Wall clock time and date at job start Tue Mar 31 2020 22:29:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50699 * 1
3 3 S 1.77228 * 127.34042 * 2 1
4 4 C 1.72216 * 94.84575 * 179.81330 * 3 2 1
5 5 O 1.21823 * 127.05558 * 180.20342 * 4 3 2
6 6 N 1.34244 * 105.88186 * 0.32348 * 4 3 2
7 7 C 1.46499 * 121.37736 * 179.87805 * 6 4 3
8 8 C 1.50704 * 109.46952 * 269.71990 * 7 6 4
9 9 O 1.21279 * 120.00241 * 0.02562 * 8 7 6
10 10 N 1.34782 * 119.99771 * 180.02562 * 8 7 6
11 11 C 1.46502 * 119.99960 * 180.02562 * 10 8 7
12 12 C 1.52997 * 109.47108 * 176.08888 * 11 10 8
13 13 N 1.46504 * 112.84798 * 294.03452 * 12 11 10
14 14 C 1.36933 * 119.99837 * 294.81603 * 13 12 11
15 15 H 1.07996 * 120.00658 * 353.93950 * 14 13 12
16 16 C 1.38820 * 119.99788 * 173.94044 * 14 13 12
17 17 N 1.31614 * 119.99798 * 0.02562 * 16 14 13
18 18 Si 1.86803 * 119.99920 * 180.02562 * 16 14 13
19 19 H 1.48491 * 109.46846 * 59.99934 * 18 16 14
20 20 H 1.48495 * 109.46845 * 180.02562 * 18 16 14
21 21 H 1.48497 * 109.46816 * 300.00065 * 18 16 14
22 22 C 1.53783 * 113.61385 * 162.83619 * 12 11 10
23 23 C 1.53956 * 87.01988 * 220.05010 * 22 12 11
24 24 C 1.53780 * 87.11225 * 25.36289 * 23 22 12
25 25 C 1.32567 * 127.33767 * 180.02562 * 2 1 3
26 26 C 1.50693 * 121.64566 * 359.97219 * 25 2 1
27 27 H 1.09002 * 109.47284 * 269.99816 * 1 2 3
28 28 H 1.09001 * 109.47319 * 29.99212 * 1 2 3
29 29 H 1.08997 * 109.47545 * 149.99360 * 1 2 3
30 30 H 1.09001 * 109.47025 * 29.71807 * 7 6 4
31 31 H 1.08994 * 109.47365 * 149.72035 * 7 6 4
32 32 H 0.96994 * 119.99845 * 359.97438 * 10 8 7
33 33 H 1.08997 * 109.47073 * 296.08983 * 11 10 8
34 34 H 1.09004 * 109.46714 * 56.09294 * 11 10 8
35 35 H 0.97004 * 119.99768 * 114.82750 * 13 12 11
36 36 H 0.97003 * 119.99509 * 180.02562 * 17 16 14
37 37 H 1.09003 * 113.61402 * 334.57195 * 22 12 11
38 38 H 1.09007 * 113.61259 * 105.47007 * 22 12 11
39 39 H 1.09004 * 113.53304 * 270.81288 * 23 22 12
40 40 H 1.08998 * 113.66772 * 139.93449 * 23 22 12
41 41 H 1.08996 * 113.61561 * 220.09175 * 24 23 22
42 42 H 1.09000 * 113.61791 * 89.18400 * 24 23 22
43 43 H 1.08996 * 109.47719 * 270.02263 * 26 25 2
44 44 H 1.09003 * 109.47504 * 30.02533 * 26 25 2
45 45 H 1.09004 * 109.47367 * 150.02730 * 26 25 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 16 2.5820 1.4090 0.0000
4 6 4.0345 0.4839 0.0056
5 8 5.1759 0.9095 0.0112
6 7 3.6507 -0.8025 -0.0002
7 6 4.6312 -1.8911 -0.0003
8 6 4.9673 -2.2641 -1.4213
9 8 4.4402 -1.6781 -2.3430
10 7 5.8538 -3.2490 -1.6677
11 6 6.1810 -3.6113 -3.0490
12 6 7.2754 -4.6805 -3.0502
13 7 8.5525 -4.1878 -2.5282
14 6 9.2363 -3.2111 -3.2016
15 1 8.8859 -2.8732 -4.1656
16 6 10.3802 -2.6552 -2.6451
17 7 10.8076 -3.0673 -1.4705
18 14 11.3127 -1.3222 -3.5634
19 1 10.4194 -0.1572 -3.7861
20 1 12.4887 -0.8989 -2.7615
21 1 11.7715 -1.8517 -4.8727
22 6 7.4039 -5.4288 -4.3875
23 6 7.6173 -6.7086 -3.5588
24 6 6.8316 -6.0169 -2.4322
25 6 2.3110 -1.0540 -0.0005
26 6 1.7706 -2.4607 -0.0005
27 1 -0.3634 0.0000 1.0277
28 1 -0.3634 0.8900 -0.5137
29 1 -0.3634 -0.8899 -0.5139
30 1 5.5357 -1.5654 0.5135
31 1 4.2132 -2.7567 0.5134
32 1 6.2756 -3.7174 -0.9305
33 1 5.2911 -4.0017 -3.5427
34 1 6.5347 -2.7287 -3.5820
35 1 8.9137 -4.5536 -1.7056
36 1 11.6067 -2.6786 -1.0815
37 1 6.4850 -5.4364 -4.9737
38 1 8.2767 -5.1344 -4.9705
39 1 8.6618 -6.8973 -3.3105
40 1 7.1138 -7.5842 -3.9684
41 1 7.2429 -6.1966 -1.4390
42 1 5.7559 -6.1855 -2.4829
43 1 1.6402 -2.8000 1.0271
44 1 0.8095 -2.4807 -0.5143
45 1 2.4711 -3.1191 -0.5143
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001733727901.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:29:19
Heat of formation + Delta-G solvation = -5.441862 kcal
Electronic energy + Delta-G solvation = -27767.834178 eV
Core-core repulsion = 23913.441286 eV
Total energy + Delta-G solvation = -3854.392891 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 1.40 seconds
Orbital eigenvalues (eV)
-41.24613 -39.41327 -38.34415 -37.66158 -34.03845 -33.69613 -33.28860 -30.56216
-30.02284 -29.55480 -27.19376 -25.36511 -25.13114 -23.97722 -23.41723 -21.74338
-20.44826 -19.78665 -18.38324 -18.29972 -17.48274 -17.19849 -16.93304 -15.75702
-15.71542 -15.24204 -15.13970 -14.73433 -14.36930 -14.13848 -14.06948 -13.99570
-13.74107 -13.44355 -13.25360 -13.16425 -12.93475 -12.74659 -12.51849 -12.32712
-11.96820 -11.77127 -11.47869 -11.29100 -11.03066 -11.02772 -10.83725 -10.41291
-10.28515 -10.18043 -10.08513 -9.96861 -9.75159 -9.53823 -9.31209 -8.90269
-8.64178 -7.91475 -7.07467 -5.84664 -3.14668 0.90903 1.31195 1.67929
2.11363 2.63200 2.77262 3.43179 3.48132 3.49478 3.50953 4.30545
4.53118 4.62993 4.77387 4.82603 4.95676 5.06114 5.08488 5.11334
5.13690 5.20141 5.23178 5.31899 5.39484 5.44519 5.46994 5.59149
5.64891 5.73646 5.95467 6.04288 6.06990 6.12685 6.25653 6.31858
6.46669 6.63984 6.64273 6.79886 6.89949 6.98581 7.31157 7.67900
7.78640 8.34000 8.42910 9.45752 9.97633 10.32686 11.37178
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.012582 B = 0.003380 C = 0.002830
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2224.900914 B = 8283.101259 C = 9890.413737
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.058 4.058
2 C -0.213 4.213
3 S -0.003 6.003
4 C 0.489 3.511
5 O -0.464 6.464
6 N -0.513 5.513
7 C 0.080 3.920
8 C 0.495 3.505
9 O -0.538 6.538
10 N -0.697 5.697
11 C 0.121 3.879
12 C 0.174 3.826
13 N -0.699 5.699
14 C -0.239 4.239
15 H 0.070 0.930
16 C -0.005 4.005
17 N -0.930 5.930
18 Si 0.904 3.096
19 H -0.285 1.285
20 H -0.291 1.291
21 H -0.285 1.285
22 C -0.151 4.151
23 C -0.128 4.128
24 C -0.144 4.144
25 C 0.109 3.891
26 C -0.099 4.099
27 H 0.073 0.927
28 H 0.072 0.928
29 H 0.077 0.923
30 H 0.126 0.874
31 H 0.120 0.880
32 H 0.401 0.599
33 H 0.054 0.946
34 H 0.070 0.930
35 H 0.386 0.614
36 H 0.256 0.744
37 H 0.068 0.932
38 H 0.075 0.925
39 H 0.081 0.919
40 H 0.054 0.946
41 H 0.065 0.935
42 H 0.077 0.923
43 H 0.085 0.915
44 H 0.090 0.910
45 H 0.074 0.926
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.896 -3.447 5.976 22.958
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.117 4.117
2 C -0.333 4.333
3 S 0.240 5.760
4 C 0.171 3.829
5 O -0.342 6.342
6 N -0.233 5.233
7 C -0.050 4.050
8 C 0.278 3.722
9 O -0.415 6.415
10 N -0.347 5.347
11 C -0.005 4.005
12 C 0.081 3.919
13 N -0.339 5.339
14 C -0.370 4.370
15 H 0.088 0.912
16 C -0.202 4.202
17 N -0.578 5.578
18 Si 0.735 3.265
19 H -0.211 1.211
20 H -0.216 1.216
21 H -0.212 1.212
22 C -0.191 4.191
23 C -0.165 4.165
24 C -0.182 4.182
25 C -0.002 4.002
26 C -0.159 4.159
27 H 0.092 0.908
28 H 0.090 0.910
29 H 0.096 0.904
30 H 0.143 0.857
31 H 0.137 0.863
32 H 0.235 0.765
33 H 0.072 0.928
34 H 0.088 0.912
35 H 0.221 0.779
36 H 0.066 0.934
37 H 0.086 0.914
38 H 0.093 0.907
39 H 0.100 0.900
40 H 0.073 0.927
41 H 0.084 0.916
42 H 0.095 0.905
43 H 0.104 0.896
44 H 0.109 0.891
45 H 0.093 0.907
Dipole moment (debyes) X Y Z Total
from point charges -21.587 -1.262 5.219 22.245
hybrid contribution 1.475 -0.842 0.035 1.698
sum -20.113 -2.103 5.255 20.894
Atomic orbital electron populations
1.20075 0.85843 1.03231 1.02579 1.23382 0.99520 0.92143 1.18289
1.84986 0.98075 1.11334 1.81603 1.21468 0.94556 0.84641 0.82282
1.91013 1.19169 1.71502 1.52487 1.45532 1.05667 1.07057 1.65071
1.21734 0.94907 0.91263 0.97050 1.20556 0.80426 0.80481 0.90748
1.90718 1.52941 1.52210 1.45621 1.45661 1.42595 1.36266 1.10197
1.21905 0.97052 1.00146 0.81402 1.20815 0.87279 0.89384 0.94455
1.42043 1.18174 1.44969 1.28741 1.19030 1.05194 1.12197 1.00587
0.91243 1.24712 0.98949 0.99784 0.96752 1.69630 1.25626 1.45435
1.17092 0.86316 0.79342 0.82121 0.78761 1.21110 1.21637 1.21189
1.23345 1.01401 0.96745 0.97641 1.22655 1.00545 0.96178 0.97150
1.23148 0.99389 0.96999 0.98709 1.19165 0.81913 0.98086 1.01014
1.20757 1.02280 0.89309 1.03506 0.90812 0.90952 0.90435 0.85657
0.86255 0.76450 0.92806 0.91157 0.77913 0.93396 0.91356 0.90663
0.90010 0.92705 0.91620 0.90476 0.89633 0.89112 0.90705
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 27.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.06 -0.37 10.10 36.00 0.36 -0.01 16
2 C -0.21 -2.22 6.72 -36.22 -0.24 -2.46 16
3 S 0.00 -0.04 22.97 -107.50 -2.47 -2.51 16
4 C 0.49 8.24 8.27 53.82 0.45 8.69 16
5 O -0.46 -9.60 17.55 5.08 0.09 -9.51 16
6 N -0.51 -7.17 2.09 -118.57 -0.25 -7.42 16
7 C 0.08 1.02 5.47 -5.19 -0.03 0.99 16
8 C 0.49 8.19 7.63 -10.98 -0.08 8.11 16
9 O -0.54 -11.02 16.43 5.56 0.09 -10.93 16
10 N -0.70 -11.17 5.45 -60.29 -0.33 -11.50 16
11 C 0.12 2.16 5.03 -4.04 -0.02 2.14 16
12 C 0.17 3.09 0.79 -131.00 -0.10 2.98 16
13 N -0.70 -15.82 5.18 -46.48 -0.24 -16.06 16
14 C -0.24 -6.34 9.06 -15.06 -0.14 -6.47 16
15 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16
16 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16
17 N -0.93 -27.12 13.07 55.49 0.73 -26.40 16
18 Si 0.90 22.73 29.55 -169.99 -5.02 17.71 16
19 H -0.28 -7.29 7.11 56.52 0.40 -6.89 16
20 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16
21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16
22 C -0.15 -2.50 7.29 -25.83 -0.19 -2.69 16
23 C -0.13 -1.89 8.00 -25.83 -0.21 -2.10 16
24 C -0.14 -2.05 7.08 -25.92 -0.18 -2.23 16
25 C 0.11 1.19 6.59 -82.51 -0.54 0.65 16
26 C -0.10 -0.70 9.07 36.00 0.33 -0.37 16
27 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16
28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16
29 H 0.08 0.38 6.77 -51.93 -0.35 0.03 16
30 H 0.13 1.68 7.80 -51.93 -0.40 1.27 16
31 H 0.12 0.98 6.83 -51.93 -0.35 0.62 16
32 H 0.40 5.75 8.31 -40.82 -0.34 5.41 16
33 H 0.05 0.88 8.06 -51.93 -0.42 0.46 16
34 H 0.07 1.53 7.85 -51.93 -0.41 1.12 16
35 H 0.39 9.29 7.87 -40.82 -0.32 8.97 16
36 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16
37 H 0.07 0.99 8.04 -51.93 -0.42 0.58 16
38 H 0.07 1.42 7.86 -51.93 -0.41 1.02 16
39 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16
40 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16
41 H 0.07 0.92 8.09 -51.93 -0.42 0.50 16
42 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16
43 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16
44 H 0.09 0.50 6.69 -51.93 -0.35 0.15 16
45 H 0.07 0.59 6.70 -51.93 -0.35 0.24 16
LS Contribution 386.03 15.07 5.82 5.82
Total: -1.00 -34.93 386.03 -8.90 -43.84
By element:
Atomic # 1 Polarization: 16.63 SS G_CDS: -6.62 Total: 10.01 kcal
Atomic # 6 Polarization: 7.67 SS G_CDS: -0.70 Total: 6.97 kcal
Atomic # 7 Polarization: -61.29 SS G_CDS: -0.09 Total: -61.38 kcal
Atomic # 8 Polarization: -20.63 SS G_CDS: 0.18 Total: -20.45 kcal
Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal
Atomic # 16 Polarization: -0.04 SS G_CDS: -2.47 Total: -2.51 kcal
Total LS contribution 5.82 Total: 5.82 kcal
Total: -34.93 -8.90 -43.84 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001733727901.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 38.393 kcal
(2) G-P(sol) polarization free energy of solvation -34.931 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.462 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.904 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.835 kcal
(6) G-S(sol) free energy of system = (1) + (5) -5.442 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.40 seconds