Wall clock time and date at job start Tue Mar 31 2020 22:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32563 * 121.64548 * 2 1 4 4 S 1.77232 * 105.31939 * 180.02562 * 3 2 1 5 5 C 1.72214 * 94.84474 * 359.81363 * 4 3 2 6 6 O 1.21828 * 127.05508 * 180.20047 * 5 4 3 7 7 N 1.34240 * 105.88541 * 0.32069 * 5 4 3 8 8 C 1.46500 * 121.38024 * 179.88066 * 7 5 4 9 9 C 1.52997 * 109.46908 * 269.71925 * 8 7 5 10 10 C 1.50697 * 109.47010 * 179.97438 * 9 8 7 11 11 O 1.21284 * 120.00330 * 359.97438 * 10 9 8 12 12 N 1.34776 * 120.00282 * 180.02562 * 10 9 8 13 13 C 1.46500 * 120.00180 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.47109 * 179.97438 * 13 12 10 15 15 H 1.09005 * 110.77671 * 51.76038 * 14 13 12 16 16 C 1.55156 * 110.71903 * 174.99655 * 14 13 12 17 17 C 1.54906 * 101.61451 * 153.84569 * 16 14 13 18 18 N 1.47471 * 104.81210 * 323.04512 * 17 16 14 19 19 C 1.36936 * 125.62644 * 204.04433 * 18 17 16 20 20 H 1.08001 * 119.99967 * 180.02562 * 19 18 17 21 21 C 1.38816 * 120.00461 * 0.03195 * 19 18 17 22 22 N 1.31616 * 119.99418 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00126 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47127 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47089 * 119.99521 * 23 21 19 26 26 H 1.48496 * 109.46839 * 239.99358 * 23 21 19 27 27 C 1.47017 * 108.71970 * 24.07007 * 18 17 16 28 28 H 1.08996 * 109.47006 * 269.97470 * 1 2 3 29 29 H 1.08998 * 109.47371 * 29.97370 * 1 2 3 30 30 H 1.08999 * 109.47083 * 149.97161 * 1 2 3 31 31 H 1.07998 * 127.34022 * 0.03092 * 3 2 1 32 32 H 1.08995 * 109.47203 * 149.71816 * 8 7 5 33 33 H 1.09000 * 109.46679 * 29.71720 * 8 7 5 34 34 H 1.09002 * 109.47209 * 60.00328 * 9 8 7 35 35 H 1.09000 * 109.47283 * 299.99425 * 9 8 7 36 36 H 0.96999 * 119.99759 * 0.02562 * 12 10 9 37 37 H 1.08995 * 109.47203 * 59.99832 * 13 12 10 38 38 H 1.08998 * 109.47151 * 299.99519 * 13 12 10 39 39 H 1.09002 * 111.00677 * 271.94153 * 16 14 13 40 40 H 1.09002 * 111.00564 * 35.75411 * 16 14 13 41 41 H 1.09008 * 110.36753 * 81.85112 * 17 16 14 42 42 H 1.09001 * 110.37094 * 204.16995 * 17 16 14 43 43 H 0.97005 * 119.99622 * 180.02562 * 22 21 19 44 44 H 1.08998 * 109.88206 * 239.55467 * 27 18 17 45 45 H 1.09004 * 110.01118 * 118.46560 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2025 1.1285 0.0000 4 16 3.9034 0.6303 -0.0008 5 6 3.5606 -1.0574 0.0046 6 8 4.3673 -1.9703 0.0095 7 7 2.2222 -1.1605 -0.0006 8 6 1.5576 -2.4661 -0.0008 9 6 1.3258 -2.9201 -1.4434 10 6 0.6428 -4.2634 -1.4436 11 8 0.3688 -4.8046 -0.3933 12 7 0.3373 -4.8639 -2.6108 13 6 -0.3272 -6.1696 -2.6110 14 6 -0.5589 -6.6237 -4.0536 15 1 0.3656 -6.5715 -4.6286 16 6 -1.1474 -8.0589 -4.0894 17 6 -1.9095 -8.0499 -5.4380 18 7 -2.4739 -6.6915 -5.5430 19 6 -3.5696 -6.3381 -6.2844 20 1 -3.9054 -5.3117 -6.2962 21 6 -4.2487 -7.2990 -7.0209 22 7 -3.8392 -8.5497 -7.0069 23 14 -5.7438 -6.8169 -8.0317 24 1 -5.9964 -5.3616 -7.8788 25 1 -5.4958 -7.1291 -9.4622 26 1 -6.9280 -7.5770 -7.5573 27 6 -1.6653 -5.7798 -4.7206 28 1 -0.3633 -0.0005 1.0276 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3633 -0.8897 -0.5143 31 1 1.8152 2.1367 0.0005 32 1 0.5999 -2.3863 0.5134 33 1 2.1862 -3.1937 0.5126 34 1 2.2836 -2.9999 -1.9575 35 1 0.6972 -2.1925 -1.9567 36 1 0.5574 -4.4316 -3.4508 37 1 -1.2852 -6.0898 -2.0973 38 1 0.3011 -6.8971 -2.0972 39 1 -0.3541 -8.8065 -4.0939 40 1 -1.8303 -8.2221 -3.2557 41 1 -1.2230 -8.2400 -6.2631 42 1 -2.7069 -8.7930 -5.4282 43 1 -4.3135 -9.2212 -7.5218 44 1 -2.2900 -5.3171 -3.9567 45 1 -1.2165 -5.0099 -5.3485 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731851764.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:19 Heat of formation + Delta-G solvation = -18.903346 kcal Electronic energy + Delta-G solvation = -26498.410777 eV Core-core repulsion = 22643.434152 eV Total energy + Delta-G solvation = -3854.976625 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.46398 -39.79113 -37.94740 -37.71874 -34.79382 -33.79465 -32.59031 -31.69174 -29.94678 -28.82572 -28.03024 -25.88889 -25.07129 -23.79344 -23.03542 -20.93638 -20.58420 -20.03136 -19.63954 -18.46059 -17.83849 -16.99389 -16.83009 -16.44888 -16.03992 -15.89717 -15.34290 -15.02072 -14.71488 -14.57844 -14.16367 -14.10058 -13.87544 -13.70926 -13.50110 -13.13247 -12.82370 -12.66437 -12.56100 -11.84824 -11.80565 -11.76355 -11.67383 -11.55553 -11.54291 -10.99739 -10.86011 -10.50966 -10.42182 -10.21309 -10.11196 -10.05312 -9.93737 -9.79065 -9.55187 -9.08300 -8.69943 -8.34892 -6.88456 -5.70173 -3.12061 0.58383 0.97838 1.40546 1.75929 2.30940 2.47088 3.13149 3.36097 3.41320 3.44054 4.05653 4.30607 4.35657 4.44073 4.59681 4.63241 4.86750 4.94246 4.98693 5.07978 5.08723 5.18159 5.19297 5.26968 5.34626 5.47671 5.49680 5.64661 5.72182 5.82510 6.00609 6.04172 6.28817 6.32945 6.33288 6.49213 6.53765 6.65632 6.84400 6.94074 7.38925 7.46759 7.58159 7.81126 8.07031 8.31642 9.17259 9.78295 10.42877 11.33880 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019489 B = 0.001949 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.333049 B =14360.292832 C =15194.248140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.104 3.896 3 C -0.240 4.240 4 S -0.002 6.002 5 C 0.479 3.521 6 O -0.470 6.470 7 N -0.533 5.533 8 C 0.117 3.883 9 C -0.160 4.160 10 C 0.518 3.482 11 O -0.544 6.544 12 N -0.722 5.722 13 C 0.132 3.868 14 C -0.115 4.115 15 H 0.076 0.924 16 C -0.135 4.135 17 C 0.151 3.849 18 N -0.605 5.605 19 C -0.223 4.223 20 H 0.077 0.923 21 C -0.012 4.012 22 N -0.922 5.922 23 Si 0.915 3.085 24 H -0.280 1.280 25 H -0.290 1.290 26 H -0.290 1.290 27 C 0.142 3.858 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.192 0.808 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.403 0.597 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.012 0.988 42 H 0.107 0.893 43 H 0.252 0.748 44 H 0.023 0.977 45 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.589 18.457 14.405 26.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.006 4.006 3 C -0.378 4.378 4 S 0.240 5.760 5 C 0.161 3.839 6 O -0.349 6.349 7 N -0.254 5.254 8 C -0.008 4.008 9 C -0.201 4.201 10 C 0.303 3.697 11 O -0.422 6.422 12 N -0.372 5.372 13 C 0.009 3.991 14 C -0.134 4.134 15 H 0.094 0.906 16 C -0.175 4.175 17 C 0.027 3.973 18 N -0.331 5.331 19 C -0.352 4.352 20 H 0.095 0.905 21 C -0.207 4.207 22 N -0.570 5.570 23 Si 0.746 3.254 24 H -0.205 1.205 25 H -0.217 1.217 26 H -0.217 1.217 27 C 0.016 3.984 28 H 0.106 0.894 29 H 0.111 0.889 30 H 0.098 0.902 31 H 0.209 0.791 32 H 0.122 0.878 33 H 0.123 0.877 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.237 0.763 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.030 0.970 42 H 0.125 0.875 43 H 0.063 0.937 44 H 0.041 0.959 45 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 12.920 18.031 15.013 26.785 hybrid contribution -1.749 -0.207 -1.126 2.090 sum 11.171 17.824 13.887 25.206 Atomic orbital electron populations 1.20836 0.86424 1.04854 1.04279 1.19509 0.95971 0.84843 1.00311 1.24912 0.93109 1.01365 1.18402 1.85215 1.08597 1.01225 1.80926 1.21639 0.83798 0.95745 0.82718 1.90992 1.48597 1.42391 1.52934 1.46160 1.06380 1.07863 1.64984 1.21612 1.00051 0.82308 0.96818 1.22002 1.03180 0.96115 0.98769 1.20198 0.78912 0.86539 0.84094 1.90728 1.54167 1.66137 1.31181 1.46087 1.60798 1.21976 1.08370 1.21499 0.97349 0.82903 0.97391 1.22452 0.99194 0.98175 0.93618 0.90553 1.23008 0.99308 0.93463 1.01677 1.21949 0.96420 0.89273 0.89688 1.44524 1.30726 1.03981 1.53856 1.19112 1.01987 0.94187 1.19882 0.90497 1.24805 0.99738 0.95615 1.00585 1.69808 1.41434 1.00678 1.45102 0.85993 0.82289 0.77492 0.79674 1.20547 1.21730 1.21694 1.21320 0.91153 0.92686 0.93235 0.89408 0.88911 0.90226 0.79087 0.87780 0.87700 0.88131 0.88094 0.76323 0.91072 0.91518 0.92093 0.91814 0.96974 0.87497 0.93731 0.95885 0.96480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.38 9.30 36.01 0.33 -0.05 16 2 C 0.10 0.65 6.59 -82.51 -0.54 0.10 16 3 C -0.24 -1.35 11.24 28.82 0.32 -1.03 16 4 S 0.00 -0.02 22.97 -107.50 -2.47 -2.49 16 5 C 0.48 5.25 8.27 53.82 0.45 5.70 16 6 O -0.47 -6.73 17.55 5.07 0.09 -6.64 16 7 N -0.53 -4.57 2.60 -117.28 -0.31 -4.87 16 8 C 0.12 1.03 4.27 -4.04 -0.02 1.01 16 9 C -0.16 -1.33 5.93 -27.89 -0.17 -1.50 16 10 C 0.52 6.06 7.83 -10.99 -0.09 5.97 16 11 O -0.54 -8.28 15.98 5.55 0.09 -8.19 16 12 N -0.72 -8.33 5.47 -60.29 -0.33 -8.66 16 13 C 0.13 1.83 5.02 -4.04 -0.02 1.81 16 14 C -0.12 -1.83 2.96 -88.79 -0.26 -2.09 16 15 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 16 C -0.14 -2.44 6.53 -24.58 -0.16 -2.60 16 17 C 0.15 3.59 5.89 -2.50 -0.01 3.57 16 18 N -0.60 -15.12 3.40 -170.04 -0.58 -15.69 16 19 C -0.22 -6.12 10.27 -15.06 -0.15 -6.28 16 20 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 21 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 22 N -0.92 -26.56 10.09 55.49 0.56 -26.00 16 23 Si 0.91 21.75 29.55 -169.99 -5.02 16.73 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 27 C 0.14 2.78 6.75 -3.07 -0.02 2.76 16 28 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 29 H 0.09 0.19 8.10 -51.93 -0.42 -0.23 16 30 H 0.08 0.32 6.22 -51.93 -0.32 0.00 16 31 H 0.19 0.52 8.06 -52.49 -0.42 0.10 16 32 H 0.10 0.79 6.79 -51.93 -0.35 0.44 16 33 H 0.10 1.12 7.75 -51.93 -0.40 0.72 16 34 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.10 0.64 7.52 -51.93 -0.39 0.24 16 36 H 0.40 3.86 8.47 -40.82 -0.35 3.51 16 37 H 0.07 1.09 7.93 -51.93 -0.41 0.68 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.06 1.15 8.05 -51.93 -0.42 0.73 16 41 H 0.01 0.31 8.14 -51.92 -0.42 -0.12 16 42 H 0.11 2.87 5.88 -51.93 -0.31 2.56 16 43 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 44 H 0.02 0.46 7.68 -51.93 -0.40 0.06 16 45 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 LS Contribution 380.85 15.07 5.74 5.74 Total: -1.00 -33.97 380.85 -9.36 -43.34 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -6.70 Total: -0.19 kcal Atomic # 6 Polarization: 7.37 SS G_CDS: -0.44 Total: 6.94 kcal Atomic # 7 Polarization: -54.57 SS G_CDS: -0.65 Total: -55.23 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: 0.18 Total: -14.84 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: -0.02 SS G_CDS: -2.47 Total: -2.49 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.97 -9.36 -43.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731851764.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.434 kcal (2) G-P(sol) polarization free energy of solvation -33.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds