Wall clock time and date at job start Tue Mar 31 2020 22:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30711 * 122.10892 * 2 1 4 4 C 1.30551 * 115.90567 * 179.97438 * 3 2 1 5 5 C 1.47261 * 125.54048 * 180.02562 * 4 3 2 6 6 O 1.21623 * 119.99911 * 320.20097 * 5 4 3 7 7 N 1.34772 * 120.00114 * 140.20333 * 5 4 3 8 8 C 1.46928 * 120.63299 * 354.31743 * 7 5 4 9 9 C 1.53191 * 108.77683 * 233.59246 * 8 7 5 10 10 C 1.53040 * 109.31220 * 305.36448 * 9 8 7 11 11 O 1.42905 * 109.45702 * 301.35984 * 10 9 8 12 12 C 1.52995 * 109.46382 * 181.38733 * 10 9 8 13 13 N 1.46500 * 109.47647 * 184.99822 * 12 10 9 14 14 C 1.36936 * 120.00119 * 180.02562 * 13 12 10 15 15 H 1.08002 * 120.00000 * 359.97438 * 14 13 12 16 16 C 1.38813 * 119.99653 * 180.02562 * 14 13 12 17 17 N 1.31627 * 119.99391 * 179.97438 * 16 14 13 18 18 Si 1.86797 * 120.00187 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.46835 * 90.00577 * 18 16 14 20 20 H 1.48497 * 109.47232 * 210.00156 * 18 16 14 21 21 H 1.48499 * 109.47101 * 330.00461 * 18 16 14 22 22 C 1.53044 * 109.53934 * 61.36480 * 10 9 8 23 23 C 1.46930 * 120.62809 * 174.30175 * 7 5 4 24 24 S 1.76095 * 108.91913 * 0.26023 * 4 3 2 25 25 C 1.34235 * 122.10918 * 179.97438 * 2 1 3 26 26 C 1.50697 * 125.45375 * 0.05306 * 25 2 1 27 27 H 1.08996 * 109.46911 * 90.02664 * 1 2 3 28 28 H 1.09000 * 109.46659 * 210.02325 * 1 2 3 29 29 H 1.08999 * 109.47069 * 330.02343 * 1 2 3 30 30 H 1.08993 * 109.58743 * 113.79795 * 8 7 5 31 31 H 1.09003 * 109.58191 * 353.38008 * 8 7 5 32 32 H 1.09001 * 109.49858 * 185.41225 * 9 8 7 33 33 H 1.09000 * 109.49718 * 65.31428 * 9 8 7 34 34 H 0.96705 * 113.99995 * 180.02562 * 11 10 9 35 35 H 1.09000 * 109.46894 * 305.00219 * 12 10 9 36 36 H 1.09005 * 109.46719 * 64.99541 * 12 10 9 37 37 H 0.96994 * 119.99318 * 359.97438 * 13 12 10 38 38 H 0.96998 * 119.99258 * 179.97438 * 17 16 14 39 39 H 1.08990 * 109.49309 * 58.58866 * 22 10 9 40 40 H 1.09003 * 109.49394 * 178.68259 * 22 10 9 41 41 H 1.09004 * 109.58241 * 246.19139 * 23 7 5 42 42 H 1.08997 * 109.59223 * 6.61989 * 23 7 5 43 43 H 1.09000 * 109.47235 * 90.00538 * 26 25 2 44 44 H 1.08999 * 109.47247 * 210.00613 * 26 25 2 45 45 H 1.09004 * 109.47133 * 330.00096 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2018 1.1072 0.0000 4 6 3.4996 0.9661 0.0005 5 6 4.4801 2.0649 0.0012 6 8 4.2815 3.0575 -0.6729 7 7 5.5975 1.9705 0.7487 8 6 5.7935 0.8366 1.6623 9 6 6.0992 1.3785 3.0622 10 6 7.2901 2.3366 2.9851 11 8 8.4227 1.6465 2.4530 12 6 7.6203 2.8532 4.3868 13 7 8.6809 3.8600 4.2991 14 6 9.1449 4.4667 5.4357 15 1 8.7286 4.2032 6.3968 16 6 10.1495 5.4210 5.3523 17 7 10.5951 6.0045 6.4449 18 14 10.8690 5.8771 3.6899 19 1 10.0942 7.0019 3.1071 20 1 12.2860 6.2875 3.8596 21 1 10.7986 4.7044 2.7816 22 6 6.9394 3.5170 2.0763 23 6 6.6431 2.9993 0.6652 24 16 3.8873 -0.7516 -0.0065 25 6 2.2205 -1.1370 0.0005 26 6 1.6454 -2.5299 0.0000 27 1 -0.3633 -0.0005 -1.0276 28 1 -0.3633 -0.8898 0.5142 29 1 -0.3633 0.8902 0.5135 30 1 6.6286 0.2281 1.3156 31 1 4.8869 0.2323 1.6943 32 1 6.3412 0.5501 3.7281 33 1 5.2282 1.9107 3.4445 34 1 9.2162 2.1938 2.3759 35 1 6.7299 3.3010 4.8281 36 1 7.9568 2.0243 5.0096 37 1 9.0550 4.0962 3.4359 38 1 11.2973 6.6710 6.3866 39 1 6.0605 4.0290 2.4679 40 1 7.7794 4.2107 2.0405 41 1 7.5477 2.5671 0.2372 42 1 6.2973 3.8220 0.0394 43 1 1.5076 -2.8657 -1.0278 44 1 2.3288 -3.2054 0.5144 45 1 0.6836 -2.5261 0.5131 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717325275.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:33 Heat of formation + Delta-G solvation = -46.723065 kcal Electronic energy + Delta-G solvation = -27625.816820 eV Core-core repulsion = 23769.633841 eV Total energy + Delta-G solvation = -3856.182979 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.79712 -40.92115 -39.70265 -37.04639 -35.89870 -34.40538 -33.66499 -32.55738 -32.43480 -30.75402 -28.92257 -27.46895 -25.93724 -25.44663 -24.27137 -23.40249 -21.93211 -20.85542 -20.03581 -19.66024 -19.39963 -18.31681 -17.45568 -17.24926 -16.76007 -16.65253 -16.12182 -15.96255 -15.68283 -15.56185 -14.88589 -14.85688 -14.79146 -14.62300 -14.33634 -14.05872 -14.01944 -13.87846 -13.80127 -13.52084 -13.27803 -13.18056 -12.86300 -12.84788 -12.80320 -12.42047 -12.30917 -12.13842 -12.11283 -11.89237 -11.72507 -11.48253 -11.02587 -10.84867 -10.77718 -10.39582 -9.91105 -9.58748 -9.34848 -8.04168 -5.39413 -0.83043 -0.03394 0.52282 1.16884 1.35139 1.41970 1.48205 1.49086 1.95973 2.47063 2.95784 3.18083 3.30724 3.40898 3.58228 3.69002 3.77206 3.83102 3.88449 3.99283 4.01907 4.19345 4.28580 4.44330 4.55237 4.59148 4.65733 4.69035 4.71874 4.75194 4.79117 4.81258 4.90710 4.93252 5.00614 5.04913 5.06653 5.22630 5.32580 5.34205 5.73154 6.01140 6.17833 6.53129 6.69433 6.76616 7.04874 7.77365 7.96952 9.17185 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024986 B = 0.002603 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.372444 B =10755.312090 C =11024.412026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.021 3.979 3 N -0.435 5.435 4 C -0.049 4.049 5 C 0.595 3.405 6 O -0.556 6.556 7 N -0.591 5.591 8 C 0.104 3.896 9 C -0.113 4.113 10 C 0.138 3.862 11 O -0.554 6.554 12 C 0.131 3.869 13 N -0.751 5.751 14 C -0.236 4.236 15 H 0.053 0.947 16 C -0.064 4.064 17 N -0.984 5.984 18 Si 0.953 3.047 19 H -0.281 1.281 20 H -0.298 1.298 21 H -0.237 1.237 22 C -0.155 4.155 23 C 0.123 3.877 24 S 0.252 5.748 25 C -0.225 4.225 26 C -0.081 4.081 27 H 0.083 0.917 28 H 0.104 0.896 29 H 0.065 0.935 30 H 0.103 0.897 31 H 0.094 0.906 32 H 0.106 0.894 33 H 0.080 0.920 34 H 0.383 0.617 35 H 0.029 0.971 36 H 0.034 0.966 37 H 0.366 0.634 38 H 0.258 0.742 39 H 0.068 0.932 40 H 0.079 0.921 41 H 0.097 0.903 42 H 0.083 0.917 43 H 0.096 0.904 44 H 0.089 0.911 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.887 -22.869 -16.820 33.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.116 4.116 3 N -0.152 5.152 4 C -0.323 4.323 5 C 0.379 3.621 6 O -0.434 6.434 7 N -0.324 5.324 8 C -0.019 4.019 9 C -0.152 4.152 10 C 0.097 3.903 11 O -0.361 6.361 12 C 0.004 3.996 13 N -0.399 5.399 14 C -0.367 4.367 15 H 0.071 0.929 16 C -0.256 4.256 17 N -0.634 5.634 18 Si 0.779 3.221 19 H -0.208 1.208 20 H -0.224 1.224 21 H -0.161 1.161 22 C -0.194 4.194 23 C 0.002 3.998 24 S 0.509 5.491 25 C -0.348 4.348 26 C -0.140 4.140 27 H 0.101 0.899 28 H 0.123 0.877 29 H 0.084 0.916 30 H 0.121 0.879 31 H 0.112 0.888 32 H 0.124 0.876 33 H 0.099 0.901 34 H 0.232 0.768 35 H 0.047 0.953 36 H 0.052 0.948 37 H 0.201 0.799 38 H 0.067 0.933 39 H 0.087 0.913 40 H 0.097 0.903 41 H 0.115 0.885 42 H 0.102 0.898 43 H 0.115 0.885 44 H 0.108 0.892 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -17.649 -22.832 -16.984 33.485 hybrid contribution 0.222 1.866 -0.209 1.891 sum -17.427 -20.965 -17.194 32.232 Atomic orbital electron populations 1.20510 0.85103 1.04312 1.03776 1.20664 1.00157 0.85556 1.05190 1.66510 1.04180 1.32926 1.11559 1.26861 0.93892 0.97544 1.14021 1.17067 0.80590 0.84457 0.79945 1.90798 1.76386 1.31861 1.44389 1.47979 1.17925 1.25884 1.40594 1.22179 1.03620 0.87433 0.88640 1.21848 0.95801 1.00095 0.97436 1.21223 0.87275 0.91318 0.90514 1.86392 1.21812 1.42010 1.85904 1.21454 0.90774 0.91089 0.96240 1.42589 1.44434 1.47876 1.04964 1.18972 1.14673 1.15498 0.87543 0.92852 1.25564 0.99894 0.99290 1.00830 1.69896 1.32729 1.31631 1.29176 0.85451 0.77168 0.79245 0.80188 1.20769 1.22449 1.16132 1.22509 1.02875 0.98478 0.95544 1.21634 0.90235 0.90999 0.96961 1.83683 1.03907 0.98552 1.63003 1.26113 0.98152 1.03124 1.07389 1.20569 1.02395 0.86269 1.04740 0.89865 0.87715 0.91643 0.87878 0.88812 0.87551 0.90103 0.76803 0.95284 0.94755 0.79864 0.93324 0.91336 0.90297 0.88529 0.89848 0.88520 0.89204 0.88025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.97 10.02 71.24 0.71 -0.25 16 2 C 0.02 0.39 6.68 41.81 0.28 0.67 16 3 N -0.43 -11.69 10.62 -178.24 -1.89 -13.58 16 4 C -0.05 -1.23 6.45 87.26 0.56 -0.66 16 5 C 0.59 17.41 7.66 86.62 0.66 18.08 16 6 O -0.56 -20.75 16.53 -4.10 -0.07 -20.82 16 7 N -0.59 -14.30 2.97 -822.97 -2.45 -16.75 16 8 C 0.10 1.94 5.39 86.36 0.47 2.41 16 9 C -0.11 -2.40 5.11 30.67 0.16 -2.24 16 10 C 0.14 3.66 0.71 -10.77 -0.01 3.65 16 11 O -0.55 -13.98 11.70 -148.98 -1.74 -15.73 16 12 C 0.13 4.63 5.43 86.38 0.47 5.10 16 13 N -0.75 -32.64 4.87 -343.45 -1.67 -34.31 16 14 C -0.24 -13.13 10.47 84.03 0.88 -12.25 16 15 H 0.05 3.30 8.06 -2.91 -0.02 3.28 16 16 C -0.06 -3.72 5.50 84.86 0.47 -3.25 16 17 N -0.98 -62.61 13.97 21.65 0.30 -62.31 16 18 Si 0.95 43.53 27.74 68.60 1.90 45.43 16 19 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 20 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 21 H -0.24 -9.12 6.52 99.48 0.65 -8.47 16 22 C -0.16 -4.22 4.88 30.67 0.15 -4.07 16 23 C 0.12 3.04 6.20 86.36 0.54 3.57 16 24 S 0.25 3.74 20.13 -56.49 -1.14 2.60 16 25 C -0.22 -3.01 6.36 24.77 0.16 -2.85 16 26 C -0.08 -0.38 10.04 71.23 0.72 0.34 16 27 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.10 0.63 6.60 -2.39 -0.02 0.61 16 29 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.10 1.69 7.81 -2.39 -0.02 1.68 16 31 H 0.09 1.51 4.50 -11.99 -0.05 1.46 16 32 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.38 9.37 8.19 -74.05 -0.61 8.77 16 35 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 37 H 0.37 14.62 3.41 -92.71 -0.32 14.30 16 38 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 39 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.08 2.25 6.53 -2.39 -0.02 2.24 16 41 H 0.10 2.05 7.81 -2.39 -0.02 2.03 16 42 H 0.08 2.28 7.00 -2.39 -0.02 2.27 16 43 H 0.10 0.25 8.14 -2.39 -0.02 0.24 16 44 H 0.09 0.21 8.14 -2.39 -0.02 0.19 16 45 H 0.10 0.19 6.65 -2.38 -0.02 0.18 16 Total: -1.00 -78.59 368.30 -0.53 -79.13 By element: Atomic # 1 Polarization: 28.07 SS G_CDS: 0.02 Total: 28.09 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: 6.21 Total: 8.24 kcal Atomic # 7 Polarization: -121.23 SS G_CDS: -5.71 Total: -126.94 kcal Atomic # 8 Polarization: -34.73 SS G_CDS: -1.81 Total: -36.55 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 1.90 Total: 45.43 kcal Atomic # 16 Polarization: 3.74 SS G_CDS: -1.14 Total: 2.60 kcal Total: -78.59 -0.53 -79.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717325275.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.402 kcal (2) G-P(sol) polarization free energy of solvation -78.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds