Wall clock time and date at job start Tue Mar 31 2020 22:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30254 * 125.62075 * 2 1 4 4 C 1.34475 * 108.70308 * 179.97438 * 3 2 1 5 5 C 1.34325 * 107.67152 * 359.97438 * 4 3 2 6 6 C 1.50697 * 126.44914 * 180.02562 * 5 4 3 7 7 N 1.46901 * 109.46943 * 89.99914 * 6 5 4 8 8 C 1.46905 * 110.99870 * 180.02562 * 7 6 5 9 9 H 1.08997 * 110.63915 * 36.69131 * 8 7 6 10 10 C 1.55152 * 110.72015 * 273.54749 * 8 7 6 11 11 C 1.54913 * 101.58291 * 206.13288 * 10 8 7 12 12 N 1.47426 * 104.82786 * 37.01028 * 11 10 8 13 13 C 1.34779 * 125.64454 * 155.83548 * 12 11 10 14 14 O 1.21288 * 119.99711 * 180.02562 * 13 12 11 15 15 C 1.50693 * 120.00245 * 0.02562 * 13 12 11 16 16 S 1.81006 * 109.47220 * 180.02562 * 15 13 12 17 17 C 1.76196 * 100.00007 * 180.02562 * 16 15 13 18 18 H 1.07999 * 120.00316 * 359.97438 * 17 16 15 19 19 C 1.38801 * 120.00183 * 179.97438 * 17 16 15 20 20 N 1.31625 * 120.00205 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 119.99628 * 0.02562 * 19 17 16 22 22 H 1.48492 * 109.47210 * 89.99854 * 21 19 17 23 23 H 1.48496 * 109.46711 * 210.00066 * 21 19 17 24 24 H 1.48502 * 109.46882 * 329.99681 * 21 19 17 25 25 C 1.47017 * 108.70509 * 335.87142 * 12 11 10 26 26 H 1.09003 * 109.88509 * 241.64228 * 25 12 11 27 27 C 1.53002 * 109.88431 * 120.47798 * 25 12 11 28 28 O 1.33963 * 125.62172 * 180.28356 * 2 1 3 29 29 H 1.09005 * 109.46851 * 90.02680 * 1 2 3 30 30 H 1.08998 * 109.47220 * 210.02194 * 1 2 3 31 31 H 1.08996 * 109.47424 * 330.02840 * 1 2 3 32 32 H 1.08006 * 126.16658 * 179.97438 * 4 3 2 33 33 H 1.09004 * 109.46763 * 330.00355 * 6 5 4 34 34 H 1.08995 * 109.47483 * 210.00012 * 6 5 4 35 35 H 1.00901 * 111.00067 * 303.95401 * 7 6 5 36 36 H 1.09000 * 111.00563 * 324.20783 * 10 8 7 37 37 H 1.09000 * 111.00402 * 88.02232 * 10 8 7 38 38 H 1.08995 * 110.36747 * 155.84643 * 11 10 8 39 39 H 1.08993 * 110.36848 * 278.17394 * 11 10 8 40 40 H 1.08997 * 109.47200 * 300.00091 * 15 13 12 41 41 H 1.09003 * 109.47251 * 59.99835 * 15 13 12 42 42 H 0.97000 * 120.00027 * 179.97438 * 20 19 17 43 43 H 1.09003 * 109.46995 * 302.18787 * 27 25 12 44 44 H 1.08996 * 109.47046 * 62.19265 * 27 25 12 45 45 H 1.08999 * 109.47180 * 182.19454 * 27 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6675 0.0006 5 6 3.5698 -0.6756 0.0015 6 6 4.7937 -1.5549 0.0029 7 7 5.1904 -1.8396 1.3884 8 6 6.3834 -2.6960 1.4290 9 1 7.0691 -2.4380 0.6220 10 6 5.9866 -4.1940 1.3545 11 6 7.1826 -4.8687 2.0714 12 7 7.5415 -3.9417 3.1602 13 6 8.1823 -4.2766 4.2977 14 8 8.4266 -3.4275 5.1285 15 6 8.5951 -5.7060 4.5371 16 16 9.4266 -5.8335 6.1398 17 6 9.7902 -7.5574 6.1596 18 1 9.4990 -8.1803 5.3268 19 6 10.4509 -8.1149 7.2455 20 7 10.7221 -9.4029 7.2605 21 14 10.9540 -7.0376 8.6863 22 1 9.8571 -7.0050 9.6867 23 1 12.1803 -7.5918 9.3141 24 1 11.2246 -5.6597 8.2032 25 6 7.0839 -2.5918 2.8002 26 1 7.9373 -1.9174 2.7301 27 6 6.0970 -2.0793 3.8510 28 8 2.2872 -1.0889 -0.0054 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3634 0.8902 0.5134 32 1 4.4157 1.3162 0.0003 33 1 5.6084 -1.0444 -0.5107 34 1 4.5699 -2.4900 -0.5104 35 1 5.3410 -0.9856 1.9042 36 1 5.0553 -4.3787 1.8900 37 1 5.9122 -4.5275 0.3194 38 1 6.8849 -5.8349 2.4785 39 1 8.0194 -4.9876 1.3832 40 1 7.7117 -6.3445 4.5347 41 1 9.2759 -6.0247 3.7477 42 1 11.1841 -9.7924 8.0192 43 1 5.2569 -2.7697 3.9278 44 1 6.5984 -2.0083 4.8162 45 1 5.7324 -1.0949 3.5576 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734388974.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:36 Heat of formation + Delta-G solvation = -27.240200 kcal Electronic energy + Delta-G solvation = -26335.594295 eV Core-core repulsion = 22480.256156 eV Total energy + Delta-G solvation = -3855.338138 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.29437 -41.37983 -39.12613 -36.47094 -35.75017 -34.68373 -33.56778 -32.43556 -31.90185 -30.33393 -28.78573 -27.85110 -26.49315 -25.28987 -24.08865 -23.17883 -21.99630 -21.32125 -20.35752 -19.59299 -18.26230 -18.00734 -17.80935 -17.28357 -17.12754 -16.91423 -16.46317 -16.09381 -15.83284 -15.52211 -15.02209 -14.92127 -14.76530 -14.59984 -14.52405 -13.92870 -13.83478 -13.77174 -13.49350 -13.44469 -13.32531 -13.16953 -13.16018 -13.01869 -12.76643 -12.58495 -12.42479 -12.29311 -11.91287 -11.87104 -11.66998 -11.51709 -11.18191 -10.91867 -10.55047 -9.80854 -9.72988 -9.46092 -9.01695 -8.52483 -6.23651 0.41525 0.95076 1.30484 1.44008 1.51650 1.52658 1.65469 1.72924 2.03434 2.24099 2.67045 2.85683 3.08723 3.21556 3.29028 3.61495 3.74178 3.83853 4.02022 4.05680 4.14236 4.16009 4.29390 4.30868 4.38331 4.41716 4.49483 4.58784 4.63890 4.65719 4.67059 4.72688 4.76457 4.99543 5.02149 5.05395 5.08990 5.23243 5.29127 5.39035 5.45681 5.69827 5.88881 6.10230 6.21271 6.37356 6.74457 6.92607 7.07691 8.59816 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.030299 B = 0.001876 C = 0.001854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.905737 B =14922.184409 C =15100.075499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.183 3.817 3 N -0.521 5.521 4 C -0.048 4.048 5 C -0.045 4.045 6 C 0.147 3.853 7 N -0.682 5.682 8 C 0.093 3.907 9 H 0.092 0.908 10 C -0.112 4.112 11 C 0.088 3.912 12 N -0.611 5.611 13 C 0.548 3.452 14 O -0.559 6.559 15 C -0.102 4.102 16 S -0.175 6.175 17 C -0.529 4.529 18 H 0.063 0.937 19 C 0.047 3.953 20 N -0.915 5.915 21 Si 0.913 3.087 22 H -0.263 1.263 23 H -0.258 1.258 24 H -0.238 1.238 25 C 0.132 3.868 26 H 0.072 0.928 27 C -0.146 4.146 28 O -0.208 6.208 29 H 0.110 0.890 30 H 0.102 0.898 31 H 0.107 0.893 32 H 0.200 0.800 33 H 0.094 0.906 34 H 0.101 0.899 35 H 0.351 0.649 36 H 0.075 0.925 37 H 0.112 0.888 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.107 0.893 41 H 0.111 0.889 42 H 0.277 0.723 43 H 0.054 0.946 44 H 0.035 0.965 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.934 18.352 -22.040 33.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.024 4.024 3 N -0.251 5.251 4 C -0.186 4.186 5 C -0.098 4.098 6 C 0.018 3.982 7 N -0.318 5.318 8 C -0.017 4.017 9 H 0.109 0.891 10 C -0.150 4.150 11 C -0.035 4.035 12 N -0.346 5.346 13 C 0.336 3.664 14 O -0.437 6.437 15 C -0.253 4.253 16 S 0.052 5.948 17 C -0.677 4.677 18 H 0.081 0.919 19 C -0.159 4.159 20 N -0.553 5.553 21 Si 0.735 3.265 22 H -0.188 1.188 23 H -0.182 1.182 24 H -0.162 1.162 25 C 0.029 3.971 26 H 0.090 0.910 27 C -0.204 4.204 28 O -0.095 6.095 29 H 0.128 0.872 30 H 0.121 0.879 31 H 0.126 0.874 32 H 0.217 0.783 33 H 0.112 0.888 34 H 0.120 0.880 35 H 0.173 0.827 36 H 0.094 0.906 37 H 0.130 0.870 38 H 0.099 0.901 39 H 0.109 0.891 40 H 0.125 0.875 41 H 0.129 0.871 42 H 0.087 0.913 43 H 0.074 0.926 44 H 0.055 0.945 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -18.150 19.466 -20.614 33.664 hybrid contribution 1.132 -1.192 -0.175 1.653 sum -17.018 18.274 -20.788 32.491 Atomic orbital electron populations 1.20504 0.78785 1.06215 1.06056 1.27177 0.97947 0.78253 0.98974 1.70460 1.03097 1.31386 1.20179 1.23485 0.95416 0.93629 1.06101 1.23606 0.83939 0.95132 1.07162 1.20405 0.88673 0.98464 0.90617 1.60647 1.35775 1.22486 1.12889 1.22478 0.90280 0.94375 0.94550 0.89069 1.22841 0.96972 0.92890 1.02315 1.22696 0.98715 0.93649 0.88403 1.48423 1.57047 1.10892 1.18194 1.19611 0.76978 0.89249 0.80569 1.90676 1.56076 1.51840 1.45152 1.23208 1.04350 0.96777 1.00973 1.84709 1.75025 1.11044 1.24060 1.22440 1.44007 0.92434 1.08771 0.91926 1.25541 0.94109 0.95933 1.00279 1.70009 1.40590 1.12114 1.32589 0.85881 0.79469 0.81072 0.80034 1.18761 1.18190 1.16165 1.21695 0.96594 0.83644 0.95181 0.91006 1.21900 0.98498 1.01842 0.98208 1.84416 1.17286 1.38172 1.69659 0.87215 0.87924 0.87413 0.78291 0.88790 0.88041 0.82664 0.90617 0.87017 0.90137 0.89092 0.87452 0.87113 0.91339 0.92649 0.94543 0.89747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.40 10.51 71.24 0.75 0.35 16 2 C 0.18 2.96 8.34 88.34 0.74 3.69 16 3 N -0.52 -10.11 11.29 -303.84 -3.43 -13.55 16 4 C -0.05 -0.73 11.80 83.39 0.98 0.25 16 5 C -0.05 -0.64 6.90 24.79 0.17 -0.47 16 6 C 0.15 1.23 6.09 85.56 0.52 1.76 16 7 N -0.68 -7.63 5.58 -489.45 -2.73 -10.36 16 8 C 0.09 1.08 3.11 46.10 0.14 1.22 16 9 H 0.09 0.67 7.89 -2.39 -0.02 0.65 16 10 C -0.11 -1.32 6.71 31.99 0.21 -1.11 16 11 C 0.09 1.48 6.69 86.86 0.58 2.06 16 12 N -0.61 -15.43 3.08 -788.06 -2.43 -17.86 16 13 C 0.55 19.68 7.65 87.65 0.67 20.35 16 14 O -0.56 -24.46 14.77 -3.06 -0.05 -24.51 16 15 C -0.10 -3.97 5.16 71.23 0.37 -3.61 16 16 S -0.17 -8.97 18.55 -56.49 -1.05 -10.02 16 17 C -0.53 -30.98 10.04 67.95 0.68 -30.30 16 18 H 0.06 3.86 8.03 -2.91 -0.02 3.83 16 19 C 0.05 2.77 5.50 84.86 0.47 3.23 16 20 N -0.92 -55.73 13.97 21.65 0.30 -55.43 16 21 Si 0.91 45.27 27.74 68.60 1.90 47.17 16 22 H -0.26 -12.74 7.11 99.48 0.71 -12.04 16 23 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 24 H -0.24 -11.79 6.74 99.48 0.67 -11.12 16 25 C 0.13 2.65 3.41 45.34 0.15 2.81 16 26 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 27 C -0.15 -3.31 8.40 71.98 0.60 -2.70 16 28 O -0.21 -3.65 10.78 -3.74 -0.04 -3.69 16 29 H 0.11 0.37 8.14 -2.38 -0.02 0.35 16 30 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.20 1.99 8.06 -2.91 -0.02 1.97 16 33 H 0.09 0.35 8.08 -2.39 -0.02 0.33 16 34 H 0.10 0.75 8.13 -2.39 -0.02 0.73 16 35 H 0.35 3.95 6.43 -89.69 -0.58 3.37 16 36 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.08 1.43 7.47 -2.39 -0.02 1.41 16 39 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.11 3.91 7.85 -2.40 -0.02 3.89 16 41 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16 42 H 0.28 15.60 8.31 -92.71 -0.77 14.83 16 43 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.04 1.10 6.76 -2.39 -0.02 1.08 16 45 H 0.08 1.44 6.23 -2.39 -0.01 1.43 16 Total: -1.00 -80.37 383.56 -0.08 -80.45 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: 0.39 Total: 10.26 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: 7.05 Total: -2.46 kcal Atomic # 7 Polarization: -88.91 SS G_CDS: -8.29 Total: -97.20 kcal Atomic # 8 Polarization: -28.12 SS G_CDS: -0.09 Total: -28.20 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 1.90 Total: 47.17 kcal Atomic # 16 Polarization: -8.97 SS G_CDS: -1.05 Total: -10.02 kcal Total: -80.37 -0.08 -80.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734388974.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.209 kcal (2) G-P(sol) polarization free energy of solvation -80.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds