Wall clock time and date at job start Tue Mar 31 2020 22:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30711 * 122.10892 * 2 1 4 4 C 1.30551 * 115.90567 * 179.97438 * 3 2 1 5 5 C 1.47261 * 125.54048 * 180.02562 * 4 3 2 6 6 O 1.21623 * 119.99911 * 320.20097 * 5 4 3 7 7 N 1.34772 * 120.00114 * 140.20333 * 5 4 3 8 8 C 1.46928 * 120.63299 * 354.31743 * 7 5 4 9 9 C 1.53191 * 108.77683 * 233.59246 * 8 7 5 10 10 C 1.53040 * 109.31220 * 305.36448 * 9 8 7 11 11 O 1.42905 * 109.45702 * 301.35984 * 10 9 8 12 12 C 1.52995 * 109.46382 * 181.38733 * 10 9 8 13 13 N 1.46500 * 109.47647 * 184.99822 * 12 10 9 14 14 C 1.36936 * 120.00119 * 180.02562 * 13 12 10 15 15 H 1.08002 * 120.00000 * 359.97438 * 14 13 12 16 16 C 1.38813 * 119.99653 * 180.02562 * 14 13 12 17 17 N 1.31627 * 119.99391 * 179.97438 * 16 14 13 18 18 Si 1.86797 * 120.00187 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.46835 * 90.00577 * 18 16 14 20 20 H 1.48497 * 109.47232 * 210.00156 * 18 16 14 21 21 H 1.48499 * 109.47101 * 330.00461 * 18 16 14 22 22 C 1.53044 * 109.53934 * 61.36480 * 10 9 8 23 23 C 1.46930 * 120.62809 * 174.30175 * 7 5 4 24 24 S 1.76095 * 108.91913 * 0.26023 * 4 3 2 25 25 C 1.34235 * 122.10918 * 179.97438 * 2 1 3 26 26 C 1.50697 * 125.45375 * 0.05306 * 25 2 1 27 27 H 1.08996 * 109.46911 * 90.02664 * 1 2 3 28 28 H 1.09000 * 109.46659 * 210.02325 * 1 2 3 29 29 H 1.08999 * 109.47069 * 330.02343 * 1 2 3 30 30 H 1.08993 * 109.58743 * 113.79795 * 8 7 5 31 31 H 1.09003 * 109.58191 * 353.38008 * 8 7 5 32 32 H 1.09001 * 109.49858 * 185.41225 * 9 8 7 33 33 H 1.09000 * 109.49718 * 65.31428 * 9 8 7 34 34 H 0.96705 * 113.99995 * 180.02562 * 11 10 9 35 35 H 1.09000 * 109.46894 * 305.00219 * 12 10 9 36 36 H 1.09005 * 109.46719 * 64.99541 * 12 10 9 37 37 H 0.96994 * 119.99318 * 359.97438 * 13 12 10 38 38 H 0.96998 * 119.99258 * 179.97438 * 17 16 14 39 39 H 1.08990 * 109.49309 * 58.58866 * 22 10 9 40 40 H 1.09003 * 109.49394 * 178.68259 * 22 10 9 41 41 H 1.09004 * 109.58241 * 246.19139 * 23 7 5 42 42 H 1.08997 * 109.59223 * 6.61989 * 23 7 5 43 43 H 1.09000 * 109.47235 * 90.00538 * 26 25 2 44 44 H 1.08999 * 109.47247 * 210.00613 * 26 25 2 45 45 H 1.09004 * 109.47133 * 330.00096 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2018 1.1072 0.0000 4 6 3.4996 0.9661 0.0005 5 6 4.4801 2.0649 0.0012 6 8 4.2815 3.0575 -0.6729 7 7 5.5975 1.9705 0.7487 8 6 5.7935 0.8366 1.6623 9 6 6.0992 1.3785 3.0622 10 6 7.2901 2.3366 2.9851 11 8 8.4227 1.6465 2.4530 12 6 7.6203 2.8532 4.3868 13 7 8.6809 3.8600 4.2991 14 6 9.1449 4.4667 5.4357 15 1 8.7286 4.2032 6.3968 16 6 10.1495 5.4210 5.3523 17 7 10.5951 6.0045 6.4449 18 14 10.8690 5.8771 3.6899 19 1 10.0942 7.0019 3.1071 20 1 12.2860 6.2875 3.8596 21 1 10.7986 4.7044 2.7816 22 6 6.9394 3.5170 2.0763 23 6 6.6431 2.9993 0.6652 24 16 3.8873 -0.7516 -0.0065 25 6 2.2205 -1.1370 0.0005 26 6 1.6454 -2.5299 0.0000 27 1 -0.3633 -0.0005 -1.0276 28 1 -0.3633 -0.8898 0.5142 29 1 -0.3633 0.8902 0.5135 30 1 6.6286 0.2281 1.3156 31 1 4.8869 0.2323 1.6943 32 1 6.3412 0.5501 3.7281 33 1 5.2282 1.9107 3.4445 34 1 9.2162 2.1938 2.3759 35 1 6.7299 3.3010 4.8281 36 1 7.9568 2.0243 5.0096 37 1 9.0550 4.0962 3.4359 38 1 11.2973 6.6710 6.3866 39 1 6.0605 4.0290 2.4679 40 1 7.7794 4.2107 2.0405 41 1 7.5477 2.5671 0.2372 42 1 6.2973 3.8220 0.0394 43 1 1.5076 -2.8657 -1.0278 44 1 2.3288 -3.2054 0.5144 45 1 0.6836 -2.5261 0.5131 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717325275.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:34 Heat of formation + Delta-G solvation = -20.154979 kcal Electronic energy + Delta-G solvation = -27624.664741 eV Core-core repulsion = 23769.633841 eV Total energy + Delta-G solvation = -3855.030900 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.83725 -40.03724 -38.54606 -35.80281 -34.22538 -33.74695 -32.08945 -31.45594 -30.93723 -30.19561 -27.62400 -26.48455 -25.23482 -23.99698 -23.21970 -21.86544 -20.84665 -19.85907 -18.91236 -18.54884 -18.05111 -17.41560 -16.42710 -15.98229 -15.79500 -15.19169 -14.90317 -14.79880 -14.60309 -14.24247 -14.01014 -13.86928 -13.56503 -13.50466 -13.42078 -13.31794 -13.05767 -12.97062 -12.60895 -12.43382 -12.39147 -12.08219 -11.76483 -11.55875 -11.49787 -11.31062 -11.18082 -10.94514 -10.69160 -10.41710 -10.32378 -9.91730 -9.72227 -9.66045 -9.58581 -9.00222 -8.95360 -8.78133 -7.34773 -5.84125 -3.21507 -0.06064 0.72126 1.22606 2.05171 2.39782 2.89380 3.26376 3.31937 3.39404 3.78152 4.30702 4.37182 4.38364 4.50468 4.53553 4.57592 4.72283 4.91055 4.93808 4.99702 5.00368 5.17392 5.21870 5.25758 5.32589 5.34731 5.35896 5.45769 5.46714 5.50297 5.64539 5.78822 5.82693 5.84409 5.86692 6.07938 6.19873 6.33141 6.50847 6.53952 6.99479 7.28245 7.78499 7.81066 7.91217 8.33438 9.10261 9.82258 9.99742 11.34075 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024986 B = 0.002603 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.372444 B =10755.312090 C =11024.412026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.049 3.951 3 N -0.400 5.400 4 C 0.000 4.000 5 C 0.597 3.403 6 O -0.507 6.507 7 N -0.595 5.595 8 C 0.100 3.900 9 C -0.114 4.114 10 C 0.125 3.875 11 O -0.559 6.559 12 C 0.134 3.866 13 N -0.753 5.753 14 C -0.247 4.247 15 H 0.091 0.909 16 C 0.006 3.994 17 N -0.931 5.931 18 Si 0.885 3.115 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.279 1.279 22 C -0.159 4.159 23 C 0.119 3.881 24 S 0.192 5.808 25 C -0.242 4.242 26 C -0.077 4.077 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.380 0.620 35 H 0.035 0.965 36 H 0.038 0.962 37 H 0.357 0.643 38 H 0.260 0.740 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.079 0.921 42 H 0.095 0.905 43 H 0.080 0.920 44 H 0.074 0.926 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.219 -19.420 -14.816 29.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.088 4.088 3 N -0.115 5.115 4 C -0.276 4.276 5 C 0.380 3.620 6 O -0.381 6.381 7 N -0.329 5.329 8 C -0.023 4.023 9 C -0.153 4.153 10 C 0.084 3.916 11 O -0.366 6.366 12 C 0.006 3.994 13 N -0.400 5.400 14 C -0.376 4.376 15 H 0.108 0.892 16 C -0.190 4.190 17 N -0.579 5.579 18 Si 0.715 3.285 19 H -0.210 1.210 20 H -0.216 1.216 21 H -0.205 1.205 22 C -0.198 4.198 23 C -0.002 4.002 24 S 0.448 5.552 25 C -0.364 4.364 26 C -0.136 4.136 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.106 0.894 31 H 0.098 0.902 32 H 0.107 0.893 33 H 0.100 0.900 34 H 0.229 0.771 35 H 0.053 0.947 36 H 0.056 0.944 37 H 0.191 0.809 38 H 0.071 0.929 39 H 0.099 0.901 40 H 0.104 0.896 41 H 0.097 0.903 42 H 0.113 0.887 43 H 0.099 0.901 44 H 0.093 0.907 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -16.970 -19.324 -14.968 29.757 hybrid contribution 0.119 0.951 -0.934 1.338 sum -16.851 -18.374 -15.902 29.571 Atomic orbital electron populations 1.20414 0.86845 1.03543 1.03081 1.20218 0.98843 0.85685 1.04024 1.66531 1.03321 1.30571 1.11090 1.27235 0.94168 0.95715 1.10531 1.16722 0.80205 0.84457 0.80609 1.90846 1.75203 1.29756 1.42310 1.47921 1.18504 1.25634 1.40869 1.22052 1.02347 0.87983 0.89918 1.21822 0.97124 1.00095 0.96249 1.21373 0.86298 0.90708 0.93193 1.86382 1.21804 1.42140 1.86271 1.21291 0.92363 0.92319 0.93399 1.42685 1.43698 1.47446 1.06207 1.19019 1.15507 1.15940 0.87180 0.89157 1.24693 0.98909 0.98891 0.96538 1.69700 1.31592 1.30382 1.26205 0.86569 0.78987 0.78270 0.84678 1.20950 1.21581 1.20506 1.22576 1.03741 0.98677 0.94769 1.21696 0.89541 0.90873 0.98093 1.84028 1.03946 1.02485 1.64707 1.25520 0.98376 1.01855 1.10668 1.20318 1.01369 0.88621 1.03282 0.90537 0.90524 0.90374 0.89357 0.90248 0.89276 0.89971 0.77120 0.94695 0.94366 0.80884 0.92940 0.90072 0.89574 0.90287 0.88710 0.90126 0.90744 0.89787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.56 10.02 36.01 0.36 -0.20 16 2 C 0.05 0.50 6.68 -84.48 -0.56 -0.06 16 3 N -0.40 -5.40 10.62 -7.69 -0.08 -5.48 16 4 C 0.00 0.01 6.45 -14.43 -0.09 -0.09 16 5 C 0.60 8.71 7.66 -12.60 -0.10 8.61 16 6 O -0.51 -9.09 16.53 5.26 0.09 -9.01 16 7 N -0.60 -7.53 2.97 -174.10 -0.52 -8.04 16 8 C 0.10 1.07 5.39 -3.71 -0.02 1.05 16 9 C -0.11 -1.34 5.11 -26.61 -0.14 -1.47 16 10 C 0.13 1.78 0.71 -90.58 -0.06 1.71 16 11 O -0.56 -7.89 11.70 -35.23 -0.41 -8.30 16 12 C 0.13 2.42 5.43 -4.04 -0.02 2.39 16 13 N -0.75 -16.66 4.87 -59.91 -0.29 -16.95 16 14 C -0.25 -6.76 10.47 -15.06 -0.16 -6.92 16 15 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 16 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 17 N -0.93 -28.77 13.97 55.49 0.78 -28.00 16 18 Si 0.88 21.25 27.74 -169.99 -4.71 16.53 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 21 H -0.28 -6.03 6.52 56.52 0.37 -5.66 16 22 C -0.16 -2.24 4.88 -26.61 -0.13 -2.37 16 23 C 0.12 1.53 6.20 -3.71 -0.02 1.51 16 24 S 0.19 1.69 20.13 -107.50 -2.16 -0.48 16 25 C -0.24 -1.99 6.36 -35.72 -0.23 -2.22 16 26 C -0.08 -0.35 10.04 36.00 0.36 0.01 16 27 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.08 0.35 6.60 -51.93 -0.34 0.01 16 29 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.09 0.89 7.81 -51.93 -0.41 0.49 16 31 H 0.08 0.75 4.50 -36.82 -0.17 0.58 16 32 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.38 5.27 8.19 45.56 0.37 5.64 16 35 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.36 7.49 3.41 -40.82 -0.14 7.35 16 38 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 39 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.09 1.30 6.53 -51.93 -0.34 0.96 16 41 H 0.08 0.93 7.81 -51.93 -0.41 0.53 16 42 H 0.09 1.29 7.00 -51.93 -0.36 0.93 16 43 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 44 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 45 H 0.08 0.28 6.65 -51.93 -0.35 -0.06 16 LS Contribution 368.30 15.07 5.55 5.55 Total: -1.00 -34.43 368.30 -8.21 -42.64 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -5.53 Total: 9.52 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: -0.91 Total: 2.02 kcal Atomic # 7 Polarization: -58.35 SS G_CDS: -0.12 Total: -58.47 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: -0.33 Total: -17.31 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.71 Total: 16.53 kcal Atomic # 16 Polarization: 1.69 SS G_CDS: -2.16 Total: -0.48 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.43 -8.21 -42.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717325275.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.485 kcal (2) G-P(sol) polarization free energy of solvation -34.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds