Wall clock time and date at job start Tue Mar 31 2020 22:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.32571 * 121.64446 * 2 1 4 4 S 1.77236 * 105.31799 * 180.19615 * 3 2 1 5 5 C 1.72215 * 94.84517 * 359.76448 * 4 3 2 6 6 O 1.21824 * 127.05068 * 180.02562 * 5 4 3 7 7 N 1.34242 * 105.88566 * 359.97438 * 5 4 3 8 8 C 1.46501 * 121.38046 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.46946 * 90.02409 * 8 7 5 10 10 C 1.50706 * 109.46977 * 180.02562 * 9 8 7 11 11 O 1.21281 * 119.99975 * 359.97438 * 10 9 8 12 12 N 1.34772 * 120.00005 * 180.02562 * 10 9 8 13 13 C 1.47028 * 125.64556 * 359.96998 * 12 10 9 14 14 C 1.54323 * 107.26890 * 181.10627 * 13 12 10 15 15 C 1.55158 * 102.94316 * 22.19439 * 14 13 12 16 16 H 1.08996 * 111.00437 * 82.61034 * 15 14 13 17 17 C 1.53001 * 111.00640 * 206.42094 * 15 14 13 18 18 N 1.46490 * 109.47264 * 293.54603 * 17 15 14 19 19 C 1.36935 * 120.00121 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00139 * 0.02562 * 19 18 17 21 21 C 1.38816 * 120.00401 * 180.02562 * 19 18 17 22 22 N 1.31624 * 119.99569 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00172 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47055 * 180.02562 * 23 21 19 25 25 H 1.48505 * 109.46653 * 299.99639 * 23 21 19 26 26 H 1.48495 * 109.47483 * 60.00002 * 23 21 19 27 27 C 1.47422 * 125.65030 * 180.02562 * 12 10 9 28 28 H 1.08992 * 109.46927 * 270.24127 * 1 2 3 29 29 H 1.08998 * 109.46991 * 30.23964 * 1 2 3 30 30 H 1.09001 * 109.46833 * 150.23646 * 1 2 3 31 31 H 1.07997 * 127.33957 * 359.93874 * 3 2 1 32 32 H 1.09001 * 109.46933 * 330.02704 * 8 7 5 33 33 H 1.08998 * 109.47429 * 210.03122 * 8 7 5 34 34 H 1.09001 * 109.47064 * 60.00375 * 9 8 7 35 35 H 1.09001 * 109.47446 * 300.00093 * 9 8 7 36 36 H 1.08999 * 109.87792 * 61.69300 * 13 12 10 37 37 H 1.08993 * 110.01543 * 300.59470 * 13 12 10 38 38 H 1.09000 * 110.72598 * 263.83374 * 14 13 12 39 39 H 1.08998 * 110.72391 * 140.55728 * 14 13 12 40 40 H 1.09003 * 109.46836 * 173.54310 * 17 15 14 41 41 H 1.08999 * 109.47071 * 53.55349 * 17 15 14 42 42 H 0.97000 * 120.00577 * 0.02562 * 18 17 15 43 43 H 0.97001 * 119.99885 * 359.97438 * 22 21 19 44 44 H 1.08997 * 110.36669 * 36.98835 * 27 12 10 45 45 H 1.08994 * 110.36588 * 274.66578 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2026 1.1286 0.0000 4 16 3.9035 0.6304 -0.0059 5 6 3.5607 -1.0573 -0.0008 6 8 4.3674 -1.9702 -0.0017 7 7 2.2222 -1.1604 0.0054 8 6 1.5577 -2.4660 0.0105 9 6 1.3324 -2.9179 1.4548 10 6 0.6494 -4.2613 1.4601 11 8 0.3699 -4.8035 0.4119 12 7 0.3482 -4.8595 2.6296 13 6 0.6284 -4.3165 3.9669 14 6 0.1345 -5.3553 4.9958 15 6 0.1181 -6.6738 4.1781 16 1 1.1105 -7.1229 4.1410 17 6 -0.9055 -7.6588 4.7463 18 7 -0.4793 -8.0910 6.0796 19 6 -1.2439 -8.9787 6.7885 20 1 -2.1608 -9.3606 6.3646 21 6 -0.8404 -9.3878 8.0522 22 7 0.2769 -8.9220 8.5691 23 14 -1.8830 -10.5994 9.0189 24 1 -1.2385 -10.8721 10.3287 25 1 -3.2329 -10.0222 9.2427 26 1 -2.0068 -11.8663 8.2543 27 6 -0.3157 -6.1672 2.7799 28 1 -0.3633 0.0043 1.0276 29 1 -0.3633 0.8878 -0.5175 30 1 -0.3633 -0.8921 -0.5102 31 1 1.8153 2.1367 -0.0009 32 1 2.1840 -3.1944 -0.5046 33 1 0.5977 -2.3871 -0.4995 34 1 0.7062 -2.1894 1.9699 35 1 2.2925 -2.9968 1.9649 36 1 0.0949 -3.3760 4.1043 37 1 1.6997 -4.1559 4.0874 38 1 -0.8673 -5.1058 5.3454 39 1 0.8288 -5.4293 5.8328 40 1 -0.9789 -8.5257 4.0896 41 1 -1.8784 -7.1723 4.8157 42 1 0.3440 -7.7478 6.4607 43 1 0.8184 -8.2932 8.0669 44 1 0.0224 -6.8555 2.0054 45 1 -1.3985 -6.0499 2.7380 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752940532.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:39 Heat of formation + Delta-G solvation = -25.665409 kcal Electronic energy + Delta-G solvation = -26569.373857 eV Core-core repulsion = 22714.104006 eV Total energy + Delta-G solvation = -3855.269850 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.51516 -40.18111 -38.03572 -37.84194 -35.00925 -33.87176 -32.53524 -31.66313 -30.22833 -29.30634 -28.46095 -25.90029 -24.72593 -23.61853 -22.86620 -22.61803 -20.74949 -20.19499 -19.39816 -18.50009 -17.89019 -17.31284 -16.94330 -16.70370 -16.40490 -15.73599 -15.49866 -15.02301 -14.67347 -14.35581 -14.19542 -14.09796 -14.08476 -13.79489 -13.64462 -13.34051 -13.27291 -13.00187 -12.66342 -12.60365 -12.56603 -11.89589 -11.84535 -11.70118 -11.55502 -11.10320 -10.86584 -10.72308 -10.57110 -10.47175 -10.44791 -10.21678 -10.01084 -9.93659 -9.22054 -8.93066 -8.81698 -8.38266 -7.05820 -6.14673 -3.14808 0.54778 0.93814 1.36982 1.72170 2.24943 2.35750 2.81950 3.49510 3.52928 3.70422 3.94644 4.21119 4.25213 4.32088 4.53810 4.57664 4.60727 4.75343 4.78408 4.86993 4.92790 4.95240 5.02610 5.10287 5.15096 5.20419 5.31584 5.44112 5.47619 5.57464 5.66747 5.74213 5.85199 5.87052 5.87654 6.02492 6.18229 6.26514 6.29038 6.57666 6.68817 6.90768 7.30412 7.76512 7.88198 8.71559 9.17865 10.04266 10.18783 11.33807 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.026174 B = 0.001835 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.502456 B =15256.326575 C =15508.877294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.103 3.897 3 C -0.240 4.240 4 S 0.000 6.000 5 C 0.479 3.521 6 O -0.468 6.468 7 N -0.533 5.533 8 C 0.116 3.884 9 C -0.152 4.152 10 C 0.534 3.466 11 O -0.544 6.544 12 N -0.614 5.614 13 C 0.098 3.902 14 C -0.121 4.121 15 C -0.108 4.108 16 H 0.084 0.916 17 C 0.170 3.830 18 N -0.742 5.742 19 C -0.332 4.332 20 H 0.065 0.935 21 C -0.045 4.045 22 N -0.943 5.943 23 Si 1.081 2.919 24 H -0.285 1.285 25 H -0.295 1.295 26 H -0.295 1.295 27 C 0.114 3.886 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.192 0.808 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.023 0.977 41 H 0.023 0.977 42 H 0.367 0.633 43 H 0.254 0.746 44 H 0.079 0.921 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.848 24.228 -18.143 30.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.008 4.008 3 C -0.378 4.378 4 S 0.243 5.757 5 C 0.161 3.839 6 O -0.347 6.347 7 N -0.254 5.254 8 C -0.009 4.009 9 C -0.193 4.193 10 C 0.322 3.678 11 O -0.422 6.422 12 N -0.347 5.347 13 C -0.025 4.025 14 C -0.159 4.159 15 C -0.127 4.127 16 H 0.102 0.898 17 C 0.042 3.958 18 N -0.388 5.388 19 C -0.463 4.463 20 H 0.083 0.917 21 C -0.243 4.243 22 N -0.589 5.589 23 Si 0.911 3.089 24 H -0.210 1.210 25 H -0.222 1.222 26 H -0.222 1.222 27 C -0.009 4.009 28 H 0.105 0.895 29 H 0.110 0.890 30 H 0.098 0.902 31 H 0.209 0.791 32 H 0.123 0.877 33 H 0.123 0.877 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.100 0.900 39 H 0.104 0.896 40 H 0.041 0.959 41 H 0.041 0.959 42 H 0.200 0.800 43 H 0.065 0.935 44 H 0.097 0.903 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.094 23.110 -17.443 29.029 hybrid contribution -0.802 0.304 -1.195 1.471 sum 1.292 23.413 -18.638 29.954 Atomic orbital electron populations 1.20842 0.86522 1.04755 1.04216 1.19488 0.95923 0.84871 1.00496 1.24916 0.93180 1.01337 1.18341 1.85243 1.08477 1.01148 1.80871 1.21652 0.83764 0.95786 0.82733 1.91001 1.48549 1.42387 1.52777 1.46153 1.06407 1.07813 1.65030 1.21640 1.00100 0.82408 0.96759 1.21938 1.03068 0.95651 0.98661 1.19856 0.78903 0.86516 0.82526 1.90729 1.54674 1.66170 1.30632 1.48524 1.59161 1.21332 1.05692 1.22174 1.00690 0.97770 0.81900 1.22641 1.02955 0.93261 0.97006 1.22600 1.01246 0.95885 0.93019 0.89810 1.20472 0.93952 0.93798 0.87540 1.42303 1.27328 1.54233 1.14911 1.20023 1.04925 1.20872 1.00505 0.91730 1.25798 1.00024 1.03111 0.95353 1.70898 1.14327 1.33752 1.39900 0.83233 0.74329 0.75137 0.76183 1.21013 1.22247 1.22234 1.22271 0.97265 0.83546 0.97803 0.89465 0.88987 0.90193 0.79077 0.87699 0.87730 0.88266 0.88160 0.91392 0.91350 0.90041 0.89624 0.95885 0.95872 0.79980 0.93470 0.90258 0.90955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.31 9.70 36.01 0.35 0.04 16 2 C 0.10 0.60 6.59 -82.51 -0.54 0.06 16 3 C -0.24 -1.28 11.25 28.83 0.32 -0.95 16 4 S 0.00 0.00 22.97 -107.50 -2.47 -2.47 16 5 C 0.48 5.25 8.27 53.82 0.45 5.70 16 6 O -0.47 -6.80 17.55 5.08 0.09 -6.71 16 7 N -0.53 -4.50 2.60 -117.28 -0.31 -4.80 16 8 C 0.12 1.01 4.56 -4.04 -0.02 0.99 16 9 C -0.15 -1.32 5.22 -27.88 -0.15 -1.47 16 10 C 0.53 6.47 7.85 -10.98 -0.09 6.39 16 11 O -0.54 -8.31 16.24 5.56 0.09 -8.22 16 12 N -0.61 -7.45 3.33 -170.52 -0.57 -8.01 16 13 C 0.10 1.01 6.49 -3.06 -0.02 0.99 16 14 C -0.12 -1.58 6.13 -24.90 -0.15 -1.73 16 15 C -0.11 -1.62 3.10 -88.47 -0.27 -1.90 16 16 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 17 C 0.17 3.27 5.71 -4.05 -0.02 3.25 16 18 N -0.74 -18.10 5.45 -59.91 -0.33 -18.43 16 19 C -0.33 -9.26 9.99 -15.06 -0.15 -9.41 16 20 H 0.06 1.77 7.83 -52.49 -0.41 1.36 16 21 C -0.05 -1.31 5.50 -17.43 -0.10 -1.40 16 22 N -0.94 -28.78 13.70 55.49 0.76 -28.02 16 23 Si 1.08 25.65 29.92 -169.99 -5.09 20.56 16 24 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.30 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 27 C 0.11 1.53 6.38 -2.53 -0.02 1.52 16 28 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.09 0.12 8.10 -51.93 -0.42 -0.31 16 30 H 0.08 0.26 6.18 -51.93 -0.32 -0.06 16 31 H 0.19 0.45 8.06 -52.49 -0.42 0.03 16 32 H 0.10 1.13 7.76 -51.93 -0.40 0.73 16 33 H 0.10 0.76 6.07 -51.93 -0.32 0.44 16 34 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 1.11 8.01 -51.93 -0.42 0.69 16 39 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.02 0.45 8.11 -51.93 -0.42 0.03 16 42 H 0.37 9.06 6.37 -40.82 -0.26 8.80 16 43 H 0.25 7.58 6.77 -40.82 -0.28 7.30 16 44 H 0.08 1.13 8.04 -51.93 -0.42 0.71 16 45 H 0.07 0.95 8.04 -51.93 -0.42 0.53 16 LS Contribution 384.26 15.07 5.79 5.79 Total: -1.00 -35.34 384.26 -9.11 -44.45 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -6.68 Total: 3.79 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -0.41 Total: 2.07 kcal Atomic # 7 Polarization: -58.82 SS G_CDS: -0.44 Total: -59.26 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: 0.18 Total: -14.93 kcal Atomic # 14 Polarization: 25.65 SS G_CDS: -5.09 Total: 20.56 kcal Atomic # 16 Polarization: 0.00 SS G_CDS: -2.47 Total: -2.47 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.34 -9.11 -44.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752940532.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.782 kcal (2) G-P(sol) polarization free energy of solvation -35.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds