Wall clock time and date at job start Tue Mar 31 2020 23:06:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.50697 * 109.47297 * 2 1
4 4 N 1.30179 * 126.80512 * 269.68794 * 3 2 1
5 5 O 1.20927 * 111.60367 * 180.26116 * 4 3 2
6 6 C 1.34037 * 111.56699 * 359.97438 * 5 4 3
7 7 C 1.35449 * 106.44977 * 0.02562 * 6 5 4
8 8 C 1.50701 * 128.00914 * 179.97438 * 7 6 5
9 9 N 1.46894 * 109.47154 * 260.04000 * 8 7 6
10 10 C 1.47484 * 111.00207 * 265.97132 * 9 8 7
11 11 C 1.53515 * 87.93226 * 221.29720 * 10 9 8
12 12 N 1.46503 * 114.34323 * 272.36276 * 11 10 9
13 13 C 1.46498 * 119.99737 * 33.92425 * 12 11 10
14 14 C 1.34772 * 119.99730 * 213.92322 * 12 11 10
15 15 O 1.21279 * 120.00439 * 359.97438 * 14 12 11
16 16 C 1.50701 * 119.99671 * 179.97438 * 14 12 11
17 17 S 1.81004 * 109.47129 * 179.97438 * 16 14 12
18 18 C 1.76202 * 100.00000 * 180.02562 * 17 16 14
19 19 H 1.07997 * 119.99760 * 359.97438 * 18 17 16
20 20 C 1.38794 * 119.99744 * 180.02562 * 18 17 16
21 21 N 1.31623 * 120.00264 * 359.97438 * 20 18 17
22 22 Si 1.86808 * 119.99719 * 180.02562 * 20 18 17
23 23 H 1.48499 * 109.47137 * 359.97438 * 22 20 18
24 24 H 1.48505 * 109.46893 * 119.99827 * 22 20 18
25 25 H 1.48498 * 109.46963 * 239.99478 * 22 20 18
26 26 C 1.47481 * 110.99781 * 169.99712 * 9 8 7
27 27 H 1.09001 * 109.47379 * 179.97438 * 1 2 3
28 28 H 1.08995 * 109.47275 * 299.99874 * 1 2 3
29 29 H 1.09009 * 109.46862 * 59.99974 * 1 2 3
30 30 H 1.09004 * 109.47008 * 240.00083 * 2 1 3
31 31 H 1.08997 * 109.47129 * 120.00315 * 2 1 3
32 32 H 1.08002 * 126.77549 * 180.02562 * 6 5 4
33 33 H 1.08998 * 109.47004 * 20.04054 * 8 7 6
34 34 H 1.09004 * 109.46963 * 140.03894 * 8 7 6
35 35 H 1.09002 * 113.47538 * 336.06170 * 10 9 8
36 36 H 1.08999 * 113.47892 * 106.53022 * 10 9 8
37 37 H 1.09002 * 114.17199 * 139.66993 * 11 10 9
38 38 H 1.09005 * 109.47182 * 90.00115 * 13 12 11
39 39 H 1.08994 * 109.46988 * 209.99630 * 13 12 11
40 40 H 1.08998 * 109.47241 * 330.00191 * 13 12 11
41 41 H 1.09001 * 109.47581 * 300.00075 * 16 14 12
42 42 H 1.09010 * 109.47011 * 60.00267 * 16 14 12
43 43 H 0.97004 * 119.99926 * 180.02562 * 21 20 18
44 44 H 1.08993 * 113.47905 * 253.46675 * 26 9 8
45 45 H 1.08998 * 113.47934 * 23.88481 * 26 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 7 2.2977 2.1542 -1.0423
5 8 2.6899 3.2532 -0.7252
6 6 2.7360 3.3945 0.6069
7 6 2.3144 2.2194 1.1321
8 6 2.1777 1.8488 2.5864
9 7 3.3401 1.0514 2.9998
10 6 3.0597 -0.3918 2.8828
11 6 3.7859 -0.5849 4.2215
12 7 5.2331 -0.7778 4.1011
13 6 5.9779 -0.0920 3.0422
14 6 5.8793 -1.5862 4.9644
15 8 5.2628 -2.1536 5.8413
16 6 7.3679 -1.7851 4.8402
17 16 7.9356 -2.9161 6.1344
18 6 9.6574 -2.9662 5.7632
19 1 10.0482 -2.3932 4.9354
20 6 10.5110 -3.7430 6.5341
21 7 10.0346 -4.4418 7.5427
22 14 12.3365 -3.7957 6.1411
23 1 12.6157 -2.9281 4.9686
24 1 13.1093 -3.3095 7.3124
25 1 12.7357 -5.1916 5.8296
26 6 3.3638 0.8712 4.4634
27 1 -0.3634 -1.0277 -0.0005
28 1 -0.3633 0.5138 0.8899
29 1 -0.3633 0.5139 -0.8901
30 1 1.8933 -0.5138 -0.8900
31 1 1.8933 -0.5139 0.8899
32 1 3.0478 4.2722 1.1536
33 1 2.1262 2.7555 3.1891
34 1 1.2678 1.2656 2.7288
35 1 1.9975 -0.6327 2.9263
36 1 3.5659 -0.8657 2.0419
37 1 3.3098 -1.3042 4.8879
38 1 6.3213 0.8758 3.4079
39 1 6.8373 -0.6965 2.7525
40 1 5.3293 0.0552 2.1787
41 1 7.5978 -2.2072 3.8619
42 1 7.8731 -0.8254 4.9496
43 1 10.6313 -4.9844 8.0816
44 1 4.1278 1.4676 4.9620
45 1 2.3830 0.9683 4.9289
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001723734736.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:06:02
Heat of formation + Delta-G solvation = 73.101336 kcal
Electronic energy + Delta-G solvation = -26860.793100 eV
Core-core repulsion = 23009.806097 eV
Total energy + Delta-G solvation = -3850.987003 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-45.22573 -41.02574 -38.70760 -36.14344 -34.71530 -33.18767 -32.42916 -31.43138
-30.24995 -28.59284 -26.99450 -26.33956 -25.51579 -24.99715 -24.39853 -21.67511
-21.26358 -20.87684 -18.65365 -17.98290 -17.74297 -17.63564 -16.93878 -16.40139
-15.76970 -15.73174 -15.36156 -14.99340 -14.80644 -14.64371 -14.51310 -13.97106
-13.67360 -13.44739 -13.11176 -13.09818 -12.83334 -12.65182 -12.41550 -12.23202
-12.04288 -12.00479 -11.96143 -11.79819 -11.53490 -11.10040 -11.07458 -11.01627
-11.01122 -10.75017 -10.18712 -9.81858 -9.77097 -9.47146 -9.21514 -9.07332
-8.51178 -8.22468 -6.50215 -6.21817 -3.92234 1.19567 1.86250 2.86269
2.94556 2.98729 3.21708 3.25819 3.31228 3.57387 3.66946 3.82066
4.08003 4.20314 4.28951 4.40097 4.53326 4.55499 4.80902 4.84172
4.84662 4.90525 4.96848 5.06953 5.10400 5.13537 5.19466 5.31217
5.33021 5.33535 5.44043 5.48849 5.58263 5.60360 5.63618 5.64821
5.78277 5.80617 5.86937 5.90296 5.95512 6.15267 6.55691 6.66842
7.54565 7.60352 7.97797 8.35656 8.53033 9.23824 10.85665
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.020996 B = 0.002130 C = 0.002055
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1333.288926 B =13142.026371 C =13625.013237
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C -0.055 4.055
3 C 0.030 3.970
4 N -0.367 5.367
5 O 0.096 5.904
6 C -0.047 4.047
7 C -0.185 4.185
8 C 0.094 3.906
9 N -0.462 5.462
10 C -0.017 4.017
11 C 0.124 3.876
12 N -0.599 5.599
13 C 0.086 3.914
14 C 0.536 3.464
15 O -0.517 6.517
16 C -0.148 4.148
17 S -0.063 6.063
18 C -0.533 4.533
19 H 0.073 0.927
20 C 0.073 3.927
21 N -0.868 5.868
22 Si 0.918 3.082
23 H -0.272 1.272
24 H -0.280 1.280
25 H -0.280 1.280
26 C -0.015 4.015
27 H 0.066 0.934
28 H 0.056 0.944
29 H 0.056 0.944
30 H 0.081 0.919
31 H 0.090 0.910
32 H 0.215 0.785
33 H 0.087 0.913
34 H 0.061 0.939
35 H 0.083 0.917
36 H 0.092 0.908
37 H 0.116 0.884
38 H 0.053 0.947
39 H 0.068 0.932
40 H 0.079 0.921
41 H 0.090 0.910
42 H 0.090 0.910
43 H 0.268 0.732
44 H 0.092 0.908
45 H 0.079 0.921
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.351 15.357 -13.828 28.311
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.093 4.093
3 C -0.130 4.130
4 N -0.071 5.071
5 O 0.032 5.968
6 C -0.130 4.130
7 C -0.190 4.190
8 C -0.035 4.035
9 N -0.184 5.184
10 C -0.146 4.146
11 C 0.018 3.982
12 N -0.334 5.334
13 C -0.057 4.057
14 C 0.324 3.676
15 O -0.391 6.391
16 C -0.299 4.299
17 S 0.164 5.836
18 C -0.681 4.681
19 H 0.091 0.909
20 C -0.136 4.136
21 N -0.503 5.503
22 Si 0.745 3.255
23 H -0.196 1.196
24 H -0.206 1.206
25 H -0.206 1.206
26 C -0.145 4.145
27 H 0.085 0.915
28 H 0.075 0.925
29 H 0.076 0.924
30 H 0.100 0.900
31 H 0.108 0.892
32 H 0.231 0.769
33 H 0.106 0.894
34 H 0.079 0.921
35 H 0.101 0.899
36 H 0.110 0.890
37 H 0.134 0.866
38 H 0.072 0.928
39 H 0.087 0.913
40 H 0.097 0.903
41 H 0.108 0.892
42 H 0.108 0.892
43 H 0.077 0.923
44 H 0.111 0.889
45 H 0.098 0.902
Dipole moment (debyes) X Y Z Total
from point charges -19.716 14.529 -14.079 28.250
hybrid contribution 1.182 0.573 -0.135 1.320
sum -18.535 15.102 -14.214 27.814
Atomic orbital electron populations
1.21717 0.93947 1.02449 1.02261 1.20106 0.96410 0.88478 1.04307
1.23461 1.01960 0.99116 0.88417 1.73850 1.16152 0.92898 1.24238
1.84826 1.62178 1.26794 1.23048 1.25769 1.02374 1.01262 0.83557
1.21001 1.07072 0.94037 0.96865 1.20877 0.93441 0.99628 0.89530
1.69037 1.34084 1.05209 1.10076 1.24485 1.00125 0.90408 0.99631
1.21868 0.82444 0.96824 0.97065 1.47436 1.06013 1.47518 1.32426
1.21751 0.96489 0.96798 0.90630 1.20385 0.89484 0.77341 0.80368
1.90687 1.68254 1.46868 1.33281 1.23548 0.93531 1.05985 1.06794
1.85379 1.06669 1.55684 1.35888 1.22894 0.92605 1.33567 1.19081
0.90883 1.24992 0.99499 0.94609 0.94514 1.70027 1.35660 1.27393
1.17223 0.86120 0.82942 0.78059 0.78398 1.19602 1.20566 1.20574
1.24360 1.01999 0.98057 0.90099 0.91465 0.92497 0.92441 0.90022
0.89210 0.76877 0.89428 0.92057 0.89940 0.88985 0.86631 0.92820
0.91343 0.90284 0.89190 0.89188 0.92252 0.88918 0.90241
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.89 9.89 37.16 0.37 -0.52 16
2 C -0.06 -0.41 6.44 -27.89 -0.18 -0.59 16
3 C 0.03 0.28 6.58 -82.10 -0.54 -0.26 16
4 N -0.37 -4.00 12.07 33.43 0.40 -3.59 16
5 O 0.10 0.91 11.20 17.18 0.19 1.10 16
6 C -0.05 -0.33 12.26 29.74 0.36 0.04 16
7 C -0.19 -1.44 5.91 -104.42 -0.62 -2.05 16
8 C 0.09 0.60 5.30 -4.98 -0.03 0.57 16
9 N -0.46 -3.69 4.90 -246.06 -1.21 -4.89 16
10 C -0.02 -0.14 4.88 -7.53 -0.04 -0.17 16
11 C 0.12 1.37 4.66 -67.71 -0.32 1.05 16
12 N -0.60 -8.22 3.11 -173.61 -0.54 -8.76 16
13 C 0.09 0.98 9.34 59.85 0.56 1.54 16
14 C 0.54 9.97 7.69 -10.99 -0.08 9.88 16
15 O -0.52 -11.44 15.37 5.56 0.09 -11.36 16
16 C -0.15 -2.99 4.71 36.01 0.17 -2.83 16
17 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16
18 C -0.53 -15.14 9.50 30.94 0.29 -14.84 16
19 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16
20 C 0.07 2.08 5.49 -17.44 -0.10 1.98 16
21 N -0.87 -26.08 13.22 55.49 0.73 -25.35 16
22 Si 0.92 21.38 29.55 -169.99 -5.02 16.35 16
23 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16
24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16
25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16
26 C -0.02 -0.13 7.31 -7.53 -0.06 -0.18 16
27 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16
28 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16
29 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16
30 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16
31 H 0.09 0.59 4.87 -51.93 -0.25 0.34 16
32 H 0.21 0.66 8.06 -52.49 -0.42 0.24 16
33 H 0.09 0.46 8.08 -51.93 -0.42 0.04 16
34 H 0.06 0.34 7.30 -51.93 -0.38 -0.04 16
35 H 0.08 0.52 6.91 -51.93 -0.36 0.16 16
36 H 0.09 0.81 6.81 -51.93 -0.35 0.46 16
37 H 0.12 1.43 7.28 -51.93 -0.38 1.05 16
38 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16
39 H 0.07 0.79 6.44 -51.93 -0.33 0.46 16
40 H 0.08 0.81 5.70 -51.93 -0.30 0.52 16
41 H 0.09 1.70 7.40 -51.92 -0.38 1.31 16
42 H 0.09 1.71 8.11 -51.91 -0.42 1.29 16
43 H 0.27 7.45 8.31 -40.82 -0.34 7.12 16
44 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16
45 H 0.08 0.53 7.91 -51.93 -0.41 0.12 16
LS Contribution 381.15 15.07 5.74 5.74
Total: -1.00 -35.04 381.15 -8.51 -43.56
By element:
Atomic # 1 Polarization: 3.99 SS G_CDS: -6.49 Total: -2.50 kcal
Atomic # 6 Polarization: -6.19 SS G_CDS: -0.20 Total: -6.38 kcal
Atomic # 7 Polarization: -41.99 SS G_CDS: -0.61 Total: -42.60 kcal
Atomic # 8 Polarization: -10.54 SS G_CDS: 0.28 Total: -10.26 kcal
Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal
Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal
Total LS contribution 5.74 Total: 5.74 kcal
Total: -35.04 -8.51 -43.56 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001723734736.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 116.657 kcal
(2) G-P(sol) polarization free energy of solvation -35.043 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.614 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.513 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.555 kcal
(6) G-S(sol) free energy of system = (1) + (5) 73.101 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds