Wall clock time and date at job start Tue Mar 31 2020 23:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50693 * 109.47518 * 2 1 4 4 N 1.34662 * 125.80302 * 264.97629 * 3 2 1 5 5 H 0.97003 * 124.84775 * 0.02562 * 4 3 2 6 6 C 1.36446 * 110.30060 * 180.02562 * 4 3 2 7 7 C 1.34490 * 108.85245 * 0.02562 * 6 4 3 8 8 C 1.36767 * 125.80093 * 84.99840 * 3 2 1 9 9 C 1.47269 * 126.94379 * 359.94959 * 8 3 2 10 10 O 1.21626 * 119.99661 * 0.02562 * 9 8 3 11 11 N 1.34772 * 119.99714 * 180.02562 * 9 8 3 12 12 C 1.46499 * 119.99656 * 179.97438 * 11 9 8 13 13 C 1.53000 * 109.47406 * 179.97438 * 12 11 9 14 14 H 1.08995 * 109.47473 * 295.00557 * 13 12 11 15 15 C 1.52998 * 109.47499 * 174.99866 * 13 12 11 16 16 N 1.46506 * 109.46902 * 55.00444 * 13 12 11 17 17 C 1.34777 * 119.99783 * 205.00332 * 16 13 12 18 18 O 1.21283 * 119.99811 * 359.97438 * 17 16 13 19 19 C 1.50702 * 119.99906 * 179.97438 * 17 16 13 20 20 S 1.81003 * 109.47208 * 179.97438 * 19 17 16 21 21 C 1.76193 * 99.99975 * 180.02562 * 20 19 17 22 22 H 1.08000 * 119.99995 * 0.02562 * 21 20 19 23 23 C 1.38800 * 119.99949 * 179.97438 * 21 20 19 24 24 N 1.31631 * 119.99964 * 179.97438 * 23 21 20 25 25 Si 1.86794 * 120.00000 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.47566 * 89.99601 * 25 23 21 27 27 H 1.48500 * 109.47067 * 209.99632 * 25 23 21 28 28 H 1.48506 * 109.47133 * 329.99747 * 25 23 21 29 29 H 1.09004 * 109.47029 * 299.99925 * 1 2 3 30 30 H 1.08997 * 109.47083 * 59.99592 * 1 2 3 31 31 H 1.08999 * 109.47414 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46839 * 239.99555 * 2 1 3 33 33 H 1.08997 * 109.47083 * 120.00408 * 2 1 3 34 34 H 1.07998 * 125.57228 * 179.97438 * 6 4 3 35 35 H 1.08004 * 126.82750 * 180.25911 * 7 6 4 36 36 H 0.97001 * 120.00515 * 359.97438 * 11 9 8 37 37 H 1.09006 * 109.47607 * 300.00140 * 12 11 9 38 38 H 1.09006 * 109.47326 * 59.99929 * 12 11 9 39 39 H 1.08999 * 109.47618 * 180.02562 * 15 13 12 40 40 H 1.09004 * 109.47206 * 300.00525 * 15 13 12 41 41 H 1.08998 * 109.47020 * 60.00164 * 15 13 12 42 42 H 0.96994 * 120.00169 * 24.99302 * 16 13 12 43 43 H 1.08995 * 109.47220 * 300.00074 * 19 17 16 44 44 H 1.09004 * 109.46725 * 60.00000 * 19 17 16 45 45 H 0.96995 * 119.99858 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.3852 2.1315 -1.0880 5 1 2.3533 1.8019 -1.9997 6 6 2.7940 3.3816 -0.7246 7 6 2.7102 3.4946 0.6129 8 6 2.2080 2.2072 1.1050 9 6 1.9457 1.8366 2.5060 10 8 1.5277 0.7261 2.7732 11 7 2.1690 2.7280 3.4919 12 6 1.9076 2.3594 4.8855 13 6 2.2418 3.5419 5.7970 14 1 3.3111 3.7472 5.7487 15 6 1.8522 3.2020 7.2370 16 7 1.4972 4.7241 5.3560 17 6 1.9631 5.9573 5.6365 18 8 2.9985 6.0883 6.2543 19 6 1.1976 7.1733 5.1823 20 16 2.0724 8.6682 5.7081 21 6 0.9884 9.8992 5.0648 22 1 0.0955 9.6074 4.5318 23 6 1.2815 11.2441 5.2438 24 7 0.4719 12.1638 4.7627 25 14 2.8254 11.7488 6.1661 26 1 3.9518 11.8863 5.2081 27 1 2.5931 13.0481 6.8466 28 1 3.1590 10.7132 7.1769 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.1306 4.1537 -1.4005 35 1 2.9583 4.3623 1.2061 36 1 2.5028 3.6135 3.2788 37 1 0.8560 2.0971 5.0009 38 1 2.5272 1.5049 5.1577 39 1 2.0898 4.0445 7.8864 40 1 0.7827 2.9967 7.2853 41 1 2.4061 2.3224 7.5652 42 1 0.6691 4.6193 4.8620 43 1 1.1131 7.1646 4.0957 44 1 0.2013 7.1614 5.6243 45 1 0.6769 13.1036 4.8875 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001744650983.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:22 Heat of formation + Delta-G solvation = -72.087516 kcal Electronic energy + Delta-G solvation = -26399.704817 eV Core-core repulsion = 22542.421954 eV Total energy + Delta-G solvation = -3857.282864 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.20529 -40.95268 -39.94075 -37.38645 -34.94541 -34.65518 -34.31318 -32.80674 -31.82948 -30.06062 -29.25015 -27.83320 -27.41938 -24.51755 -23.25872 -22.72485 -21.63855 -21.49807 -20.47652 -19.85554 -18.56132 -18.01431 -17.68256 -17.08623 -16.93201 -16.62451 -16.38307 -16.19515 -15.78161 -15.28217 -15.19416 -14.95083 -14.82915 -14.71836 -14.59254 -14.08914 -14.00225 -13.88528 -13.55376 -13.32868 -13.32051 -13.26428 -13.02968 -12.99076 -12.94914 -12.57833 -12.31334 -12.01946 -11.85357 -11.84782 -11.15534 -10.97423 -10.88265 -10.51030 -10.20239 -10.12549 -9.72335 -9.11893 -8.96809 -8.50037 -6.20129 0.77035 1.00845 1.32593 1.48178 1.54145 1.57147 1.58522 2.09891 2.23920 2.27518 2.55406 2.59884 2.74072 2.88357 3.58884 3.80544 3.89017 4.04552 4.09637 4.14723 4.24122 4.31148 4.31965 4.44028 4.50322 4.54658 4.61150 4.70027 4.73157 4.77322 4.93391 4.98610 5.01147 5.08632 5.25572 5.32251 5.33530 5.45180 5.52443 5.72333 5.80784 5.99454 6.13400 6.44977 6.58220 6.69072 6.95332 7.19808 7.34976 8.62428 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012921 B = 0.002506 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.518580 B =11169.676074 C =12652.591432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.059 4.059 3 C 0.105 3.895 4 N -0.538 5.538 5 H 0.432 0.568 6 C -0.005 4.005 7 C -0.191 4.191 8 C -0.268 4.268 9 C 0.587 3.413 10 O -0.579 6.579 11 N -0.722 5.722 12 C 0.124 3.876 13 C 0.138 3.862 14 H 0.082 0.918 15 C -0.157 4.157 16 N -0.710 5.710 17 C 0.541 3.459 18 O -0.556 6.556 19 C -0.113 4.113 20 S -0.172 6.172 21 C -0.528 4.528 22 H 0.061 0.939 23 C 0.044 3.956 24 N -0.918 5.918 25 Si 0.915 3.085 26 H -0.262 1.262 27 H -0.261 1.261 28 H -0.236 1.236 29 H 0.038 0.962 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.200 0.800 35 H 0.147 0.853 36 H 0.406 0.594 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.045 0.955 40 H 0.073 0.927 41 H 0.087 0.913 42 H 0.414 0.586 43 H 0.114 0.886 44 H 0.110 0.890 45 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.546 -26.357 -11.353 28.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.097 4.097 3 C -0.015 4.015 4 N -0.134 5.134 5 H 0.272 0.728 6 C -0.133 4.133 7 C -0.215 4.215 8 C -0.278 4.278 9 C 0.378 3.622 10 O -0.461 6.461 11 N -0.374 5.374 12 C 0.000 4.000 13 C 0.034 3.966 14 H 0.100 0.900 15 C -0.216 4.216 16 N -0.364 5.364 17 C 0.326 3.674 18 O -0.434 6.434 19 C -0.264 4.264 20 S 0.055 5.945 21 C -0.675 4.675 22 H 0.080 0.920 23 C -0.161 4.161 24 N -0.556 5.556 25 Si 0.737 3.263 26 H -0.186 1.186 27 H -0.186 1.186 28 H -0.160 1.160 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.112 0.888 33 H 0.100 0.900 34 H 0.217 0.783 35 H 0.165 0.835 36 H 0.242 0.758 37 H 0.098 0.902 38 H 0.105 0.895 39 H 0.064 0.936 40 H 0.092 0.908 41 H 0.106 0.894 42 H 0.251 0.749 43 H 0.132 0.868 44 H 0.128 0.872 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.924 -26.759 -10.291 28.937 hybrid contribution -1.129 1.158 -1.021 1.913 sum 2.795 -25.601 -11.312 28.128 Atomic orbital electron populations 1.21602 0.93880 1.02525 1.01318 1.20268 0.96729 0.88568 1.04171 1.20516 0.99665 0.95201 0.86097 1.41619 1.50924 1.11704 1.09193 0.72813 1.22228 1.06141 0.88449 0.96478 1.22258 1.07052 0.97116 0.95064 1.20223 1.18065 0.97432 0.92083 1.17594 0.76173 0.83633 0.84814 1.90710 1.48346 1.22307 1.84783 1.45744 1.68019 1.17341 1.06247 1.21614 1.02639 0.96285 0.79464 1.21206 0.97329 0.83471 0.94641 0.89995 1.22074 1.03076 1.02338 0.94089 1.45873 1.27974 1.04011 1.58580 1.19872 0.84603 0.84439 0.78457 1.90701 1.25160 1.86569 1.40963 1.23284 1.03074 0.94061 1.05974 1.84685 1.35816 0.98584 1.75420 1.22471 1.10731 0.93247 1.41078 0.92042 1.25573 0.99653 0.95510 0.95355 1.70020 1.38586 1.01553 1.45475 0.85863 0.79801 0.79915 0.80771 1.18620 1.18570 1.15988 0.94318 0.92255 0.90908 0.88804 0.89971 0.78337 0.83514 0.75816 0.90194 0.89494 0.93600 0.90840 0.89433 0.74946 0.86766 0.87151 0.91422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.89 71.98 0.71 -1.26 16 2 C -0.06 -0.87 5.79 29.85 0.17 -0.70 16 3 C 0.11 1.80 6.43 41.78 0.27 2.07 16 4 N -0.54 -6.10 5.90 -182.73 -1.08 -7.18 16 5 H 0.43 1.84 8.96 -92.71 -0.83 1.01 16 6 C -0.01 -0.07 11.89 83.12 0.99 0.92 16 7 C -0.19 -3.46 10.56 23.62 0.25 -3.22 16 8 C -0.27 -5.69 6.29 -19.04 -0.12 -5.81 16 9 C 0.59 13.94 7.81 86.62 0.68 14.62 16 10 O -0.58 -16.30 14.76 -4.11 -0.06 -16.36 16 11 N -0.72 -14.14 5.38 -466.51 -2.51 -16.65 16 12 C 0.12 2.13 5.23 86.38 0.45 2.58 16 13 C 0.14 2.65 2.73 44.99 0.12 2.77 16 14 H 0.08 1.87 7.58 -2.39 -0.02 1.85 16 15 C -0.16 -2.78 9.48 71.98 0.68 -2.10 16 16 N -0.71 -15.36 4.52 -442.52 -2.00 -17.36 16 17 C 0.54 17.20 7.81 87.66 0.68 17.89 16 18 O -0.56 -22.18 15.53 -3.04 -0.05 -22.22 16 19 C -0.11 -4.06 6.16 71.24 0.44 -3.62 16 20 S -0.17 -8.43 18.55 -56.49 -1.05 -9.48 16 21 C -0.53 -30.26 10.04 67.95 0.68 -29.58 16 22 H 0.06 3.73 8.03 -2.91 -0.02 3.70 16 23 C 0.04 2.58 5.50 84.86 0.47 3.04 16 24 N -0.92 -55.58 13.97 21.65 0.30 -55.27 16 25 Si 0.91 44.52 27.74 68.60 1.90 46.42 16 26 H -0.26 -12.38 7.11 99.48 0.71 -11.67 16 27 H -0.26 -11.99 7.11 99.48 0.71 -11.29 16 28 H -0.24 -11.44 6.74 99.48 0.67 -10.77 16 29 H 0.04 0.77 7.96 -2.38 -0.02 0.75 16 30 H 0.06 0.71 8.14 -2.39 -0.02 0.70 16 31 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 33 H 0.08 1.59 6.75 -2.39 -0.02 1.57 16 34 H 0.20 1.33 8.06 -2.91 -0.02 1.30 16 35 H 0.15 2.49 7.70 -2.91 -0.02 2.47 16 36 H 0.41 7.61 7.26 -92.71 -0.67 6.94 16 37 H 0.08 1.32 8.14 -2.38 -0.02 1.31 16 38 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 39 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 41 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.41 7.08 8.60 -92.71 -0.80 6.28 16 43 H 0.11 3.73 8.14 -2.40 -0.02 3.71 16 44 H 0.11 3.70 8.14 -2.39 -0.02 3.68 16 45 H 0.28 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -78.45 393.53 0.63 -77.82 By element: Atomic # 1 Polarization: 23.98 SS G_CDS: -1.31 Total: 22.68 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: 6.48 Total: -2.40 kcal Atomic # 7 Polarization: -91.18 SS G_CDS: -5.29 Total: -96.46 kcal Atomic # 8 Polarization: -38.48 SS G_CDS: -0.11 Total: -38.58 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.90 Total: 46.42 kcal Atomic # 16 Polarization: -8.43 SS G_CDS: -1.05 Total: -9.48 kcal Total: -78.45 0.63 -77.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001744650983.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.733 kcal (2) G-P(sol) polarization free energy of solvation -78.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds