Wall clock time and date at job start Tue Mar 31 2020 22:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.32571 * 121.64446 * 2 1 4 4 S 1.77236 * 105.31799 * 180.19615 * 3 2 1 5 5 C 1.72215 * 94.84517 * 359.76448 * 4 3 2 6 6 O 1.21824 * 127.05068 * 180.02562 * 5 4 3 7 7 N 1.34242 * 105.88566 * 359.97438 * 5 4 3 8 8 C 1.46501 * 121.38046 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.46946 * 90.02409 * 8 7 5 10 10 C 1.50706 * 109.46977 * 180.02562 * 9 8 7 11 11 O 1.21281 * 119.99975 * 359.97438 * 10 9 8 12 12 N 1.34772 * 120.00005 * 180.02562 * 10 9 8 13 13 C 1.47028 * 125.64556 * 359.96998 * 12 10 9 14 14 C 1.54323 * 107.26890 * 181.10627 * 13 12 10 15 15 C 1.55158 * 102.94316 * 22.19439 * 14 13 12 16 16 H 1.08996 * 111.00437 * 82.61034 * 15 14 13 17 17 C 1.53001 * 111.00640 * 206.42094 * 15 14 13 18 18 N 1.46490 * 109.47264 * 293.54603 * 17 15 14 19 19 C 1.36935 * 120.00121 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00139 * 0.02562 * 19 18 17 21 21 C 1.38816 * 120.00401 * 180.02562 * 19 18 17 22 22 N 1.31624 * 119.99569 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00172 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47055 * 180.02562 * 23 21 19 25 25 H 1.48505 * 109.46653 * 299.99639 * 23 21 19 26 26 H 1.48495 * 109.47483 * 60.00002 * 23 21 19 27 27 C 1.47422 * 125.65030 * 180.02562 * 12 10 9 28 28 H 1.08992 * 109.46927 * 270.24127 * 1 2 3 29 29 H 1.08998 * 109.46991 * 30.23964 * 1 2 3 30 30 H 1.09001 * 109.46833 * 150.23646 * 1 2 3 31 31 H 1.07997 * 127.33957 * 359.93874 * 3 2 1 32 32 H 1.09001 * 109.46933 * 330.02704 * 8 7 5 33 33 H 1.08998 * 109.47429 * 210.03122 * 8 7 5 34 34 H 1.09001 * 109.47064 * 60.00375 * 9 8 7 35 35 H 1.09001 * 109.47446 * 300.00093 * 9 8 7 36 36 H 1.08999 * 109.87792 * 61.69300 * 13 12 10 37 37 H 1.08993 * 110.01543 * 300.59470 * 13 12 10 38 38 H 1.09000 * 110.72598 * 263.83374 * 14 13 12 39 39 H 1.08998 * 110.72391 * 140.55728 * 14 13 12 40 40 H 1.09003 * 109.46836 * 173.54310 * 17 15 14 41 41 H 1.08999 * 109.47071 * 53.55349 * 17 15 14 42 42 H 0.97000 * 120.00577 * 0.02562 * 18 17 15 43 43 H 0.97001 * 119.99885 * 359.97438 * 22 21 19 44 44 H 1.08997 * 110.36669 * 36.98835 * 27 12 10 45 45 H 1.08994 * 110.36588 * 274.66578 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2026 1.1286 0.0000 4 16 3.9035 0.6304 -0.0059 5 6 3.5607 -1.0573 -0.0008 6 8 4.3674 -1.9702 -0.0017 7 7 2.2222 -1.1604 0.0054 8 6 1.5577 -2.4660 0.0105 9 6 1.3324 -2.9179 1.4548 10 6 0.6494 -4.2613 1.4601 11 8 0.3699 -4.8035 0.4119 12 7 0.3482 -4.8595 2.6296 13 6 0.6284 -4.3165 3.9669 14 6 0.1345 -5.3553 4.9958 15 6 0.1181 -6.6738 4.1781 16 1 1.1105 -7.1229 4.1410 17 6 -0.9055 -7.6588 4.7463 18 7 -0.4793 -8.0910 6.0796 19 6 -1.2439 -8.9787 6.7885 20 1 -2.1608 -9.3606 6.3646 21 6 -0.8404 -9.3878 8.0522 22 7 0.2769 -8.9220 8.5691 23 14 -1.8830 -10.5994 9.0189 24 1 -1.2385 -10.8721 10.3287 25 1 -3.2329 -10.0222 9.2427 26 1 -2.0068 -11.8663 8.2543 27 6 -0.3157 -6.1672 2.7799 28 1 -0.3633 0.0043 1.0276 29 1 -0.3633 0.8878 -0.5175 30 1 -0.3633 -0.8921 -0.5102 31 1 1.8153 2.1367 -0.0009 32 1 2.1840 -3.1944 -0.5046 33 1 0.5977 -2.3871 -0.4995 34 1 0.7062 -2.1894 1.9699 35 1 2.2925 -2.9968 1.9649 36 1 0.0949 -3.3760 4.1043 37 1 1.6997 -4.1559 4.0874 38 1 -0.8673 -5.1058 5.3454 39 1 0.8288 -5.4293 5.8328 40 1 -0.9789 -8.5257 4.0896 41 1 -1.8784 -7.1723 4.8157 42 1 0.3440 -7.7478 6.4607 43 1 0.8184 -8.2932 8.0669 44 1 0.0224 -6.8555 2.0054 45 1 -1.3985 -6.0499 2.7380 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752940532.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:38 Heat of formation + Delta-G solvation = -49.134220 kcal Electronic energy + Delta-G solvation = -26570.391541 eV Core-core repulsion = 22714.104006 eV Total energy + Delta-G solvation = -3856.287534 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.18810 -41.17524 -39.08251 -38.70672 -36.77575 -34.59909 -34.02255 -32.35647 -31.66887 -30.38407 -29.15478 -27.07919 -25.88613 -24.75251 -24.20395 -23.70987 -21.50786 -21.36047 -20.33958 -19.38466 -19.07770 -18.70644 -17.85305 -17.60612 -17.32292 -16.71117 -16.41220 -16.24712 -15.79941 -15.65747 -15.29740 -15.11729 -15.03105 -14.66422 -14.57172 -14.47816 -14.07141 -13.97592 -13.76625 -13.61935 -13.18610 -13.09233 -12.80476 -12.59291 -12.46424 -12.33253 -12.23710 -12.07523 -11.92466 -11.86818 -11.74710 -11.31838 -11.26238 -11.11179 -10.93713 -10.63427 -9.81433 -9.12548 -8.98719 -8.40586 -5.34802 -0.15071 0.35670 0.84992 1.08336 1.41128 1.56636 1.59217 1.68648 1.85146 1.94207 2.70608 3.19356 3.38799 3.46874 3.51833 3.55494 3.60762 3.75210 3.79367 4.09158 4.14254 4.20690 4.22220 4.28255 4.38542 4.43022 4.51345 4.55344 4.63034 4.69274 4.73921 4.76901 4.77886 4.88678 4.94708 5.00304 5.10421 5.12655 5.28626 5.29507 5.57680 5.71304 6.20132 6.35126 6.49593 6.92201 7.08319 7.98777 8.09113 9.11592 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.026174 B = 0.001835 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.502456 B =15256.326575 C =15508.877294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.091 3.909 3 C -0.221 4.221 4 S -0.004 6.004 5 C 0.459 3.541 6 O -0.523 6.523 7 N -0.529 5.529 8 C 0.119 3.881 9 C -0.139 4.139 10 C 0.533 3.467 11 O -0.580 6.580 12 N -0.615 5.615 13 C 0.104 3.896 14 C -0.117 4.117 15 C -0.101 4.101 16 H 0.072 0.928 17 C 0.170 3.830 18 N -0.753 5.753 19 C -0.336 4.336 20 H 0.066 0.934 21 C -0.104 4.104 22 N -0.974 5.974 23 Si 1.128 2.872 24 H -0.293 1.293 25 H -0.276 1.276 26 H -0.280 1.280 27 C 0.121 3.879 28 H 0.101 0.899 29 H 0.115 0.885 30 H 0.076 0.924 31 H 0.229 0.771 32 H 0.075 0.925 33 H 0.122 0.878 34 H 0.133 0.867 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.016 0.984 41 H 0.029 0.971 42 H 0.363 0.637 43 H 0.245 0.755 44 H 0.067 0.933 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.095 26.802 -18.374 32.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.018 4.018 3 C -0.358 4.358 4 S 0.239 5.761 5 C 0.143 3.857 6 O -0.407 6.407 7 N -0.249 5.249 8 C -0.006 4.006 9 C -0.179 4.179 10 C 0.323 3.677 11 O -0.460 6.460 12 N -0.348 5.348 13 C -0.018 4.018 14 C -0.155 4.155 15 C -0.120 4.120 16 H 0.091 0.909 17 C 0.044 3.956 18 N -0.398 5.398 19 C -0.467 4.467 20 H 0.084 0.916 21 C -0.295 4.295 22 N -0.622 5.622 23 Si 0.952 3.048 24 H -0.219 1.219 25 H -0.202 1.202 26 H -0.206 1.206 27 C -0.003 4.003 28 H 0.119 0.881 29 H 0.133 0.867 30 H 0.095 0.905 31 H 0.245 0.755 32 H 0.093 0.907 33 H 0.140 0.860 34 H 0.151 0.849 35 H 0.114 0.886 36 H 0.119 0.881 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.034 0.966 41 H 0.047 0.953 42 H 0.195 0.805 43 H 0.055 0.945 44 H 0.086 0.914 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.107 25.749 -17.709 31.251 hybrid contribution -0.233 -0.417 -1.208 1.299 sum -0.127 25.332 -18.917 31.616 Atomic orbital electron populations 1.20979 0.83907 1.05767 1.05403 1.20021 0.97354 0.83839 1.00591 1.25447 0.90572 1.02769 1.16979 1.85264 1.11410 0.99161 1.80235 1.22052 0.84328 0.96375 0.82976 1.90958 1.50073 1.44290 1.55383 1.46171 1.05813 1.08608 1.64310 1.21546 1.00143 0.82169 0.96789 1.21868 1.02921 0.94237 0.98875 1.20396 0.78264 0.87314 0.81755 1.90715 1.56161 1.67284 1.31874 1.48573 1.58935 1.20720 1.06555 1.22237 1.01870 0.97846 0.79821 1.22579 1.02783 0.92854 0.97302 1.22378 0.99268 0.95962 0.94409 0.90938 1.20572 0.95332 0.94490 0.85243 1.42481 1.26946 1.53891 1.16503 1.20379 1.04968 1.20646 1.00730 0.91613 1.27204 1.00575 1.04773 0.96950 1.71000 1.15631 1.35088 1.40466 0.82627 0.73662 0.73884 0.74600 1.21914 1.20165 1.20623 1.22073 0.97734 0.84327 0.96124 0.88070 0.86659 0.90507 0.75458 0.90653 0.86005 0.84913 0.88586 0.88083 0.90136 0.90310 0.90449 0.96609 0.95333 0.80497 0.94469 0.91408 0.90263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.19 9.70 71.24 0.69 0.50 16 2 C 0.09 0.78 6.59 40.71 0.27 1.05 16 3 C -0.22 -1.59 11.25 66.67 0.75 -0.84 16 4 S 0.00 -0.06 22.97 -56.49 -1.30 -1.36 16 5 C 0.46 10.16 8.27 129.87 1.07 11.23 16 6 O -0.52 -16.14 17.55 -4.74 -0.08 -16.22 16 7 N -0.53 -8.27 2.60 -643.41 -1.68 -9.95 16 8 C 0.12 1.97 4.56 86.38 0.39 2.36 16 9 C -0.14 -2.14 5.22 29.85 0.16 -1.99 16 10 C 0.53 12.24 7.85 87.66 0.69 12.93 16 11 O -0.58 -17.55 16.24 -3.03 -0.05 -17.60 16 12 N -0.61 -13.92 3.33 -811.80 -2.70 -16.62 16 13 C 0.10 1.90 6.49 86.73 0.56 2.46 16 14 C -0.12 -2.93 6.13 31.78 0.19 -2.73 16 15 C -0.10 -3.00 3.10 -9.40 -0.03 -3.03 16 16 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 17 C 0.17 6.56 5.71 86.38 0.49 7.05 16 18 N -0.75 -37.13 5.45 -343.47 -1.87 -39.00 16 19 C -0.34 -18.74 9.99 84.03 0.84 -17.90 16 20 H 0.07 3.58 7.83 -2.91 -0.02 3.56 16 21 C -0.10 -5.97 5.50 84.86 0.47 -5.50 16 22 N -0.97 -60.19 13.70 21.65 0.30 -59.89 16 23 Si 1.13 51.37 29.92 68.60 2.05 53.42 16 24 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 25 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 26 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 27 C 0.12 3.18 6.38 86.86 0.55 3.73 16 28 H 0.10 -0.04 8.14 -2.39 -0.02 -0.06 16 29 H 0.11 -0.28 8.10 -2.39 -0.02 -0.30 16 30 H 0.08 0.24 6.18 -2.39 -0.01 0.22 16 31 H 0.23 -0.09 8.06 -2.91 -0.02 -0.12 16 32 H 0.07 1.72 7.76 -2.39 -0.02 1.70 16 33 H 0.12 1.57 6.07 -2.39 -0.01 1.56 16 34 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.08 2.02 8.01 -2.39 -0.02 2.01 16 39 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.03 1.09 8.11 -2.39 -0.02 1.07 16 42 H 0.36 18.31 6.37 -92.71 -0.59 17.72 16 43 H 0.24 14.97 6.77 -92.71 -0.63 14.34 16 44 H 0.07 1.94 8.04 -2.39 -0.02 1.92 16 45 H 0.08 1.99 8.04 -2.39 -0.02 1.97 16 Total: -1.00 -79.39 384.26 2.33 -77.06 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: 0.56 Total: 20.84 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: 7.10 Total: 9.33 kcal Atomic # 7 Polarization: -119.51 SS G_CDS: -5.95 Total: -125.46 kcal Atomic # 8 Polarization: -33.69 SS G_CDS: -0.13 Total: -33.83 kcal Atomic # 14 Polarization: 51.37 SS G_CDS: 2.05 Total: 53.42 kcal Atomic # 16 Polarization: -0.06 SS G_CDS: -1.30 Total: -1.36 kcal Total: -79.39 2.33 -77.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752940532.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.923 kcal (2) G-P(sol) polarization free energy of solvation -79.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds