Wall clock time and date at job start Tue Mar 31 2020 22:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32562 * 121.64758 * 2 1 4 4 S 1.77228 * 105.32245 * 180.19481 * 3 2 1 5 5 C 1.72212 * 94.84419 * 359.76435 * 4 3 2 6 6 O 1.21823 * 127.05450 * 180.02562 * 5 4 3 7 7 N 1.34249 * 105.88667 * 359.97438 * 5 4 3 8 8 C 1.46497 * 121.37941 * 179.97438 * 7 5 4 9 9 C 1.52993 * 109.47125 * 90.02346 * 8 7 5 10 10 C 1.50705 * 109.46947 * 179.97438 * 9 8 7 11 11 O 1.21278 * 119.99973 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99808 * 180.02562 * 10 9 8 13 13 C 1.46507 * 119.99670 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.46991 * 180.85304 * 13 12 10 15 15 N 1.46495 * 112.85135 * 292.11253 * 14 13 12 16 16 C 1.36938 * 120.00001 * 294.88327 * 15 14 13 17 17 H 1.08004 * 119.99919 * 353.69316 * 16 15 14 18 18 C 1.38808 * 120.00343 * 173.69092 * 16 15 14 19 19 N 1.31616 * 120.00024 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00258 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.46945 * 59.99751 * 20 18 16 22 22 H 1.48493 * 109.47312 * 180.02562 * 20 18 16 23 23 H 1.48508 * 109.46833 * 300.00097 * 20 18 16 24 24 C 1.53777 * 113.61419 * 160.91220 * 14 13 12 25 25 C 1.53955 * 87.02017 * 220.05234 * 24 14 13 26 26 C 1.53777 * 87.11385 * 25.36283 * 25 24 14 27 27 H 1.08996 * 109.46919 * 270.24528 * 1 2 3 28 28 H 1.09001 * 109.47153 * 30.24304 * 1 2 3 29 29 H 1.08996 * 109.47355 * 150.24228 * 1 2 3 30 30 H 1.08005 * 127.33716 * 359.93403 * 3 2 1 31 31 H 1.08999 * 109.46997 * 330.01934 * 8 7 5 32 32 H 1.08999 * 109.46369 * 210.02478 * 8 7 5 33 33 H 1.09004 * 109.47293 * 60.00319 * 9 8 7 34 34 H 1.08999 * 109.47605 * 299.99375 * 9 8 7 35 35 H 0.96994 * 120.00502 * 359.97438 * 12 10 9 36 36 H 1.09001 * 109.47183 * 300.85612 * 13 12 10 37 37 H 1.09003 * 109.47202 * 60.85809 * 13 12 10 38 38 H 0.97001 * 120.00607 * 114.88431 * 15 14 13 39 39 H 0.97002 * 120.00462 * 179.97438 * 19 18 16 40 40 H 1.09003 * 113.61748 * 334.56959 * 24 14 13 41 41 H 1.09003 * 113.61469 * 105.47089 * 24 14 13 42 42 H 1.09005 * 113.53624 * 270.81143 * 25 24 14 43 43 H 1.09002 * 113.66842 * 139.93944 * 25 24 14 44 44 H 1.09001 * 113.61613 * 220.09395 * 26 25 24 45 45 H 1.08997 * 113.61745 * 89.18715 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2026 1.1285 0.0000 4 16 3.9034 0.6303 -0.0058 5 6 3.5606 -1.0573 -0.0008 6 8 4.3673 -1.9702 -0.0016 7 7 2.2221 -1.1605 0.0054 8 6 1.5577 -2.4661 0.0106 9 6 1.3324 -2.9179 1.4548 10 6 0.6482 -4.2608 1.4600 11 8 0.3681 -4.8026 0.4118 12 7 0.3469 -4.8589 2.6296 13 6 -0.3177 -6.1646 2.6346 14 6 -0.5628 -6.6064 4.0787 15 7 0.6762 -6.9095 4.7991 16 6 1.4578 -7.9623 4.4042 17 1 1.1125 -8.6303 3.6290 18 6 2.6940 -8.1710 5.0002 19 7 3.1147 -7.3572 5.9452 20 14 3.7605 -9.6067 4.4610 21 1 4.0767 -9.4732 3.0162 22 1 5.0209 -9.6093 5.2460 23 1 3.0311 -10.8794 4.6925 24 6 -1.6374 -7.6981 4.2150 25 6 -2.1236 -6.9501 5.4697 26 6 -1.5148 -5.6796 4.8533 27 1 -0.3633 0.0044 1.0276 28 1 -0.3633 0.8878 -0.5176 29 1 -0.3634 -0.8921 -0.5100 30 1 1.8152 2.1367 -0.0010 31 1 2.1839 -3.1944 -0.5046 32 1 0.5976 -2.3870 -0.4994 33 1 0.7061 -2.1895 1.9699 34 1 2.2924 -2.9970 1.9648 35 1 0.5706 -4.4254 3.4679 36 1 -1.2706 -6.0893 2.1109 37 1 0.3156 -6.8966 2.1333 38 1 0.9431 -6.3645 5.5558 39 1 3.9783 -7.5032 6.3620 40 1 -2.3619 -7.7016 3.4006 41 1 -1.2306 -8.6873 4.4253 42 1 -1.6290 -7.2708 6.3866 43 1 -3.2089 -6.9130 5.5639 44 1 -1.0092 -5.0417 5.5782 45 1 -2.2056 -5.1303 4.2138 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724782343.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:53 Heat of formation + Delta-G solvation = -31.893088 kcal Electronic energy + Delta-G solvation = -27255.442493 eV Core-core repulsion = 23399.902590 eV Total energy + Delta-G solvation = -3855.539903 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.14112 -40.93737 -39.86117 -38.72452 -35.35854 -35.22264 -34.45571 -32.29364 -31.91184 -29.66157 -28.26515 -26.72488 -26.07056 -25.52691 -24.17834 -23.01059 -21.54431 -21.20003 -19.73839 -19.14404 -19.06476 -18.64811 -17.73602 -17.32020 -16.97684 -16.79157 -16.49367 -16.09673 -15.92984 -15.60775 -15.34448 -15.08338 -14.74954 -14.69498 -14.54795 -14.39404 -14.10867 -13.72374 -13.59399 -13.12642 -13.06610 -12.97393 -12.91534 -12.58312 -12.42434 -12.27674 -12.23560 -12.05445 -11.95610 -11.61036 -11.49221 -11.26742 -11.10316 -10.90519 -10.77791 -10.58168 -9.98238 -9.00826 -8.96763 -7.97547 -5.23726 -0.14726 0.37271 0.87487 1.11477 1.41369 1.43949 1.48257 1.58015 1.67645 2.34011 2.51732 3.34957 3.51324 3.61851 3.67804 3.74398 3.81128 3.90369 4.00199 4.10272 4.18096 4.23054 4.30076 4.45170 4.56666 4.65223 4.66818 4.80655 4.81687 4.83767 4.89932 4.92462 5.01800 5.03560 5.13887 5.31001 5.33206 5.41687 5.48800 5.61355 5.71519 5.73986 6.22821 6.27362 6.57340 7.22067 7.33627 8.08766 8.31135 9.24612 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011864 B = 0.002914 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2359.437369 B = 9605.227128 C =11108.656934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.091 3.909 3 C -0.220 4.220 4 S -0.004 6.004 5 C 0.455 3.545 6 O -0.527 6.527 7 N -0.529 5.529 8 C 0.122 3.878 9 C -0.144 4.144 10 C 0.515 3.485 11 O -0.587 6.587 12 N -0.700 5.700 13 C 0.128 3.872 14 C 0.157 3.843 15 N -0.706 5.706 16 C -0.223 4.223 17 H 0.065 0.935 18 C -0.065 4.065 19 N -0.961 5.961 20 Si 0.954 3.046 21 H -0.290 1.290 22 H -0.296 1.296 23 H -0.277 1.277 24 C -0.151 4.151 25 C -0.121 4.121 26 C -0.124 4.124 27 H 0.102 0.898 28 H 0.117 0.883 29 H 0.077 0.923 30 H 0.232 0.768 31 H 0.068 0.932 32 H 0.127 0.873 33 H 0.137 0.863 34 H 0.083 0.917 35 H 0.408 0.592 36 H 0.077 0.923 37 H 0.025 0.975 38 H 0.377 0.623 39 H 0.249 0.751 40 H 0.096 0.904 41 H 0.044 0.956 42 H 0.058 0.942 43 H 0.087 0.913 44 H 0.066 0.934 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.154 21.480 -9.257 26.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.018 4.018 3 C -0.357 4.357 4 S 0.239 5.761 5 C 0.139 3.861 6 O -0.411 6.411 7 N -0.249 5.249 8 C -0.003 4.003 9 C -0.184 4.184 10 C 0.301 3.699 11 O -0.468 6.468 12 N -0.348 5.348 13 C 0.002 3.998 14 C 0.065 3.935 15 N -0.346 5.346 16 C -0.355 4.355 17 H 0.083 0.917 18 C -0.258 4.258 19 N -0.611 5.611 20 Si 0.784 3.216 21 H -0.217 1.217 22 H -0.222 1.222 23 H -0.203 1.203 24 C -0.191 4.191 25 C -0.159 4.159 26 C -0.161 4.161 27 H 0.120 0.880 28 H 0.136 0.864 29 H 0.095 0.905 30 H 0.249 0.751 31 H 0.087 0.913 32 H 0.145 0.855 33 H 0.155 0.845 34 H 0.101 0.899 35 H 0.243 0.757 36 H 0.095 0.905 37 H 0.044 0.956 38 H 0.210 0.790 39 H 0.058 0.942 40 H 0.114 0.886 41 H 0.063 0.937 42 H 0.077 0.923 43 H 0.105 0.895 44 H 0.085 0.915 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -11.603 21.034 -10.070 26.047 hybrid contribution 0.709 -1.928 0.514 2.117 sum -10.894 19.106 -9.555 23.980 Atomic orbital electron populations 1.20992 0.83619 1.05849 1.05505 1.20090 0.97555 0.83720 1.00479 1.25461 0.90319 1.02787 1.17161 1.85172 1.11709 0.98880 1.80303 1.22136 0.84456 0.96485 0.83027 1.90971 1.50254 1.44524 1.55366 1.46201 1.05793 1.08755 1.64183 1.21514 1.00087 0.82003 0.96734 1.21863 1.02627 0.95059 0.98865 1.20671 0.78313 0.87432 0.83468 1.90668 1.56082 1.67494 1.32558 1.45760 1.59793 1.20775 1.08520 1.21699 0.95972 0.83480 0.98636 1.21146 0.86246 0.96456 0.89623 1.42115 1.22188 1.34785 1.35491 1.19251 0.97025 1.03780 1.15486 0.91681 1.25302 0.99000 1.01410 1.00096 1.69745 1.21124 1.40494 1.29775 0.85508 0.78578 0.80459 0.77026 1.21727 1.22200 1.20346 1.23377 0.98342 0.98204 0.99145 1.22589 1.00561 0.96169 0.96554 1.23093 0.97641 0.96241 0.99167 0.87965 0.86410 0.90461 0.75139 0.91294 0.85498 0.84535 0.89860 0.75718 0.90533 0.95601 0.78971 0.94218 0.88590 0.93714 0.92312 0.89466 0.91496 0.87246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.48 9.69 71.24 0.69 0.21 16 2 C 0.09 1.14 6.59 40.71 0.27 1.41 16 3 C -0.22 -2.37 11.24 66.67 0.75 -1.62 16 4 S 0.00 -0.07 22.97 -56.49 -1.30 -1.37 16 5 C 0.46 12.82 8.27 129.87 1.07 13.90 16 6 O -0.53 -20.10 17.55 -4.74 -0.08 -20.18 16 7 N -0.53 -11.18 2.60 -643.44 -1.68 -12.85 16 8 C 0.12 2.79 4.56 86.38 0.39 3.18 16 9 C -0.14 -3.30 6.02 29.85 0.18 -3.12 16 10 C 0.51 15.78 7.83 87.66 0.69 16.46 16 11 O -0.59 -21.88 15.98 -3.02 -0.05 -21.93 16 12 N -0.70 -21.71 5.42 -463.04 -2.51 -24.22 16 13 C 0.13 4.45 5.08 86.38 0.44 4.88 16 14 C 0.16 5.40 0.80 4.13 0.00 5.40 16 15 N -0.71 -32.29 5.18 -300.97 -1.56 -33.85 16 16 C -0.22 -11.95 9.04 84.03 0.76 -11.19 16 17 H 0.07 3.49 7.83 -2.91 -0.02 3.47 16 18 C -0.07 -3.70 5.50 84.86 0.47 -3.23 16 19 N -0.96 -57.29 13.07 21.65 0.28 -57.01 16 20 Si 0.95 47.20 29.55 68.60 2.03 49.23 16 21 H -0.29 -14.45 7.11 99.48 0.71 -13.74 16 22 H -0.30 -14.77 7.11 99.48 0.71 -14.06 16 23 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 24 C -0.15 -4.75 7.29 31.18 0.23 -4.52 16 25 C -0.12 -3.30 8.00 31.18 0.25 -3.05 16 26 C -0.12 -3.19 7.05 31.12 0.22 -2.97 16 27 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 28 H 0.12 -0.03 8.10 -2.39 -0.02 -0.05 16 29 H 0.08 0.47 6.18 -2.39 -0.01 0.45 16 30 H 0.23 0.53 8.06 -2.91 -0.02 0.51 16 31 H 0.07 2.08 7.76 -2.39 -0.02 2.06 16 32 H 0.13 2.25 6.07 -2.39 -0.01 2.24 16 33 H 0.14 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.41 11.70 8.31 -92.71 -0.77 10.93 16 36 H 0.08 2.33 8.02 -2.39 -0.02 2.31 16 37 H 0.03 1.11 7.80 -2.39 -0.02 1.09 16 38 H 0.38 18.48 7.87 -92.71 -0.73 17.75 16 39 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 40 H 0.10 2.50 8.01 -2.39 -0.02 2.48 16 41 H 0.04 1.67 7.87 -2.39 -0.02 1.65 16 42 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 43 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.07 1.75 8.09 -2.39 -0.02 1.73 16 45 H 0.11 2.19 8.10 -2.39 -0.02 2.17 16 Total: -1.00 -76.90 387.71 1.07 -75.83 By element: Atomic # 1 Polarization: 31.08 SS G_CDS: -0.47 Total: 30.60 kcal Atomic # 6 Polarization: 9.33 SS G_CDS: 6.41 Total: 15.74 kcal Atomic # 7 Polarization: -122.47 SS G_CDS: -5.46 Total: -127.93 kcal Atomic # 8 Polarization: -41.98 SS G_CDS: -0.13 Total: -42.11 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 2.03 Total: 49.23 kcal Atomic # 16 Polarization: -0.07 SS G_CDS: -1.30 Total: -1.37 kcal Total: -76.90 1.07 -75.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724782343.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.937 kcal (2) G-P(sol) polarization free energy of solvation -76.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds