Wall clock time and date at job start Tue Mar 31 2020 22:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30251 * 125.62174 * 2 1 4 4 C 1.34482 * 108.69964 * 180.14757 * 3 2 1 5 5 C 1.50697 * 126.16314 * 179.82707 * 4 3 2 6 6 N 1.46899 * 109.47053 * 274.68978 * 5 4 3 7 7 C 1.46901 * 110.99938 * 180.02562 * 6 5 4 8 8 H 1.08995 * 110.89137 * 328.88523 * 7 6 5 9 9 C 1.55132 * 110.90299 * 92.97953 * 7 6 5 10 10 N 1.47431 * 104.71955 * 155.27732 * 9 7 6 11 11 C 1.34773 * 125.64646 * 155.81909 * 10 9 7 12 12 O 1.21283 * 120.00144 * 359.71291 * 11 10 9 13 13 C 1.50705 * 119.99721 * 179.71335 * 11 10 9 14 14 S 1.81000 * 109.46942 * 180.02562 * 13 11 10 15 15 C 1.76195 * 100.00017 * 180.02562 * 14 13 11 16 16 H 1.08004 * 120.00294 * 359.97438 * 15 14 13 17 17 C 1.38802 * 120.00153 * 180.02562 * 15 14 13 18 18 N 1.31632 * 120.00093 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 120.00020 * 359.97438 * 17 15 14 20 20 H 1.48506 * 109.47297 * 90.00077 * 19 17 15 21 21 H 1.48503 * 109.47261 * 330.00257 * 19 17 15 22 22 H 1.48500 * 109.47454 * 210.00251 * 19 17 15 23 23 C 1.47022 * 108.70107 * 335.55038 * 10 9 7 24 24 C 1.54317 * 107.27411 * 1.28941 * 23 10 9 25 25 H 1.08997 * 110.72161 * 140.73282 * 24 23 10 26 26 C 1.53004 * 110.72053 * 263.83169 * 24 23 10 27 27 C 1.34326 * 107.66526 * 359.56693 * 4 3 2 28 28 O 1.33970 * 125.61518 * 179.66638 * 2 1 3 29 29 H 1.08998 * 109.47543 * 180.31778 * 1 2 3 30 30 H 1.09005 * 109.46811 * 300.31081 * 1 2 3 31 31 H 1.09001 * 109.47394 * 60.30927 * 1 2 3 32 32 H 1.09001 * 109.46586 * 154.69607 * 5 4 3 33 33 H 1.09000 * 109.47360 * 34.68977 * 5 4 3 34 34 H 1.00902 * 110.99998 * 56.05465 * 6 5 4 35 35 H 1.08993 * 110.49897 * 36.43293 * 9 7 6 36 36 H 1.09000 * 110.34260 * 274.03783 * 9 7 6 37 37 H 1.08997 * 109.46935 * 60.00104 * 13 11 10 38 38 H 1.09000 * 109.47082 * 299.99666 * 13 11 10 39 39 H 0.97006 * 119.99745 * 179.97438 * 18 17 15 40 40 H 1.09003 * 109.88009 * 120.71121 * 23 10 9 41 41 H 1.09001 * 109.88122 * 241.71490 * 23 10 9 42 42 H 1.08991 * 109.47553 * 58.54232 * 26 24 23 43 43 H 1.09002 * 109.47127 * 178.54861 * 26 24 23 44 44 H 1.09003 * 109.47065 * 298.54217 * 26 24 23 45 45 H 1.08001 * 126.43948 * 180.23544 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6673 -0.0033 5 6 4.7571 1.5725 -0.0081 6 7 5.0764 1.9552 -1.3899 7 6 6.2489 2.8392 -1.4338 8 1 6.3084 3.4507 -0.5335 9 6 7.5506 2.0222 -1.6448 10 7 8.4941 2.9731 -2.2606 11 6 9.8383 2.8885 -2.2121 12 8 10.3673 1.9723 -1.6191 13 6 10.6840 3.9324 -2.8949 14 16 12.4350 3.5438 -2.6518 15 6 13.1704 4.8850 -3.5263 16 1 12.5459 5.6253 -4.0041 17 6 14.5524 4.9896 -3.6020 18 7 15.1018 5.9913 -4.2557 19 14 15.6327 3.7088 -2.7762 20 1 15.9124 2.6067 -3.7314 21 1 14.9331 3.1652 -1.5844 22 1 16.9114 4.3362 -2.3561 23 6 7.7257 4.0254 -2.9416 24 6 6.2302 3.7251 -2.7075 25 1 5.6748 4.6463 -2.5317 26 6 5.6403 2.9573 -3.8922 27 6 3.5697 -0.6758 0.0043 28 8 2.2872 -1.0891 0.0063 29 1 -0.3634 -1.0276 0.0057 30 1 -0.3633 0.5187 0.8872 31 1 -0.3634 0.5090 -0.8927 32 1 5.6068 1.0484 0.4293 33 1 4.5418 2.4671 0.5762 34 1 4.2818 2.3855 -1.8388 35 1 7.3690 1.1810 -2.3138 36 1 7.9366 1.6706 -0.6880 37 1 10.4663 4.9118 -2.4691 38 1 10.4590 3.9416 -3.9614 39 1 16.0676 6.0646 -4.3083 40 1 7.9784 4.9992 -2.5222 41 1 7.9459 4.0132 -4.0091 42 1 6.1901 2.0267 -4.0322 43 1 4.5919 2.7337 -3.6945 44 1 5.7184 3.5647 -4.7939 45 1 4.4468 -1.3059 0.0078 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733840059.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:00 Heat of formation + Delta-G solvation = -7.665933 kcal Electronic energy + Delta-G solvation = -26153.560098 eV Core-core repulsion = 22299.070764 eV Total energy + Delta-G solvation = -3854.489334 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.71181 -40.19019 -38.08234 -36.12146 -34.62402 -32.91618 -32.42985 -31.98770 -30.20885 -28.80501 -27.50424 -26.71692 -25.66415 -25.40863 -22.74423 -21.96691 -21.46475 -20.05326 -19.43856 -17.81063 -17.46368 -17.15149 -16.75040 -16.47453 -15.84660 -15.42816 -15.08829 -14.99314 -14.73343 -14.59538 -14.49466 -13.82228 -13.71192 -13.61070 -13.25910 -13.13631 -13.09231 -12.86929 -12.79449 -12.58503 -12.41461 -12.14031 -11.90271 -11.53687 -11.29918 -11.25086 -11.10215 -10.99958 -10.96279 -10.86469 -10.59669 -9.85086 -9.51239 -9.19555 -8.99423 -8.88933 -8.52823 -8.48693 -6.91018 -6.28122 -3.99755 1.07129 2.17430 2.37422 2.69788 2.96822 3.19260 3.34105 3.50432 3.51602 3.60950 3.92527 4.08107 4.31268 4.34049 4.37520 4.51764 4.65518 4.71877 4.76535 4.86644 4.99613 5.02185 5.06809 5.10994 5.13890 5.19515 5.22651 5.27154 5.42824 5.46630 5.53671 5.58441 5.66071 5.67678 5.77717 5.78460 5.87025 5.89000 6.03179 6.10492 6.33114 6.59157 6.90774 7.34324 7.60383 7.94914 8.42349 8.45804 9.18137 10.81053 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.031304 B = 0.001865 C = 0.001790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.229756 B =15007.458288 C =15637.985176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.187 3.813 3 N -0.481 5.481 4 C -0.013 4.013 5 C 0.139 3.861 6 N -0.671 5.671 7 C 0.075 3.925 8 H 0.067 0.933 9 C 0.122 3.878 10 N -0.624 5.624 11 C 0.548 3.452 12 O -0.519 6.519 13 C -0.117 4.117 14 S -0.143 6.143 15 C -0.521 4.521 16 H 0.088 0.912 17 C 0.096 3.904 18 N -0.880 5.880 19 Si 0.857 3.143 20 H -0.267 1.267 21 H -0.235 1.235 22 H -0.274 1.274 23 C 0.106 3.894 24 C -0.105 4.105 25 H 0.088 0.912 26 C -0.137 4.137 27 C -0.053 4.053 28 O -0.204 6.204 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.051 0.949 34 H 0.351 0.649 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.271 0.729 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.059 0.941 44 H 0.057 0.943 45 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.436 -9.530 6.874 33.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.020 4.020 3 N -0.212 5.212 4 C -0.133 4.133 5 C 0.010 3.990 6 N -0.304 5.304 7 C -0.036 4.036 8 H 0.085 0.915 9 C -0.002 4.002 10 N -0.361 5.361 11 C 0.336 3.664 12 O -0.393 6.393 13 C -0.268 4.268 14 S 0.084 5.916 15 C -0.668 4.668 16 H 0.106 0.894 17 C -0.113 4.113 18 N -0.517 5.517 19 Si 0.681 3.319 20 H -0.192 1.192 21 H -0.159 1.159 22 H -0.199 1.199 23 C -0.017 4.017 24 C -0.125 4.125 25 H 0.107 0.893 26 C -0.194 4.194 27 C -0.124 4.124 28 O -0.090 6.090 29 H 0.106 0.894 30 H 0.114 0.886 31 H 0.115 0.885 32 H 0.110 0.890 33 H 0.069 0.931 34 H 0.171 0.829 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.083 0.917 43 H 0.078 0.922 44 H 0.076 0.924 45 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -30.280 -10.788 7.576 33.025 hybrid contribution 0.037 0.919 -0.207 0.943 sum -30.242 -9.869 7.369 32.654 Atomic orbital electron populations 1.20244 0.81378 1.04721 1.05046 1.26292 0.96534 0.78688 1.00512 1.70303 1.01720 1.30438 1.18713 1.21544 0.92649 0.92867 1.06202 1.20216 0.91990 0.96455 0.90322 1.60427 1.08044 1.45901 1.16016 1.22756 0.90768 0.92517 0.97518 0.91484 1.22133 0.86965 0.92225 0.98885 1.48367 1.04800 1.27652 1.55319 1.19960 0.80048 0.86379 0.79998 1.90704 1.71160 1.34656 1.42781 1.23253 0.99962 1.00241 1.03336 1.84782 0.95443 1.38857 1.72540 1.22312 0.95067 1.11022 1.38449 0.89396 1.24707 0.97073 0.95399 0.94090 1.69942 1.11677 1.29853 1.40220 0.86737 0.80977 0.81978 0.82176 1.19201 1.15923 1.19941 1.22084 0.89926 0.91581 0.98152 1.22383 0.95571 0.99005 0.95502 0.89331 1.21695 1.00836 1.00569 0.96305 1.24848 0.84755 0.96228 1.06600 1.84465 1.17088 1.37762 1.69712 0.89397 0.88573 0.88510 0.89001 0.93097 0.82872 0.90594 0.90799 0.88580 0.88591 0.91957 0.91082 0.90780 0.91726 0.92209 0.92354 0.76633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.19 10.51 36.01 0.38 0.18 16 2 C 0.19 1.48 8.34 -12.95 -0.11 1.37 16 3 N -0.48 -4.65 11.29 -7.36 -0.08 -4.74 16 4 C -0.01 -0.11 6.62 -82.81 -0.55 -0.66 16 5 C 0.14 1.08 6.09 -4.98 -0.03 1.05 16 6 N -0.67 -5.28 5.74 -105.60 -0.61 -5.89 16 7 C 0.08 0.65 3.19 -65.44 -0.21 0.44 16 8 H 0.07 0.59 7.83 -51.93 -0.41 0.18 16 9 C 0.12 1.43 6.29 -2.40 -0.02 1.42 16 10 N -0.62 -8.73 3.32 -170.38 -0.57 -9.30 16 11 C 0.55 10.26 7.87 -10.98 -0.09 10.17 16 12 O -0.52 -11.62 16.12 5.56 0.09 -11.53 16 13 C -0.12 -2.35 5.35 36.01 0.19 -2.15 16 14 S -0.14 -3.67 18.55 -107.50 -1.99 -5.67 16 15 C -0.52 -15.12 10.04 30.94 0.31 -14.81 16 16 H 0.09 2.65 8.03 -52.48 -0.42 2.23 16 17 C 0.10 2.82 5.50 -17.43 -0.10 2.73 16 18 N -0.88 -26.65 13.97 55.49 0.78 -25.87 16 19 Si 0.86 21.93 27.74 -169.99 -4.71 17.22 16 20 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.24 -6.02 6.74 56.52 0.38 -5.64 16 22 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 23 C 0.11 1.12 6.06 -3.07 -0.02 1.10 16 24 C -0.11 -0.84 3.40 -88.79 -0.30 -1.14 16 25 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 26 C -0.14 -1.04 8.49 37.16 0.32 -0.72 16 27 C -0.05 -0.41 12.08 29.35 0.35 -0.06 16 28 O -0.20 -1.73 10.78 5.37 0.06 -1.68 16 29 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.10 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.05 0.41 8.09 -51.93 -0.42 -0.01 16 34 H 0.35 2.72 7.01 -39.29 -0.28 2.44 16 35 H 0.08 0.92 7.69 -51.93 -0.40 0.52 16 36 H 0.07 0.95 8.03 -51.93 -0.42 0.53 16 37 H 0.10 1.80 8.14 -51.92 -0.42 1.37 16 38 H 0.10 1.80 8.14 -51.92 -0.42 1.38 16 39 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.07 0.77 7.85 -51.93 -0.41 0.36 16 42 H 0.06 0.59 7.42 -51.93 -0.39 0.21 16 43 H 0.06 0.41 6.75 -51.93 -0.35 0.06 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.22 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 386.64 15.07 5.83 5.83 Total: -1.00 -35.90 386.64 -7.94 -43.85 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -6.87 Total: -1.14 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: 0.14 Total: -1.09 kcal Atomic # 7 Polarization: -45.31 SS G_CDS: -0.48 Total: -45.79 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: 0.15 Total: -13.20 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.71 Total: 17.22 kcal Atomic # 16 Polarization: -3.67 SS G_CDS: -1.99 Total: -5.67 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.90 -7.94 -43.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733840059.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.182 kcal (2) G-P(sol) polarization free energy of solvation -35.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds