Wall clock time and date at job start Tue Mar 31 2020 22:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32562 * 121.64758 * 2 1 4 4 S 1.77228 * 105.32245 * 180.19481 * 3 2 1 5 5 C 1.72212 * 94.84419 * 359.76435 * 4 3 2 6 6 O 1.21823 * 127.05450 * 180.02562 * 5 4 3 7 7 N 1.34249 * 105.88667 * 359.97438 * 5 4 3 8 8 C 1.46497 * 121.37941 * 179.97438 * 7 5 4 9 9 C 1.52993 * 109.47125 * 90.02346 * 8 7 5 10 10 C 1.50705 * 109.46947 * 179.97438 * 9 8 7 11 11 O 1.21278 * 119.99973 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99808 * 180.02562 * 10 9 8 13 13 C 1.46507 * 119.99670 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.46991 * 180.85304 * 13 12 10 15 15 N 1.46495 * 112.85135 * 292.11253 * 14 13 12 16 16 C 1.36938 * 120.00001 * 294.88327 * 15 14 13 17 17 H 1.08004 * 119.99919 * 353.69316 * 16 15 14 18 18 C 1.38808 * 120.00343 * 173.69092 * 16 15 14 19 19 N 1.31616 * 120.00024 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00258 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.46945 * 59.99751 * 20 18 16 22 22 H 1.48493 * 109.47312 * 180.02562 * 20 18 16 23 23 H 1.48508 * 109.46833 * 300.00097 * 20 18 16 24 24 C 1.53777 * 113.61419 * 160.91220 * 14 13 12 25 25 C 1.53955 * 87.02017 * 220.05234 * 24 14 13 26 26 C 1.53777 * 87.11385 * 25.36283 * 25 24 14 27 27 H 1.08996 * 109.46919 * 270.24528 * 1 2 3 28 28 H 1.09001 * 109.47153 * 30.24304 * 1 2 3 29 29 H 1.08996 * 109.47355 * 150.24228 * 1 2 3 30 30 H 1.08005 * 127.33716 * 359.93403 * 3 2 1 31 31 H 1.08999 * 109.46997 * 330.01934 * 8 7 5 32 32 H 1.08999 * 109.46369 * 210.02478 * 8 7 5 33 33 H 1.09004 * 109.47293 * 60.00319 * 9 8 7 34 34 H 1.08999 * 109.47605 * 299.99375 * 9 8 7 35 35 H 0.96994 * 120.00502 * 359.97438 * 12 10 9 36 36 H 1.09001 * 109.47183 * 300.85612 * 13 12 10 37 37 H 1.09003 * 109.47202 * 60.85809 * 13 12 10 38 38 H 0.97001 * 120.00607 * 114.88431 * 15 14 13 39 39 H 0.97002 * 120.00462 * 179.97438 * 19 18 16 40 40 H 1.09003 * 113.61748 * 334.56959 * 24 14 13 41 41 H 1.09003 * 113.61469 * 105.47089 * 24 14 13 42 42 H 1.09005 * 113.53624 * 270.81143 * 25 24 14 43 43 H 1.09002 * 113.66842 * 139.93944 * 25 24 14 44 44 H 1.09001 * 113.61613 * 220.09395 * 26 25 24 45 45 H 1.08997 * 113.61745 * 89.18715 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2026 1.1285 0.0000 4 16 3.9034 0.6303 -0.0058 5 6 3.5606 -1.0573 -0.0008 6 8 4.3673 -1.9702 -0.0016 7 7 2.2221 -1.1605 0.0054 8 6 1.5577 -2.4661 0.0106 9 6 1.3324 -2.9179 1.4548 10 6 0.6482 -4.2608 1.4600 11 8 0.3681 -4.8026 0.4118 12 7 0.3469 -4.8589 2.6296 13 6 -0.3177 -6.1646 2.6346 14 6 -0.5628 -6.6064 4.0787 15 7 0.6762 -6.9095 4.7991 16 6 1.4578 -7.9623 4.4042 17 1 1.1125 -8.6303 3.6290 18 6 2.6940 -8.1710 5.0002 19 7 3.1147 -7.3572 5.9452 20 14 3.7605 -9.6067 4.4610 21 1 4.0767 -9.4732 3.0162 22 1 5.0209 -9.6093 5.2460 23 1 3.0311 -10.8794 4.6925 24 6 -1.6374 -7.6981 4.2150 25 6 -2.1236 -6.9501 5.4697 26 6 -1.5148 -5.6796 4.8533 27 1 -0.3633 0.0044 1.0276 28 1 -0.3633 0.8878 -0.5176 29 1 -0.3634 -0.8921 -0.5100 30 1 1.8152 2.1367 -0.0010 31 1 2.1839 -3.1944 -0.5046 32 1 0.5976 -2.3870 -0.4994 33 1 0.7061 -2.1895 1.9699 34 1 2.2924 -2.9970 1.9648 35 1 0.5706 -4.4254 3.4679 36 1 -1.2706 -6.0893 2.1109 37 1 0.3156 -6.8966 2.1333 38 1 0.9431 -6.3645 5.5558 39 1 3.9783 -7.5032 6.3620 40 1 -2.3619 -7.7016 3.4006 41 1 -1.2306 -8.6873 4.4253 42 1 -1.6290 -7.2708 6.3866 43 1 -3.2089 -6.9130 5.5639 44 1 -1.0092 -5.0417 5.5782 45 1 -2.2056 -5.1303 4.2138 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724782343.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:54 Heat of formation + Delta-G solvation = -8.881099 kcal Electronic energy + Delta-G solvation = -27254.444618 eV Core-core repulsion = 23399.902590 eV Total energy + Delta-G solvation = -3854.542028 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.26305 -39.60718 -38.50920 -37.73909 -34.01483 -33.54924 -33.29227 -31.50937 -30.08150 -28.73135 -27.11673 -25.35348 -24.99577 -23.85250 -23.21994 -21.70287 -20.54675 -20.06107 -18.30848 -18.29281 -17.57230 -17.17036 -16.66761 -16.24310 -15.65523 -15.58691 -15.15267 -14.98350 -14.54387 -14.35859 -14.07551 -13.98597 -13.94158 -13.50549 -13.29591 -13.25038 -12.97700 -12.59243 -12.55172 -12.06435 -11.81948 -11.65682 -11.41104 -11.31869 -11.27274 -11.03392 -10.84914 -10.41016 -10.28847 -10.22991 -10.16124 -9.90647 -9.76194 -9.60665 -9.50599 -8.90477 -8.59224 -8.17381 -7.07825 -5.85199 -3.15439 0.75961 1.14143 1.57515 1.95744 2.51061 2.85942 3.41695 3.46958 3.47934 3.54158 4.21593 4.51974 4.52717 4.60929 4.74353 4.93597 5.02222 5.09764 5.13103 5.19856 5.21210 5.22618 5.27021 5.36307 5.40832 5.48630 5.53539 5.71985 5.74226 5.90067 5.98191 6.06681 6.13972 6.26981 6.33859 6.48659 6.51996 6.66179 6.83149 6.91527 7.00165 7.14546 7.66830 7.85573 8.33484 8.49355 9.44850 9.97595 10.32587 11.36639 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011864 B = 0.002914 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2359.437369 B = 9605.227128 C =11108.656934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.105 3.895 3 C -0.243 4.243 4 S -0.006 6.006 5 C 0.480 3.520 6 O -0.464 6.464 7 N -0.533 5.533 8 C 0.117 3.883 9 C -0.158 4.158 10 C 0.516 3.484 11 O -0.555 6.555 12 N -0.701 5.701 13 C 0.119 3.881 14 C 0.174 3.826 15 N -0.700 5.700 16 C -0.239 4.239 17 H 0.070 0.930 18 C -0.006 4.006 19 N -0.930 5.930 20 Si 0.905 3.095 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.285 1.285 24 C -0.151 4.151 25 C -0.128 4.128 26 C -0.144 4.144 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.080 0.920 30 H 0.191 0.809 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.401 0.599 36 H 0.055 0.945 37 H 0.069 0.931 38 H 0.386 0.614 39 H 0.256 0.744 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.081 0.919 43 H 0.054 0.946 44 H 0.064 0.936 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.892 18.709 -8.948 22.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.006 4.006 3 C -0.381 4.381 4 S 0.236 5.764 5 C 0.161 3.839 6 O -0.342 6.342 7 N -0.254 5.254 8 C -0.008 4.008 9 C -0.199 4.199 10 C 0.301 3.699 11 O -0.434 6.434 12 N -0.350 5.350 13 C -0.007 4.007 14 C 0.081 3.919 15 N -0.340 5.340 16 C -0.370 4.370 17 H 0.088 0.912 18 C -0.203 4.203 19 N -0.578 5.578 20 Si 0.735 3.265 21 H -0.211 1.211 22 H -0.217 1.217 23 H -0.212 1.212 24 C -0.191 4.191 25 C -0.166 4.166 26 C -0.182 4.182 27 H 0.105 0.895 28 H 0.108 0.892 29 H 0.098 0.902 30 H 0.208 0.792 31 H 0.123 0.877 32 H 0.121 0.879 33 H 0.114 0.886 34 H 0.119 0.881 35 H 0.236 0.764 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.221 0.779 39 H 0.066 0.934 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.100 0.900 43 H 0.073 0.927 44 H 0.083 0.917 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.261 18.219 -9.747 22.253 hybrid contribution -0.188 -1.161 0.500 1.278 sum -8.449 17.058 -9.247 21.163 Atomic orbital electron populations 1.20833 0.86624 1.04633 1.04194 1.19480 0.95895 0.84938 1.00266 1.24863 0.93183 1.01237 1.18858 1.85178 1.08561 1.01523 1.81113 1.21625 0.83847 0.95647 0.82748 1.91019 1.48520 1.42275 1.52430 1.46176 1.06392 1.07915 1.64893 1.21642 0.99849 0.82120 0.97148 1.21950 1.03351 0.96250 0.98309 1.20117 0.79019 0.86540 0.84244 1.90684 1.54784 1.66431 1.31503 1.45761 1.59835 1.21388 1.07979 1.21896 0.95899 0.83652 0.99227 1.20812 0.87450 0.94082 0.89593 1.42058 1.20820 1.35808 1.35333 1.19040 0.97154 1.03628 1.17192 0.91196 1.24722 0.97486 0.99032 0.99034 1.69633 1.21099 1.38859 1.28193 0.86311 0.79988 0.82134 0.78035 1.21145 1.21671 1.21195 1.23346 0.98384 1.00260 0.97135 1.22660 0.98741 0.96701 0.98472 1.23137 0.98749 0.96705 0.99620 0.89458 0.89154 0.90157 0.79221 0.87750 0.87888 0.88590 0.88102 0.76439 0.92658 0.91252 0.77934 0.93386 0.91334 0.90684 0.90038 0.92720 0.91689 0.90491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.48 9.69 36.01 0.35 -0.14 16 2 C 0.11 0.83 6.59 -82.51 -0.54 0.29 16 3 C -0.24 -1.76 11.24 28.82 0.32 -1.43 16 4 S -0.01 -0.07 22.97 -107.50 -2.47 -2.54 16 5 C 0.48 6.56 8.27 53.82 0.45 7.00 16 6 O -0.46 -8.19 17.55 5.08 0.09 -8.10 16 7 N -0.53 -5.85 2.60 -117.29 -0.31 -6.15 16 8 C 0.12 1.36 4.56 -4.05 -0.02 1.34 16 9 C -0.16 -1.88 6.02 -27.88 -0.17 -2.05 16 10 C 0.52 8.05 7.83 -10.98 -0.09 7.97 16 11 O -0.55 -10.34 15.98 5.56 0.09 -10.25 16 12 N -0.70 -11.19 5.42 -60.29 -0.33 -11.52 16 13 C 0.12 2.11 5.08 -4.04 -0.02 2.09 16 14 C 0.17 3.09 0.80 -131.01 -0.10 2.99 16 15 N -0.70 -15.84 5.18 -46.48 -0.24 -16.08 16 16 C -0.24 -6.27 9.04 -15.06 -0.14 -6.40 16 17 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 18 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 19 N -0.93 -27.01 13.07 55.49 0.73 -26.29 16 20 Si 0.90 22.36 29.55 -169.99 -5.02 17.33 16 21 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 C -0.15 -2.50 7.29 -25.83 -0.19 -2.69 16 25 C -0.13 -1.92 8.00 -25.83 -0.21 -2.12 16 26 C -0.14 -2.09 7.05 -25.92 -0.18 -2.27 16 27 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.09 0.24 8.10 -51.93 -0.42 -0.18 16 29 H 0.08 0.40 6.18 -51.93 -0.32 0.08 16 30 H 0.19 0.76 8.06 -52.48 -0.42 0.34 16 31 H 0.10 1.47 7.76 -51.93 -0.40 1.07 16 32 H 0.10 1.00 6.07 -51.93 -0.32 0.68 16 33 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.10 1.36 8.14 -51.93 -0.42 0.93 16 35 H 0.40 6.01 8.31 -40.82 -0.34 5.67 16 36 H 0.06 0.90 8.02 -51.93 -0.42 0.49 16 37 H 0.07 1.47 7.80 -51.93 -0.41 1.06 16 38 H 0.39 9.34 7.87 -40.82 -0.32 9.01 16 39 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 40 H 0.07 1.00 8.01 -51.93 -0.42 0.58 16 41 H 0.07 1.41 7.87 -51.93 -0.41 1.00 16 42 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 43 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.06 0.94 8.09 -51.93 -0.42 0.52 16 45 H 0.08 0.97 8.10 -51.93 -0.42 0.55 16 LS Contribution 387.71 15.07 5.84 5.84 Total: -1.00 -32.82 387.71 -8.94 -41.77 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: -6.69 Total: 11.69 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: -0.63 Total: 4.29 kcal Atomic # 7 Polarization: -59.89 SS G_CDS: -0.15 Total: -60.03 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: 0.18 Total: -18.35 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Atomic # 16 Polarization: -0.07 SS G_CDS: -2.47 Total: -2.54 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.82 -8.94 -41.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724782343.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.884 kcal (2) G-P(sol) polarization free energy of solvation -32.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds