Wall clock time and date at job start Tue Mar 31 2020 23:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50693 * 109.47518 * 2 1 4 4 N 1.34662 * 125.80302 * 264.97629 * 3 2 1 5 5 H 0.97003 * 124.84775 * 0.02562 * 4 3 2 6 6 C 1.36446 * 110.30060 * 180.02562 * 4 3 2 7 7 C 1.34490 * 108.85245 * 0.02562 * 6 4 3 8 8 C 1.36767 * 125.80093 * 84.99840 * 3 2 1 9 9 C 1.47269 * 126.94379 * 359.94959 * 8 3 2 10 10 O 1.21626 * 119.99661 * 0.02562 * 9 8 3 11 11 N 1.34772 * 119.99714 * 180.02562 * 9 8 3 12 12 C 1.46499 * 119.99656 * 179.97438 * 11 9 8 13 13 C 1.53000 * 109.47406 * 179.97438 * 12 11 9 14 14 H 1.08995 * 109.47473 * 295.00557 * 13 12 11 15 15 C 1.52998 * 109.47499 * 174.99866 * 13 12 11 16 16 N 1.46506 * 109.46902 * 55.00444 * 13 12 11 17 17 C 1.34777 * 119.99783 * 205.00332 * 16 13 12 18 18 O 1.21283 * 119.99811 * 359.97438 * 17 16 13 19 19 C 1.50702 * 119.99906 * 179.97438 * 17 16 13 20 20 S 1.81003 * 109.47208 * 179.97438 * 19 17 16 21 21 C 1.76193 * 99.99975 * 180.02562 * 20 19 17 22 22 H 1.08000 * 119.99995 * 0.02562 * 21 20 19 23 23 C 1.38800 * 119.99949 * 179.97438 * 21 20 19 24 24 N 1.31631 * 119.99964 * 179.97438 * 23 21 20 25 25 Si 1.86794 * 120.00000 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.47566 * 89.99601 * 25 23 21 27 27 H 1.48500 * 109.47067 * 209.99632 * 25 23 21 28 28 H 1.48506 * 109.47133 * 329.99747 * 25 23 21 29 29 H 1.09004 * 109.47029 * 299.99925 * 1 2 3 30 30 H 1.08997 * 109.47083 * 59.99592 * 1 2 3 31 31 H 1.08999 * 109.47414 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46839 * 239.99555 * 2 1 3 33 33 H 1.08997 * 109.47083 * 120.00408 * 2 1 3 34 34 H 1.07998 * 125.57228 * 179.97438 * 6 4 3 35 35 H 1.08004 * 126.82750 * 180.25911 * 7 6 4 36 36 H 0.97001 * 120.00515 * 359.97438 * 11 9 8 37 37 H 1.09006 * 109.47607 * 300.00140 * 12 11 9 38 38 H 1.09006 * 109.47326 * 59.99929 * 12 11 9 39 39 H 1.08999 * 109.47618 * 180.02562 * 15 13 12 40 40 H 1.09004 * 109.47206 * 300.00525 * 15 13 12 41 41 H 1.08998 * 109.47020 * 60.00164 * 15 13 12 42 42 H 0.96994 * 120.00169 * 24.99302 * 16 13 12 43 43 H 1.08995 * 109.47220 * 300.00074 * 19 17 16 44 44 H 1.09004 * 109.46725 * 60.00000 * 19 17 16 45 45 H 0.96995 * 119.99858 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.3852 2.1315 -1.0880 5 1 2.3533 1.8019 -1.9997 6 6 2.7940 3.3816 -0.7246 7 6 2.7102 3.4946 0.6129 8 6 2.2080 2.2072 1.1050 9 6 1.9457 1.8366 2.5060 10 8 1.5277 0.7261 2.7732 11 7 2.1690 2.7280 3.4919 12 6 1.9076 2.3594 4.8855 13 6 2.2418 3.5419 5.7970 14 1 3.3111 3.7472 5.7487 15 6 1.8522 3.2020 7.2370 16 7 1.4972 4.7241 5.3560 17 6 1.9631 5.9573 5.6365 18 8 2.9985 6.0883 6.2543 19 6 1.1976 7.1733 5.1823 20 16 2.0724 8.6682 5.7081 21 6 0.9884 9.8992 5.0648 22 1 0.0955 9.6074 4.5318 23 6 1.2815 11.2441 5.2438 24 7 0.4719 12.1638 4.7627 25 14 2.8254 11.7488 6.1661 26 1 3.9518 11.8863 5.2081 27 1 2.5931 13.0481 6.8466 28 1 3.1590 10.7132 7.1769 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.1306 4.1537 -1.4005 35 1 2.9583 4.3623 1.2061 36 1 2.5028 3.6135 3.2788 37 1 0.8560 2.0971 5.0009 38 1 2.5272 1.5049 5.1577 39 1 2.0898 4.0445 7.8864 40 1 0.7827 2.9967 7.2853 41 1 2.4061 2.3224 7.5652 42 1 0.6691 4.6193 4.8620 43 1 1.1131 7.1646 4.0957 44 1 0.2013 7.1614 5.6243 45 1 0.6769 13.1036 4.8875 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001744650983.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:23 Heat of formation + Delta-G solvation = -46.200063 kcal Electronic energy + Delta-G solvation = -26398.582253 eV Core-core repulsion = 22542.421954 eV Total energy + Delta-G solvation = -3856.160300 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.55035 -39.81344 -38.93657 -36.32732 -34.12684 -33.51048 -32.44958 -31.76215 -31.04099 -28.74544 -28.57465 -26.62828 -25.62334 -23.83990 -22.45504 -21.77857 -20.87336 -20.43179 -19.63211 -17.97185 -17.87006 -16.67843 -16.66770 -16.07412 -15.67433 -15.30261 -15.04233 -14.95182 -14.64452 -14.54372 -14.16708 -13.95393 -13.83580 -13.44150 -13.35474 -13.05009 -12.91911 -12.80353 -12.68200 -12.65071 -12.36044 -12.12720 -11.93443 -11.68740 -11.27793 -11.22545 -11.15765 -11.01827 -10.60940 -9.97489 -9.86945 -9.55769 -9.28041 -9.08667 -9.03465 -9.00221 -8.51349 -8.45256 -6.92952 -6.29907 -4.01668 1.52896 2.18653 2.71952 2.78979 2.93150 3.21008 3.31370 3.34771 3.43187 3.49457 3.64912 4.31986 4.41069 4.44399 4.66719 4.72999 4.76930 4.92841 4.97254 5.05506 5.09122 5.11978 5.18465 5.26880 5.27479 5.38519 5.48906 5.57088 5.59031 5.60307 5.72295 5.74871 5.89943 5.95671 5.97332 6.00548 6.09360 6.32090 6.49218 6.52543 6.65807 7.13036 7.46449 7.57167 7.93199 8.21604 8.40921 8.45558 9.16264 10.79362 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012921 B = 0.002506 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.518580 B =11169.676074 C =12652.591432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.062 4.062 3 C 0.109 3.891 4 N -0.552 5.552 5 H 0.415 0.585 6 C -0.015 4.015 7 C -0.166 4.166 8 C -0.237 4.237 9 C 0.593 3.407 10 O -0.552 6.552 11 N -0.726 5.726 12 C 0.116 3.884 13 C 0.132 3.868 14 H 0.095 0.905 15 C -0.161 4.161 16 N -0.734 5.734 17 C 0.532 3.468 18 O -0.517 6.517 19 C -0.125 4.125 20 S -0.141 6.141 21 C -0.521 4.521 22 H 0.088 0.912 23 C 0.095 3.905 24 N -0.880 5.880 25 Si 0.857 3.143 26 H -0.267 1.267 27 H -0.274 1.274 28 H -0.235 1.235 29 H 0.065 0.935 30 H 0.047 0.953 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.103 0.897 34 H 0.171 0.829 35 H 0.147 0.853 36 H 0.404 0.596 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.059 0.941 41 H 0.066 0.934 42 H 0.400 0.600 43 H 0.097 0.903 44 H 0.097 0.903 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.063 -24.909 -10.345 27.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.100 4.100 3 C -0.009 4.009 4 N -0.147 5.147 5 H 0.252 0.748 6 C -0.142 4.142 7 C -0.190 4.190 8 C -0.247 4.247 9 C 0.382 3.618 10 O -0.432 6.432 11 N -0.378 5.378 12 C -0.009 4.009 13 C 0.027 3.973 14 H 0.113 0.887 15 C -0.220 4.220 16 N -0.389 5.389 17 C 0.318 3.682 18 O -0.391 6.391 19 C -0.276 4.276 20 S 0.085 5.915 21 C -0.669 4.669 22 H 0.106 0.894 23 C -0.114 4.114 24 N -0.517 5.517 25 Si 0.682 3.318 26 H -0.192 1.192 27 H -0.200 1.200 28 H -0.159 1.159 29 H 0.084 0.916 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.121 0.879 34 H 0.188 0.812 35 H 0.164 0.836 36 H 0.239 0.761 37 H 0.092 0.908 38 H 0.099 0.901 39 H 0.088 0.912 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.235 0.765 43 H 0.115 0.885 44 H 0.115 0.885 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.469 -25.286 -9.250 27.147 hybrid contribution -0.903 0.853 -1.243 1.757 sum 2.566 -24.433 -10.493 26.715 Atomic orbital electron populations 1.21652 0.93943 1.02027 1.02184 1.20287 0.96771 0.89092 1.03840 1.20336 1.00071 0.94745 0.85787 1.41616 1.52181 1.12171 1.08762 0.74835 1.21776 1.07852 0.87933 0.96677 1.22110 1.05673 0.97287 0.93937 1.20078 1.16283 0.96170 0.92134 1.17331 0.76555 0.83879 0.84023 1.90733 1.46892 1.21272 1.84294 1.45761 1.68449 1.17480 1.06139 1.21653 1.02154 0.96875 0.80169 1.21161 0.98279 0.84120 0.93779 0.88725 1.22112 1.01879 1.02504 0.95491 1.46109 1.27851 1.05092 1.59885 1.20296 0.85366 0.83781 0.78741 1.90706 1.23522 1.86022 1.38885 1.23289 1.03137 0.96293 1.04834 1.84783 1.35297 0.96309 1.75083 1.22316 1.11036 0.91887 1.41625 0.89398 1.24718 0.96791 0.95356 0.94487 1.69940 1.36776 1.00941 1.44050 0.86734 0.83309 0.79939 0.81846 1.19230 1.19974 1.15916 0.91616 0.93365 0.92047 0.91615 0.87883 0.81196 0.83575 0.76065 0.90847 0.90087 0.91163 0.92144 0.91481 0.76525 0.88498 0.88479 0.91946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 9.89 37.16 0.37 -0.73 16 2 C -0.06 -0.49 5.79 -27.89 -0.16 -0.65 16 3 C 0.11 1.00 6.43 -81.89 -0.53 0.47 16 4 N -0.55 -3.77 5.90 -9.11 -0.05 -3.82 16 5 H 0.42 1.50 8.96 -40.82 -0.37 1.14 16 6 C -0.02 -0.12 11.89 -16.82 -0.20 -0.32 16 7 C -0.17 -1.59 10.56 -37.50 -0.40 -1.98 16 8 C -0.24 -2.57 6.29 -103.35 -0.65 -3.22 16 9 C 0.59 7.09 7.81 -12.59 -0.10 6.99 16 10 O -0.55 -7.74 14.76 5.25 0.08 -7.66 16 11 N -0.73 -7.38 5.38 -61.43 -0.33 -7.71 16 12 C 0.12 1.08 5.23 -4.04 -0.02 1.06 16 13 C 0.13 1.36 2.73 -67.93 -0.19 1.17 16 14 H 0.09 1.12 7.58 -51.93 -0.39 0.73 16 15 C -0.16 -1.56 9.48 37.16 0.35 -1.21 16 16 N -0.73 -8.51 4.52 -53.80 -0.24 -8.76 16 17 C 0.53 8.75 7.81 -10.98 -0.09 8.67 16 18 O -0.52 -10.43 15.53 5.56 0.09 -10.34 16 19 C -0.12 -2.31 6.16 36.01 0.22 -2.08 16 20 S -0.14 -3.48 18.55 -107.50 -1.99 -5.47 16 21 C -0.52 -14.78 10.04 30.94 0.31 -14.47 16 22 H 0.09 2.60 8.03 -52.49 -0.42 2.18 16 23 C 0.10 2.75 5.50 -17.43 -0.10 2.66 16 24 N -0.88 -26.36 13.97 55.49 0.78 -25.59 16 25 Si 0.86 21.55 27.74 -169.99 -4.71 16.84 16 26 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 27 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 28 H -0.24 -5.90 6.74 56.52 0.38 -5.52 16 29 H 0.06 0.66 7.96 -51.93 -0.41 0.24 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.10 1.00 6.75 -51.93 -0.35 0.65 16 34 H 0.17 0.84 8.06 -52.49 -0.42 0.42 16 35 H 0.15 1.28 7.70 -52.48 -0.40 0.88 16 36 H 0.40 3.93 7.26 -40.82 -0.30 3.64 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.40 3.85 8.60 -40.82 -0.35 3.50 16 43 H 0.10 1.65 8.14 -51.92 -0.42 1.23 16 44 H 0.10 1.69 8.14 -51.91 -0.42 1.27 16 45 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 393.53 15.07 5.93 5.93 Total: -1.00 -35.68 393.53 -8.44 -44.12 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -6.80 Total: 6.11 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: -1.17 Total: -3.65 kcal Atomic # 7 Polarization: -46.02 SS G_CDS: 0.15 Total: -45.87 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: 0.16 Total: -18.00 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.71 Total: 16.84 kcal Atomic # 16 Polarization: -3.48 SS G_CDS: -1.99 Total: -5.47 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.68 -8.44 -44.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001744650983.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.083 kcal (2) G-P(sol) polarization free energy of solvation -35.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds