * 17 16 15 19 19 H 1.08001 * 119.99841 * 148.99403 * 18 17 16 20 20 C 1.38805 * 119.99757 * 328.98624 * 18 17 16 21 21 N 1.31619 * 120.00724 * 349.09887 * 20 18 17 22 22 Si 1.86804 * 119.99631 * 169.09385 * 20 18 17 23 23 H 1.48502 * 109.47246 * 90.00380 * 22 20 18 24 24 H 1.48507 * 109.47177 * 210.00186 * 22 20 18 25 25 H 1.48500 * 109.47225 * 330.00386 * 22 20 18 26 26 C 1.33632 * 114.49896 * 359.48932 * 4 3 2 27 27 S 1.70978 * 124.91823 * 179.69903 * 2 1 3 28 28 H 1.09001 * 109.46735 * 180.33259 * 1 2 3 29 29 H 1.08999 * 109.46708 * 300.32429 * 1 2 3 30 30 H 1.08999 * 109.47496 * 60.32630 * 1 2 3 31 31 H 1.08997 * 109.46800 * 184.71119 * 5 4 3 32 32 H 1.09006 * 109.46503 * 64.71441 * 5 4 3 33 33 H 1.09007 * 109.47396 * 59.99947 * 6 5 4 34 34 H 1.09003 * 109.47405 * 299.99983 * 6 5 4 35 35 H 0.96998 * 119.99659 * 0.02562 * 9 7 6 36 36 H 1.08995 * 109.47555 * 59.99710 * 10 9 7 37 37 H 1.09003 * 109.46740 * 300.00058 * 10 9 7 38 38 H 1.08999 * 109.50923 * 52.10194 * 13 11 10 39 39 H 1.08997 * 109.51095 * 291.95058 * 13 11 10 40 40 H 1.09003 * 109.51045 * 302.65629 * 15 14 13 41 41 H 1.08997 * 109.54852 * 182.53019 * 15 14 13 42 42 H 1.09004 * 109.68578 * 67.41922 * 16 15 14 43 43 H 1.09002 * 109.68518 * 187.93749 * 16 15 14 44 44 H 0.97000 * 120.00480 * 179.97438 * 21 20 18 45 45 H 1.08004 * 126.03417 * 180.26755 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0581 0.0000 4 6 3.5512 0.8794 -0.0047 5 6 4.5307 2.0246 -0.0108 6 6 4.2334 2.9437 -1.1973 7 6 5.2125 4.0892 -1.2030 8 8 6.0646 4.1631 -0.3431 9 7 5.1420 5.0313 -2.1644 10 6 6.0942 6.1446 -2.1703 11 6 5.7976 7.0630 -3.3574 12 1 4.7793 7.4446 -3.2815 13 6 6.7881 8.2331 -3.3651 14 8 6.6252 8.9798 -4.5733 15 6 6.9112 8.2390 -5.7621 16 6 5.9271 7.0695 -5.8772 17 7 5.9537 6.3136 -4.6149 18 6 6.1192 4.9542 -4.6107 19 1 6.6208 4.4739 -3.7836 20 6 5.6421 4.1937 -5.6693 21 7 4.8488 4.7392 -6.5667 22 14 6.1263 2.3958 -5.8204 23 1 5.1395 1.5549 -5.0962 24 1 6.1495 2.0082 -7.2538 25 1 7.4746 2.1951 -5.2314 26 6 3.9354 -0.4005 0.0020 27 16 2.4857 -1.4019 0.0074 28 1 -0.3633 -1.0277 0.0060 29 1 -0.3633 0.5189 0.8871 30 1 -0.3634 0.5087 -0.8929 31 1 5.5449 1.6348 -0.0983 32 1 4.4368 2.5880 0.9177 33 1 3.2192 3.3335 -1.1097 34 1 4.3273 2.3804 -2.1257 35 1 4.4608 4.9720 -2.8523 36 1 7.1084 5.7549 -2.2574 37 1 6.0000 6.7081 -1.2420 38 1 7.8064 7.8483 -3.3093 39 1 6.5949 8.8793 -2.5088 40 1 7.9300 7.8543 -5.7151 41 1 6.8073 8.8891 -6.6308 42 1 4.9218 7.4516 -6.0551 43 1 6.2237 6.4196 -6.7005 44 1 4.5157 4.2078 -7.3067 45 1 4.9546 -0.7580 0.0039 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717140907.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:33 Heat of formation + Delta-G solvation = -17.978926 kcal Electronic energy + Delta-G solvation = -27507.234629 eV Core-core repulsion = 23652.298090 eV Total energy + Delta-G solvation = -3854.936539 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.10531 -39.22576 -38.28523 -35.35888 -33.87178 -33.53103 -31.71559 -31.11214 -30.38777 -28.44912 -27.25010 -26.12903 -24.37570 -23.45918 -22.46389 -21.57280 -19.84831 -19.77825 -19.48633 -17.57004 -17.07366 -16.23577 -15.97228 -15.70751 -15.38101 -15.14675 -14.85590 -14.74194 -14.54499 -14.09262 -13.96087 -13.72991 -13.44706 -13.21405 -13.11382 -12.92381 -12.57885 -12.53845 -12.39087 -11.85397 -11.73003 -11.53649 -11.43311 -11.08868 -10.89515 -10.85653 -10.73167 -10.41791 -10.28169 -10.05417 -9.73066 -9.67340 -9.51147 -9.39628 -8.97939 -8.75374 -8.68127 -8.25258 -6.74326 -5.92297 -3.41615 0.60649 1.24219 1.60230 2.68950 3.21108 3.25650 3.34153 3.36709 3.82534 3.95452 4.32526 4.52952 4.78196 5.03838 5.08750 5.14287 5.16608 5.22764 5.25418 5.30871 5.44587 5.58350 5.60612 5.63670 5.72795 5.82354 5.90016 6.02646 6.04431 6.10124 6.14964 6.18445 6.24092 6.29336 6.32875 6.52192 6.76263 7.06427 7.14194 7.47916 7.66621 7.68832 7.86071 8.23401 8.28455 8.85514 9.04223 9.64658 10.23995 11.14362 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014211 B = 0.002982 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.879341 B = 9386.349128 C =10367.878924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.050 3.950 3 N -0.467 5.467 4 C 0.079 3.921 5 C -0.026 4.026 6 C -0.133 4.133 7 C 0.510 3.490 8 O -0.567 6.567 9 N -0.695 5.695 10 C 0.136 3.864 11 C 0.124 3.876 12 H 0.041 0.959 13 C 0.056 3.944 14 O -0.393 6.393 15 C 0.035 3.965 16 C 0.144 3.856 17 N -0.591 5.591 18 C -0.254 4.254 19 H 0.074 0.926 20 C 0.010 3.990 21 N -0.900 5.900 22 Si 0.895 3.105 23 H -0.285 1.285 24 H -0.289 1.289 25 H -0.279 1.279 26 C -0.259 4.259 27 S 0.101 5.899 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.415 0.585 36 H 0.066 0.934 37 H 0.058 0.942 38 H 0.047 0.953 39 H 0.083 0.917 40 H 0.040 0.960 41 H 0.079 0.921 42 H 0.029 0.971 43 H 0.092 0.908 44 H 0.255 0.745 45 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.635 -7.360 10.405 13.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.228 4.228 3 N -0.183 5.183 4 C -0.053 4.053 5 C -0.066 4.066 6 C -0.173 4.173 7 C 0.296 3.704 8 O -0.448 6.448 9 N -0.346 5.346 10 C 0.011 3.989 11 C 0.017 3.983 12 H 0.059 0.941 13 C -0.023 4.023 14 O -0.311 6.311 15 C -0.043 4.043 16 C 0.018 3.982 17 N -0.317 5.317 18 C -0.383 4.383 19 H 0.091 0.909 20 C -0.190 4.190 21 N -0.544 5.544 22 Si 0.724 3.276 23 H -0.212 1.212 24 H -0.215 1.215 25 H -0.204 1.204 26 C -0.398 4.398 27 S 0.355 5.645 28 H 0.096 0.904 29 H 0.106 0.894 30 H 0.108 0.892 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.116 0.884 34 H 0.110 0.890 35 H 0.253 0.747 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.065 0.935 39 H 0.101 0.899 40 H 0.059 0.941 41 H 0.098 0.902 42 H 0.047 0.953 43 H 0.110 0.890 44 H 0.065 0.935 45 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -5.640 -7.767 10.840 14.479 hybrid contribution 0.632 -0.705 -0.747 1.206 sum -5.008 -8.472 10.093 14.097 Atomic orbital electron populations 1.20428 0.85186 1.03386 1.04602 1.27073 1.01756 0.90860 1.03114 1.66055 1.04596 1.31470 1.16148 1.20384 0.90057 0.94409 1.00416 1.19924 0.95580 0.91795 0.99333 1.21520 1.00149 0.95565 1.00070 1.20469 0.85194 0.83427 0.81280 1.90629 1.38106 1.77393 1.38677 1.46006 1.34872 1.24700 1.29029 1.21145 0.93715 0.87411 0.96587 1.21447 0.97101 0.91861 0.87851 0.94122 1.22867 0.98489 0.93835 0.87104 1.87800 1.90437 1.38458 1.14430 1.23348 0.99146 0.95392 0.86418 1.21413 0.95448 0.90958 0.90350 1.44111 1.85268 1.03253 0.99076 1.19222 1.30768 0.81615 1.06713 0.90894 1.25127 0.97131 0.97603 0.99135 1.69974 1.33741 1.35688 1.14963 0.86418 0.78604 0.85362 0.77214 1.21175 1.21470 1.20400 1.26825 1.03056 0.95660 1.14238 1.83881 0.98360 1.13238 1.69022 0.90380 0.89401 0.89222 0.89498 0.89396 0.88408 0.88968 0.74720 0.91567 0.92400 0.93516 0.89915 0.94132 0.90243 0.95292 0.88962 0.93457 0.80527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.58 10.47 36.01 0.38 -0.20 16 2 C 0.05 0.57 7.39 -13.45 -0.10 0.47 16 3 N -0.47 -6.50 10.35 -8.05 -0.08 -6.59 16 4 C 0.08 1.08 6.07 -84.22 -0.51 0.57 16 5 C -0.03 -0.37 5.00 -27.88 -0.14 -0.51 16 6 C -0.13 -2.08 5.60 -27.89 -0.16 -2.24 16 7 C 0.51 9.36 7.83 -10.99 -0.09 9.27 16 8 O -0.57 -11.70 15.98 5.55 0.09 -11.61 16 9 N -0.70 -13.07 3.80 -60.30 -0.23 -13.30 16 10 C 0.14 2.52 4.44 -4.04 -0.02 2.51 16 11 C 0.12 2.44 3.20 -67.38 -0.22 2.22 16 12 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 13 C 0.06 1.00 6.29 37.31 0.23 1.23 16 14 O -0.39 -7.66 10.74 -35.23 -0.38 -8.04 16 15 C 0.03 0.67 6.98 37.31 0.26 0.93 16 16 C 0.14 3.26 5.38 -3.54 -0.02 3.24 16 17 N -0.59 -13.59 3.04 -164.25 -0.50 -14.09 16 18 C -0.25 -6.25 7.12 -15.06 -0.11 -6.35 16 19 H 0.07 1.83 5.81 -52.49 -0.31 1.53 16 20 C 0.01 0.24 5.06 -17.43 -0.09 0.15 16 21 N -0.90 -24.14 11.13 55.49 0.62 -23.52 16 22 Si 0.89 20.66 29.57 -169.99 -5.03 15.64 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 C -0.26 -3.07 11.07 29.12 0.32 -2.74 16 27 S 0.10 1.02 23.17 -107.50 -2.49 -1.47 16 28 H 0.08 0.42 8.12 -51.93 -0.42 0.00 16 29 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.09 1.21 7.99 -51.93 -0.41 0.80 16 32 H 0.09 1.27 8.10 -51.93 -0.42 0.85 16 33 H 0.10 1.46 8.08 -51.93 -0.42 1.04 16 34 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 35 H 0.42 8.19 7.38 -40.82 -0.30 7.89 16 36 H 0.07 1.34 7.53 -51.93 -0.39 0.95 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 42 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.09 2.30 6.32 -51.93 -0.33 1.97 16 44 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 45 H 0.18 1.73 8.06 -52.48 -0.42 1.31 16 LS Contribution 378.11 15.07 5.70 5.70 Total: -1.00 -30.02 378.11 -9.34 -39.36 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -6.79 Total: 9.37 kcal Atomic # 6 Polarization: 8.80 SS G_CDS: -0.25 Total: 8.56 kcal Atomic # 7 Polarization: -57.30 SS G_CDS: -0.19 Total: -57.50 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -0.29 Total: -19.65 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.03 Total: 15.64 kcal Atomic # 16 Polarization: 1.02 SS G_CDS: -2.49 Total: -1.47 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.02 -9.34 -39.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717140907.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.376 kcal (2) G-P(sol) polarization free energy of solvation -30.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds