Wall clock time and date at job start Tue Mar 31 2020 22:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29031 * 124.91401 * 2 1 4 4 C 1.31790 * 117.12072 * 180.22754 * 3 2 1 5 5 C 1.50704 * 122.74680 * 179.74833 * 4 3 2 6 6 C 1.52995 * 109.47388 * 304.71510 * 5 4 3 7 7 C 1.50691 * 109.47297 * 179.97438 * 6 5 4 8 8 O 1.21284 * 120.00225 * 0.02562 * 7 6 5 9 9 N 1.34778 * 120.00375 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00264 * 180.02562 * 9 7 6 11 11 C 1.52995 * 109.47186 * 179.97438 * 10 9 7 12 12 H 1.09004 * 109.70929 * 59.24811 * 11 10 9 13 13 C 1.53303 * 109.68216 * 179.78247 * 11 10 9 14 14 O 1.42965 * 109.22131 * 172.02454 * 13 11 10 15 15 C 1.42964 * 114.16555 * 297.42254 * 14 13 11 16 16 C 1.53287 * 109.22508 * 62.58277 * 15 14 13 17 17 N 1.47153 * 108.41628 * 307.67989 * 16 15 14 18 18 C 1.36944 * 120.97960 * 230.54461 * 17 16 15 19 19 H 1.08001 * 119.99841 * 148.99403 * 18 17 16 20 20 C 1.38805 * 119.99757 * 328.98624 * 18 17 16 21 21 N 1.31619 * 120.00724 * 349.09887 * 20 18 17 22 22 Si 1.86804 * 119.99631 * 169.09385 * 20 18 17 23 23 H 1.48502 * 109.47246 * 90.00380 * 22 20 18 24 24 H 1.48507 * 109.47177 * 210.00186 * 22 20 18 25 25 H 1.48500 * 109.47225 * 330.00386 * 22 20 18 26 26 C 1.33632 * 114.49896 * 359.48932 * 4 3 2 27 27 S 1.70978 * 124.91823 * 179.69903 * 2 1 3 28 28 H 1.09001 * 109.46735 * 180.33259 * 1 2 3 29 29 H 1.08999 * 109.46708 * 300.32429 * 1 2 3 30 30 H 1.08999 * 109.47496 * 60.32630 * 1 2 3 31 31 H 1.08997 * 109.46800 * 184.71119 * 5 4 3 32 32 H 1.09006 * 109.46503 * 64.71441 * 5 4 3 33 33 H 1.09007 * 109.47396 * 59.99947 * 6 5 4 34 34 H 1.09003 * 109.47405 * 299.99983 * 6 5 4 35 35 H 0.96998 * 119.99659 * 0.02562 * 9 7 6 36 36 H 1.08995 * 109.47555 * 59.99710 * 10 9 7 37 37 H 1.09003 * 109.46740 * 300.00058 * 10 9 7 38 38 H 1.08999 * 109.50923 * 52.10194 * 13 11 10 39 39 H 1.08997 * 109.51095 * 291.95058 * 13 11 10 40 40 H 1.09003 * 109.51045 * 302.65629 * 15 14 13 41 41 H 1.08997 * 109.54852 * 182.53019 * 15 14 13 42 42 H 1.09004 * 109.68578 * 67.41922 * 16 15 14 43 43 H 1.09002 * 109.68518 * 187.93749 * 16 15 14 44 44 H 0.97000 * 120.00480 * 179.97438 * 21 20 18 45 45 H 1.08004 * 126.03417 * 180.26755 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0581 0.0000 4 6 3.5512 0.8794 -0.0047 5 6 4.5307 2.0246 -0.0108 6 6 4.2334 2.9437 -1.1973 7 6 5.2125 4.0892 -1.2030 8 8 6.0646 4.1631 -0.3431 9 7 5.1420 5.0313 -2.1644 10 6 6.0942 6.1446 -2.1703 11 6 5.7976 7.0630 -3.3574 12 1 4.7793 7.4446 -3.2815 13 6 6.7881 8.2331 -3.3651 14 8 6.6252 8.9798 -4.5733 15 6 6.9112 8.2390 -5.7621 16 6 5.9271 7.0695 -5.8772 17 7 5.9537 6.3136 -4.6149 18 6 6.1192 4.9542 -4.6107 19 1 6.6208 4.4739 -3.7836 20 6 5.6421 4.1937 -5.6693 21 7 4.8488 4.7392 -6.5667 22 14 6.1263 2.3958 -5.8204 23 1 5.1395 1.5549 -5.0962 24 1 6.1495 2.0082 -7.2538 25 1 7.4746 2.1951 -5.2314 26 6 3.9354 -0.4005 0.0020 27 16 2.4857 -1.4019 0.0074 28 1 -0.3633 -1.0277 0.0060 29 1 -0.3633 0.5189 0.8871 30 1 -0.3634 0.5087 -0.8929 31 1 5.5449 1.6348 -0.0983 32 1 4.4368 2.5880 0.9177 33 1 3.2192 3.3335 -1.1097 34 1 4.3273 2.3804 -2.1257 35 1 4.4608 4.9720 -2.8523 36 1 7.1084 5.7549 -2.2574 37 1 6.0000 6.7081 -1.2420 38 1 7.8064 7.8483 -3.3093 39 1 6.5949 8.8793 -2.5088 40 1 7.9300 7.8543 -5.7151 41 1 6.8073 8.8891 -6.6308 42 1 4.9218 7.4516 -6.0551 43 1 6.2237 6.4196 -6.7005 44 1 4.5157 4.2078 -7.3067 45 1 4.9546 -0.7580 0.0039 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717140907.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:32 Heat of formation + Delta-G solvation = -37.288672 kcal Electronic energy + Delta-G solvation = -27508.071962 eV Core-core repulsion = 23652.298090 eV Total energy + Delta-G solvation = -3855.773873 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.16241 -40.64743 -39.84185 -36.96909 -35.32165 -34.87177 -33.31101 -32.37988 -31.89810 -29.33075 -28.99076 -27.51189 -25.66711 -25.21424 -23.55638 -23.04738 -21.46402 -21.05372 -20.67457 -18.77077 -18.50910 -17.73111 -17.61568 -17.23453 -16.61016 -16.38822 -16.25056 -16.13995 -15.91468 -15.68998 -15.40995 -15.01242 -14.71135 -14.59560 -14.44567 -14.11676 -13.99066 -13.62478 -13.39385 -13.12855 -13.03519 -12.91403 -12.80921 -12.71928 -12.49057 -12.46212 -12.16637 -12.01147 -12.00716 -11.85421 -11.30798 -10.94621 -10.62474 -10.60961 -10.55463 -10.37156 -9.84174 -9.64340 -8.62387 -7.87472 -5.38085 -0.25915 0.42322 0.72939 1.38891 1.44589 1.50391 1.70993 1.75471 2.37897 2.46740 3.03326 3.12088 3.29004 3.44073 3.78552 3.96548 4.03826 4.08737 4.15195 4.24054 4.31687 4.35961 4.47392 4.49883 4.57483 4.61817 4.64538 4.66464 4.66759 4.67826 4.77245 4.92228 5.00468 5.01601 5.07045 5.11646 5.26611 5.30419 5.58148 5.64481 5.69311 6.29412 6.37055 6.70189 6.78218 7.10510 7.33662 7.76306 8.32686 9.17163 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014211 B = 0.002982 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.879341 B = 9386.349128 C =10367.878924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.038 3.962 3 N -0.502 5.502 4 C 0.056 3.944 5 C -0.018 4.018 6 C -0.122 4.122 7 C 0.510 3.490 8 O -0.589 6.589 9 N -0.698 5.698 10 C 0.142 3.858 11 C 0.125 3.875 12 H 0.036 0.964 13 C 0.058 3.942 14 O -0.398 6.398 15 C 0.046 3.954 16 C 0.149 3.851 17 N -0.606 5.606 18 C -0.241 4.241 19 H 0.069 0.931 20 C -0.032 4.032 21 N -0.927 5.927 22 Si 0.942 3.058 23 H -0.281 1.281 24 H -0.295 1.295 25 H -0.280 1.280 26 C -0.270 4.270 27 S 0.151 5.849 28 H 0.102 0.898 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.103 0.897 34 H 0.085 0.915 35 H 0.410 0.590 36 H 0.050 0.950 37 H 0.079 0.921 38 H 0.049 0.951 39 H 0.118 0.882 40 H 0.043 0.957 41 H 0.104 0.896 42 H 0.006 0.994 43 H 0.066 0.934 44 H 0.250 0.750 45 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.803 -7.952 11.490 15.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.240 4.240 3 N -0.218 5.218 4 C -0.075 4.075 5 C -0.059 4.059 6 C -0.162 4.162 7 C 0.298 3.702 8 O -0.471 6.471 9 N -0.348 5.348 10 C 0.017 3.983 11 C 0.019 3.981 12 H 0.054 0.946 13 C -0.021 4.021 14 O -0.316 6.316 15 C -0.031 4.031 16 C 0.023 3.977 17 N -0.332 5.332 18 C -0.371 4.371 19 H 0.087 0.913 20 C -0.229 4.229 21 N -0.573 5.573 22 Si 0.772 3.228 23 H -0.208 1.208 24 H -0.222 1.222 25 H -0.206 1.206 26 C -0.409 4.409 27 S 0.406 5.594 28 H 0.121 0.879 29 H 0.114 0.886 30 H 0.108 0.892 31 H 0.105 0.895 32 H 0.100 0.900 33 H 0.122 0.878 34 H 0.104 0.896 35 H 0.247 0.753 36 H 0.068 0.932 37 H 0.098 0.902 38 H 0.068 0.932 39 H 0.136 0.864 40 H 0.062 0.938 41 H 0.122 0.878 42 H 0.024 0.976 43 H 0.084 0.916 44 H 0.059 0.941 45 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -5.807 -8.354 11.947 15.692 hybrid contribution 0.657 -0.541 -1.027 1.334 sum -5.149 -8.895 10.920 14.996 Atomic orbital electron populations 1.20600 0.82904 1.05182 1.04969 1.27703 1.03303 0.91022 1.01936 1.66053 1.04874 1.33079 1.17811 1.20298 0.90198 0.94731 1.02280 1.19790 0.95990 0.91911 0.98197 1.21446 0.99585 0.94690 1.00481 1.20869 0.85140 0.83615 0.80579 1.90612 1.39128 1.77939 1.39460 1.46065 1.34714 1.25069 1.28979 1.21105 0.92730 0.87335 0.97082 1.21573 0.97502 0.92404 0.86613 0.94623 1.22991 0.97898 0.93575 0.87626 1.87804 1.90403 1.38607 1.14797 1.23212 0.97919 0.94476 0.87539 1.21239 0.95132 0.91631 0.89653 1.44323 1.85311 1.03129 1.00394 1.19274 1.29301 0.82517 1.05967 0.91326 1.25601 0.97737 1.00136 0.99396 1.70096 1.35260 1.36429 1.15495 0.85663 0.78117 0.82520 0.76541 1.20777 1.22153 1.20591 1.27127 1.04824 0.95728 1.13232 1.83665 0.96489 1.11550 1.67717 0.87892 0.88600 0.89152 0.89539 0.90039 0.87830 0.89630 0.75292 0.93154 0.90248 0.93231 0.86442 0.93816 0.87761 0.97625 0.91578 0.94098 0.79013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.01 10.47 71.24 0.75 -0.27 16 2 C 0.04 0.80 7.39 88.52 0.65 1.46 16 3 N -0.50 -13.64 10.35 -179.39 -1.86 -15.50 16 4 C 0.06 1.51 6.07 41.52 0.25 1.76 16 5 C -0.02 -0.53 5.00 29.85 0.15 -0.38 16 6 C -0.12 -3.82 5.60 29.84 0.17 -3.65 16 7 C 0.51 18.65 7.83 87.65 0.69 19.33 16 8 O -0.59 -24.11 15.98 -3.04 -0.05 -24.15 16 9 N -0.70 -26.11 3.80 -463.07 -1.76 -27.87 16 10 C 0.14 5.13 4.44 86.38 0.38 5.52 16 11 C 0.13 4.78 3.20 44.95 0.14 4.92 16 12 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 13 C 0.06 1.91 6.29 72.08 0.45 2.36 16 14 O -0.40 -14.64 10.74 -148.98 -1.60 -16.24 16 15 C 0.05 1.72 6.98 72.08 0.50 2.23 16 16 C 0.15 6.81 5.38 86.35 0.46 7.27 16 17 N -0.61 -27.79 3.04 -673.55 -2.04 -29.84 16 18 C -0.24 -11.88 7.12 84.03 0.60 -11.29 16 19 H 0.07 3.44 5.81 -2.91 -0.02 3.43 16 20 C -0.03 -1.66 5.06 84.86 0.43 -1.23 16 21 N -0.93 -50.72 11.13 21.65 0.24 -50.48 16 22 Si 0.94 42.81 29.57 68.60 2.03 44.83 16 23 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 24 H -0.30 -13.63 7.11 99.48 0.71 -12.92 16 25 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 26 C -0.27 -6.05 11.07 66.77 0.74 -5.31 16 27 S 0.15 2.73 23.17 -56.49 -1.31 1.42 16 28 H 0.10 0.81 8.12 -2.39 -0.02 0.79 16 29 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.09 2.41 7.99 -2.39 -0.02 2.39 16 32 H 0.08 2.38 8.10 -2.38 -0.02 2.36 16 33 H 0.10 3.11 8.08 -2.38 -0.02 3.09 16 34 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 35 H 0.41 16.28 7.38 -92.71 -0.68 15.59 16 36 H 0.05 2.00 7.53 -2.39 -0.02 1.98 16 37 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 38 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.12 3.11 8.14 -2.39 -0.02 3.09 16 40 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 42 H 0.01 0.28 8.14 -2.38 -0.02 0.26 16 43 H 0.07 3.36 6.32 -2.39 -0.02 3.35 16 44 H 0.25 13.46 8.31 -92.71 -0.77 12.69 16 45 H 0.19 3.48 8.06 -2.91 -0.02 3.45 16 Total: -1.00 -64.11 378.11 0.34 -63.77 By element: Atomic # 1 Polarization: 31.00 SS G_CDS: 0.32 Total: 31.32 kcal Atomic # 6 Polarization: 16.36 SS G_CDS: 6.37 Total: 22.73 kcal Atomic # 7 Polarization: -118.26 SS G_CDS: -5.42 Total: -123.68 kcal Atomic # 8 Polarization: -38.75 SS G_CDS: -1.65 Total: -40.39 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.83 kcal Atomic # 16 Polarization: 2.73 SS G_CDS: -1.31 Total: 1.42 kcal Total: -64.11 0.34 -63.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717140907.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.480 kcal (2) G-P(sol) polarization free energy of solvation -64.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds