Wall clock time and date at job start Tue Mar 31 2020 22:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30254 * 125.62075 * 2 1 4 4 C 1.34475 * 108.70308 * 179.97438 * 3 2 1 5 5 C 1.34325 * 107.67152 * 359.97438 * 4 3 2 6 6 C 1.50697 * 126.44914 * 180.02562 * 5 4 3 7 7 N 1.46901 * 109.46943 * 89.99914 * 6 5 4 8 8 C 1.46905 * 110.99870 * 180.02562 * 7 6 5 9 9 H 1.08997 * 110.63915 * 36.69131 * 8 7 6 10 10 C 1.55152 * 110.72015 * 273.54749 * 8 7 6 11 11 C 1.54913 * 101.58291 * 206.13288 * 10 8 7 12 12 N 1.47426 * 104.82786 * 37.01028 * 11 10 8 13 13 C 1.34779 * 125.64454 * 155.83548 * 12 11 10 14 14 O 1.21288 * 119.99711 * 180.02562 * 13 12 11 15 15 C 1.50693 * 120.00245 * 0.02562 * 13 12 11 16 16 S 1.81006 * 109.47220 * 180.02562 * 15 13 12 17 17 C 1.76196 * 100.00007 * 180.02562 * 16 15 13 18 18 H 1.07999 * 120.00316 * 359.97438 * 17 16 15 19 19 C 1.38801 * 120.00183 * 179.97438 * 17 16 15 20 20 N 1.31625 * 120.00205 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 119.99628 * 0.02562 * 19 17 16 22 22 H 1.48492 * 109.47210 * 89.99854 * 21 19 17 23 23 H 1.48496 * 109.46711 * 210.00066 * 21 19 17 24 24 H 1.48502 * 109.46882 * 329.99681 * 21 19 17 25 25 C 1.47017 * 108.70509 * 335.87142 * 12 11 10 26 26 H 1.09003 * 109.88509 * 241.64228 * 25 12 11 27 27 C 1.53002 * 109.88431 * 120.47798 * 25 12 11 28 28 O 1.33963 * 125.62172 * 180.28356 * 2 1 3 29 29 H 1.09005 * 109.46851 * 90.02680 * 1 2 3 30 30 H 1.08998 * 109.47220 * 210.02194 * 1 2 3 31 31 H 1.08996 * 109.47424 * 330.02840 * 1 2 3 32 32 H 1.08006 * 126.16658 * 179.97438 * 4 3 2 33 33 H 1.09004 * 109.46763 * 330.00355 * 6 5 4 34 34 H 1.08995 * 109.47483 * 210.00012 * 6 5 4 35 35 H 1.00901 * 111.00067 * 303.95401 * 7 6 5 36 36 H 1.09000 * 111.00563 * 324.20783 * 10 8 7 37 37 H 1.09000 * 111.00402 * 88.02232 * 10 8 7 38 38 H 1.08995 * 110.36747 * 155.84643 * 11 10 8 39 39 H 1.08993 * 110.36848 * 278.17394 * 11 10 8 40 40 H 1.08997 * 109.47200 * 300.00091 * 15 13 12 41 41 H 1.09003 * 109.47251 * 59.99835 * 15 13 12 42 42 H 0.97000 * 120.00027 * 179.97438 * 20 19 17 43 43 H 1.09003 * 109.46995 * 302.18787 * 27 25 12 44 44 H 1.08996 * 109.47046 * 62.19265 * 27 25 12 45 45 H 1.08999 * 109.47180 * 182.19454 * 27 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6675 0.0006 5 6 3.5698 -0.6756 0.0015 6 6 4.7937 -1.5549 0.0029 7 7 5.1904 -1.8396 1.3884 8 6 6.3834 -2.6960 1.4290 9 1 7.0691 -2.4380 0.6220 10 6 5.9866 -4.1940 1.3545 11 6 7.1826 -4.8687 2.0714 12 7 7.5415 -3.9417 3.1602 13 6 8.1823 -4.2766 4.2977 14 8 8.4266 -3.4275 5.1285 15 6 8.5951 -5.7060 4.5371 16 16 9.4266 -5.8335 6.1398 17 6 9.7902 -7.5574 6.1596 18 1 9.4990 -8.1803 5.3268 19 6 10.4509 -8.1149 7.2455 20 7 10.7221 -9.4029 7.2605 21 14 10.9540 -7.0376 8.6863 22 1 9.8571 -7.0050 9.6867 23 1 12.1803 -7.5918 9.3141 24 1 11.2246 -5.6597 8.2032 25 6 7.0839 -2.5918 2.8002 26 1 7.9373 -1.9174 2.7301 27 6 6.0970 -2.0793 3.8510 28 8 2.2872 -1.0889 -0.0054 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3634 0.8902 0.5134 32 1 4.4157 1.3162 0.0003 33 1 5.6084 -1.0444 -0.5107 34 1 4.5699 -2.4900 -0.5104 35 1 5.3410 -0.9856 1.9042 36 1 5.0553 -4.3787 1.8900 37 1 5.9122 -4.5275 0.3194 38 1 6.8849 -5.8349 2.4785 39 1 8.0194 -4.9876 1.3832 40 1 7.7117 -6.3445 4.5347 41 1 9.2759 -6.0247 3.7477 42 1 11.1841 -9.7924 8.0192 43 1 5.2569 -2.7697 3.9278 44 1 6.5984 -2.0083 4.8162 45 1 5.7324 -1.0949 3.5576 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734388974.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:37 Heat of formation + Delta-G solvation = 0.131480 kcal Electronic energy + Delta-G solvation = -26334.407369 eV Core-core repulsion = 22480.256156 eV Total energy + Delta-G solvation = -3854.151213 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.70466 -40.33466 -38.01339 -35.68312 -35.12647 -32.84863 -32.44375 -31.62550 -31.02162 -29.23364 -27.96228 -25.75113 -25.61816 -24.70148 -23.11073 -22.59937 -21.40943 -20.46125 -19.15073 -17.79698 -17.52333 -17.20138 -16.75376 -16.38090 -16.20634 -15.38844 -15.08842 -15.03396 -14.82809 -14.45114 -14.14063 -13.93429 -13.83390 -13.52867 -13.35752 -13.23963 -13.00663 -12.81758 -12.69153 -12.58366 -12.48081 -11.99071 -11.76850 -11.70482 -11.65636 -11.27177 -11.19703 -11.01046 -10.91934 -10.86457 -10.60869 -9.86006 -9.46952 -9.24491 -9.00770 -8.95956 -8.61517 -8.50188 -6.92473 -6.29342 -4.01111 0.99002 2.20280 2.27317 2.65406 2.93867 3.15578 3.33067 3.50234 3.56459 3.62457 3.73992 4.04766 4.27813 4.32870 4.38127 4.51990 4.57940 4.69492 4.72047 4.83960 4.88312 4.97223 5.00451 5.09442 5.09952 5.12026 5.17459 5.31378 5.35733 5.43066 5.44009 5.53402 5.60391 5.62904 5.75775 5.88919 5.91157 5.98401 6.00934 6.25753 6.40851 6.46858 6.75879 7.33055 7.56947 7.93657 8.41052 8.43707 9.16856 10.79831 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.030299 B = 0.001876 C = 0.001854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.905737 B =14922.184409 C =15100.075499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.191 3.809 3 N -0.486 5.486 4 C -0.035 4.035 5 C -0.039 4.039 6 C 0.142 3.858 7 N -0.673 5.673 8 C 0.077 3.923 9 H 0.065 0.935 10 C -0.121 4.121 11 C 0.098 3.902 12 N -0.619 5.619 13 C 0.549 3.451 14 O -0.515 6.515 15 C -0.118 4.118 16 S -0.142 6.142 17 C -0.521 4.521 18 H 0.088 0.912 19 C 0.096 3.904 20 N -0.880 5.880 21 Si 0.856 3.144 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C 0.139 3.861 26 H 0.073 0.927 27 C -0.155 4.155 28 O -0.192 6.192 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.101 0.899 32 H 0.182 0.818 33 H 0.069 0.931 34 H 0.094 0.906 35 H 0.350 0.650 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.070 0.930 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.271 0.729 43 H 0.064 0.936 44 H 0.072 0.928 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.201 17.296 -20.047 31.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.016 4.016 3 N -0.216 5.216 4 C -0.174 4.174 5 C -0.093 4.093 6 C 0.013 3.987 7 N -0.308 5.308 8 C -0.033 4.033 9 H 0.083 0.917 10 C -0.160 4.160 11 C -0.025 4.025 12 N -0.356 5.356 13 C 0.338 3.662 14 O -0.390 6.390 15 C -0.268 4.268 16 S 0.084 5.916 17 C -0.669 4.669 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.517 5.517 21 Si 0.681 3.319 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.159 1.159 25 C 0.035 3.965 26 H 0.091 0.909 27 C -0.213 4.213 28 O -0.079 6.079 29 H 0.111 0.889 30 H 0.108 0.892 31 H 0.120 0.880 32 H 0.199 0.801 33 H 0.087 0.913 34 H 0.113 0.887 35 H 0.173 0.827 36 H 0.107 0.893 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.088 0.912 40 H 0.114 0.886 41 H 0.114 0.886 42 H 0.081 0.919 43 H 0.083 0.917 44 H 0.091 0.909 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.394 18.417 -18.565 31.407 hybrid contribution 1.030 -0.889 -0.631 1.500 sum -16.364 17.528 -19.196 30.716 Atomic orbital electron populations 1.20277 0.81284 1.05307 1.04687 1.26343 0.96554 0.78680 1.00045 1.70456 1.02037 1.30364 1.18761 1.23097 0.95272 0.92937 1.06108 1.23200 0.83760 0.94854 1.07478 1.20298 0.88987 0.98128 0.91296 1.60706 1.36010 1.22331 1.11802 1.22583 0.90003 0.94294 0.96422 0.91688 1.22858 0.98839 0.93158 1.01107 1.22341 0.96868 0.94199 0.89122 1.48465 1.59237 1.08809 1.19134 1.19966 0.76304 0.90520 0.79458 1.90692 1.53815 1.51203 1.43251 1.23258 1.04294 0.94814 1.04443 1.84785 1.73816 1.13724 1.19225 1.22307 1.44284 0.90795 1.09486 0.89394 1.24707 0.94048 0.94734 0.97787 1.69935 1.39656 1.10664 1.31400 0.86736 0.79169 0.82867 0.83097 1.19198 1.19937 1.15934 1.21467 0.96480 0.85218 0.93343 0.90858 1.22012 0.99111 1.00556 0.99648 1.84410 1.16527 1.37594 1.69351 0.88924 0.89183 0.88049 0.80106 0.91326 0.88748 0.82734 0.89325 0.90126 0.89898 0.91192 0.88595 0.88580 0.91943 0.91720 0.90889 0.92198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.24 10.51 36.00 0.38 0.14 16 2 C 0.19 1.64 8.34 -12.95 -0.11 1.53 16 3 N -0.49 -4.92 11.29 -11.10 -0.13 -5.05 16 4 C -0.03 -0.29 11.80 -17.77 -0.21 -0.50 16 5 C -0.04 -0.32 6.90 -35.69 -0.25 -0.56 16 6 C 0.14 0.84 6.09 -4.98 -0.03 0.81 16 7 N -0.67 -4.79 5.58 -106.06 -0.59 -5.38 16 8 C 0.08 0.58 3.11 -65.88 -0.21 0.38 16 9 H 0.07 0.41 7.89 -51.93 -0.41 0.00 16 10 C -0.12 -0.93 6.71 -24.58 -0.16 -1.10 16 11 C 0.10 0.97 6.69 -2.53 -0.02 0.95 16 12 N -0.62 -8.29 3.08 -163.02 -0.50 -8.80 16 13 C 0.55 9.96 7.65 -10.99 -0.08 9.88 16 14 O -0.52 -11.12 14.77 5.55 0.08 -11.04 16 15 C -0.12 -2.30 5.16 36.00 0.19 -2.12 16 16 S -0.14 -3.61 18.55 -107.50 -1.99 -5.60 16 17 C -0.52 -15.01 10.04 30.94 0.31 -14.70 16 18 H 0.09 2.64 8.03 -52.49 -0.42 2.21 16 19 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 20 N -0.88 -26.51 13.97 55.49 0.78 -25.74 16 21 Si 0.86 21.82 27.74 -169.99 -4.72 17.10 16 22 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 24 H -0.24 -5.99 6.74 56.52 0.38 -5.61 16 25 C 0.14 1.53 3.41 -66.95 -0.23 1.30 16 26 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 27 C -0.16 -1.80 8.40 37.16 0.31 -1.49 16 28 O -0.19 -1.82 10.78 5.36 0.06 -1.76 16 29 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.18 1.06 8.06 -52.48 -0.42 0.64 16 33 H 0.07 0.28 8.08 -51.93 -0.42 -0.14 16 34 H 0.09 0.53 8.13 -51.93 -0.42 0.11 16 35 H 0.35 2.44 6.43 -39.29 -0.25 2.19 16 36 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.08 0.83 7.47 -51.93 -0.39 0.44 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.10 1.77 7.85 -51.92 -0.41 1.36 16 41 H 0.10 1.76 8.14 -51.92 -0.42 1.34 16 42 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.07 1.08 6.76 -51.93 -0.35 0.73 16 45 H 0.06 0.55 6.23 -51.93 -0.32 0.23 16 LS Contribution 383.56 15.07 5.78 5.78 Total: -1.00 -35.99 383.56 -8.22 -44.21 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -6.78 Total: -0.94 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: -0.20 Total: -2.79 kcal Atomic # 7 Polarization: -44.52 SS G_CDS: -0.44 Total: -44.96 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: 0.14 Total: -12.80 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.72 Total: 17.10 kcal Atomic # 16 Polarization: -3.61 SS G_CDS: -1.99 Total: -5.60 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.99 -8.22 -44.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734388974.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.340 kcal (2) G-P(sol) polarization free energy of solvation -35.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds