Wall clock time and date at job start Tue Mar 31 2020 22:34:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50699 * 1
3 3 N 1.30260 * 125.61801 * 2 1
4 4 C 1.34485 * 108.69814 * 179.97438 * 3 2 1
5 5 C 1.34330 * 107.66950 * 359.97438 * 4 3 2
6 6 C 1.50703 * 126.44066 * 179.97438 * 5 4 3
7 7 N 1.46898 * 109.46913 * 90.00309 * 6 5 4
8 8 C 1.47897 * 111.00262 * 69.87404 * 7 6 5
9 9 C 1.53987 * 107.05645 * 214.15419 * 8 7 6
10 10 C 1.54590 * 105.14389 * 1.22247 * 9 8 7
11 11 H 1.08999 * 110.72762 * 263.60239 * 10 9 8
12 12 C 1.53002 * 110.72738 * 140.49017 * 10 9 8
13 13 N 1.46502 * 109.46626 * 66.45349 * 12 10 9
14 14 C 1.34782 * 119.99811 * 179.97438 * 13 12 10
15 15 O 1.21285 * 119.99968 * 0.02562 * 14 13 12
16 16 C 1.50702 * 120.00067 * 180.02562 * 14 13 12
17 17 S 1.80998 * 109.47216 * 180.02562 * 16 14 13
18 18 C 1.76200 * 99.99817 * 180.02562 * 17 16 14
19 19 H 1.08003 * 120.00364 * 359.97438 * 18 17 16
20 20 C 1.38799 * 119.99954 * 180.02562 * 18 17 16
21 21 N 1.31632 * 119.99803 * 359.97438 * 20 18 17
22 22 Si 1.86799 * 120.00214 * 179.97438 * 20 18 17
23 23 H 1.48502 * 109.46776 * 60.00226 * 22 20 18
24 24 H 1.48498 * 109.47115 * 179.97438 * 22 20 18
25 25 H 1.48495 * 109.47415 * 300.00180 * 22 20 18
26 26 C 1.48535 * 110.99867 * 312.47340 * 7 6 5
27 27 O 1.33967 * 125.62312 * 179.97438 * 2 1 3
28 28 H 1.09004 * 109.46566 * 90.02465 * 1 2 3
29 29 H 1.09003 * 109.46769 * 210.02116 * 1 2 3
30 30 H 1.09001 * 109.47149 * 330.02647 * 1 2 3
31 31 H 1.08003 * 126.15957 * 179.97438 * 4 3 2
32 32 H 1.08997 * 109.46564 * 210.00722 * 6 5 4
33 33 H 1.09004 * 109.46906 * 329.99745 * 6 5 4
34 34 H 1.09001 * 109.91191 * 333.50715 * 8 7 6
35 35 H 1.08998 * 109.91603 * 94.60325 * 8 7 6
36 36 H 1.09008 * 110.30832 * 120.14382 * 9 8 7
37 37 H 1.09000 * 110.30735 * 242.30709 * 9 8 7
38 38 H 1.08996 * 109.47780 * 186.45604 * 12 10 9
39 39 H 1.09001 * 109.47368 * 306.46330 * 12 10 9
40 40 H 0.97000 * 120.00352 * 0.02562 * 13 12 10
41 41 H 1.09005 * 109.46884 * 300.00718 * 16 14 13
42 42 H 1.09001 * 109.46777 * 59.99692 * 16 14 13
43 43 H 0.97006 * 119.99864 * 180.02562 * 21 20 18
44 44 H 1.08999 * 110.67013 * 278.15727 * 26 7 6
45 45 H 1.08995 * 110.66622 * 41.29050 * 26 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2656 1.0589 0.0000
4 6 3.5522 0.6675 0.0006
5 6 3.5698 -0.6757 0.0015
6 6 4.7938 -1.5549 0.0018
7 7 5.1917 -1.8396 1.3869
8 6 4.2152 -2.7339 2.0458
9 6 4.1509 -2.3191 3.5274
10 6 5.1220 -1.1230 3.6544
11 1 6.0982 -1.4545 4.0082
12 6 4.5455 -0.0539 4.5848
13 7 4.4715 -0.5824 5.9491
14 6 3.9924 0.1886 6.9454
15 8 3.6220 1.3197 6.7123
16 6 3.9168 -0.3548 8.3490
17 16 3.2347 0.9098 9.4497
18 6 3.2590 0.0315 10.9770
19 1 3.6263 -0.9837 11.0104
20 6 2.8052 0.6438 12.1370
21 7 2.3571 1.8808 12.0962
22 14 2.8303 -0.2876 13.7561
23 1 4.2255 -0.6799 14.0797
24 1 2.2981 0.5821 14.8357
25 1 1.9881 -1.5050 13.6400
26 6 5.2156 -0.5968 2.2001
27 8 2.2873 -1.0890 0.0005
28 1 -0.3632 -0.0004 -1.0277
29 1 -0.3633 -0.8898 0.5142
30 1 -0.3633 0.8902 0.5134
31 1 4.4157 1.3163 0.0003
32 1 4.5695 -2.4899 -0.5114
33 1 5.6080 -1.0444 -0.5126
34 1 3.2345 -2.6168 1.5846
35 1 4.5440 -3.7696 1.9610
36 1 3.1382 -2.0141 3.7913
37 1 4.4775 -3.1408 4.1647
38 1 5.1889 0.8258 4.5703
39 1 3.5463 0.2211 4.2471
40 1 4.7681 -1.4869 6.1357
41 1 3.2733 -1.2345 8.3639
42 1 4.9161 -0.6300 8.6863
43 1 2.0403 2.3089 12.9070
44 1 6.1486 -0.0545 2.0465
45 1 4.3591 0.0343 1.9634
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001753118636.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:34:37
Heat of formation + Delta-G solvation = -40.172634 kcal
Electronic energy + Delta-G solvation = -26486.720554 eV
Core-core repulsion = 22630.821623 eV
Total energy + Delta-G solvation = -3855.898931 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-44.45746 -40.89949 -39.97606 -36.40307 -35.85335 -34.58992 -34.19342 -32.60312
-31.27978 -30.13837 -29.04423 -27.70982 -26.80109 -25.08957 -23.50022 -22.53580
-21.93824 -21.39989 -21.32696 -19.83073 -18.22150 -18.00967 -17.78416 -17.51938
-17.03512 -16.88111 -16.54627 -16.24938 -15.85432 -15.65744 -15.28475 -14.98578
-14.72029 -14.66145 -14.45994 -14.16042 -14.07363 -13.86236 -13.54181 -13.39827
-13.18824 -13.17360 -12.87770 -12.86463 -12.62685 -12.50444 -12.37122 -12.16796
-11.99213 -11.74509 -11.61436 -11.53215 -11.13166 -10.99322 -10.28813 -10.17672
-9.81271 -9.64227 -8.68016 -8.34787 -6.13488 0.34401 1.25969 1.44028
1.46386 1.56096 1.58276 1.59702 1.64753 2.22704 2.27896 2.88978
2.99225 3.12648 3.30385 3.54969 3.56735 3.64891 3.83536 3.98664
3.99402 4.08862 4.20572 4.26863 4.31519 4.38570 4.49117 4.49761
4.55553 4.57877 4.59334 4.65046 4.71019 4.74733 4.84743 4.94753
4.97563 4.98917 5.10094 5.21486 5.30864 5.39154 5.41236 5.69445
5.79817 6.19319 6.47425 6.67637 7.06168 7.21499 8.74257
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.018591 B = 0.002031 C = 0.001935
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1505.706682 B =13780.292370 C =14466.266494
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.060 4.060
2 C 0.181 3.819
3 N -0.521 5.521
4 C -0.042 4.042
5 C -0.083 4.083
6 C 0.130 3.870
7 N -0.495 5.495
8 C 0.032 3.968
9 C -0.128 4.128
10 C -0.090 4.090
11 H 0.109 0.891
12 C 0.135 3.865
13 N -0.709 5.709
14 C 0.532 3.468
15 O -0.568 6.568
16 C -0.128 4.128
17 S -0.155 6.155
18 C -0.546 4.546
19 H 0.084 0.916
20 C 0.012 3.988
21 N -0.912 5.912
22 Si 1.000 3.000
23 H -0.261 1.261
24 H -0.279 1.279
25 H -0.261 1.261
26 C 0.031 3.969
27 O -0.208 6.208
28 H 0.113 0.887
29 H 0.102 0.898
30 H 0.101 0.899
31 H 0.196 0.804
32 H 0.106 0.894
33 H 0.135 0.865
34 H 0.038 0.962
35 H 0.098 0.902
36 H 0.053 0.947
37 H 0.094 0.906
38 H 0.061 0.939
39 H 0.042 0.958
40 H 0.417 0.583
41 H 0.110 0.890
42 H 0.112 0.888
43 H 0.271 0.729
44 H 0.104 0.896
45 H 0.045 0.955
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.943 -13.864 -28.315 31.912
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.117 4.117
2 C -0.026 4.026
3 N -0.251 5.251
4 C -0.181 4.181
5 C -0.138 4.138
6 C 0.002 3.998
7 N -0.216 5.216
8 C -0.096 4.096
9 C -0.166 4.166
10 C -0.110 4.110
11 H 0.128 0.872
12 C 0.011 3.989
13 N -0.363 5.363
14 C 0.318 3.682
15 O -0.447 6.447
16 C -0.279 4.279
17 S 0.073 5.927
18 C -0.694 4.694
19 H 0.102 0.898
20 C -0.193 4.193
21 N -0.548 5.548
22 Si 0.821 3.179
23 H -0.186 1.186
24 H -0.205 1.205
25 H -0.186 1.186
26 C -0.097 4.097
27 O -0.096 6.096
28 H 0.131 0.869
29 H 0.121 0.879
30 H 0.120 0.880
31 H 0.213 0.787
32 H 0.125 0.875
33 H 0.153 0.847
34 H 0.057 0.943
35 H 0.117 0.883
36 H 0.072 0.928
37 H 0.113 0.887
38 H 0.079 0.921
39 H 0.060 0.940
40 H 0.254 0.746
41 H 0.128 0.872
42 H 0.130 0.870
43 H 0.080 0.920
44 H 0.123 0.877
45 H 0.063 0.937
Dipole moment (debyes) X Y Z Total
from point charges 4.538 -11.561 -28.676 31.250
hybrid contribution -0.314 -1.655 1.344 2.155
sum 4.224 -13.216 -27.332 30.652
Atomic orbital electron populations
1.20496 0.79017 1.06025 1.06120 1.27157 0.97893 0.78458 0.99085
1.70485 1.03245 1.31478 1.19928 1.23478 0.95191 0.93822 1.05638
1.24917 0.84577 0.96549 1.07717 1.21342 0.87924 0.98555 0.92019
1.65222 1.43920 1.11255 1.01222 1.22985 0.94169 0.98817 0.93623
1.22502 0.98965 0.98406 0.96707 1.22226 1.00576 0.94150 0.94027
0.87250 1.21253 1.00018 0.97030 0.80593 1.45676 1.65354 1.17966
1.07303 1.20131 0.76299 0.85154 0.86639 1.90700 1.48953 1.20755
1.84260 1.23361 1.06294 1.03769 0.94485 1.85620 1.82995 1.21124
1.03008 1.23171 1.49633 1.02598 0.93987 0.89794 1.26157 0.93752
0.96007 1.03350 1.70186 1.40580 1.13737 1.30345 0.84988 0.79278
0.77947 0.75688 1.18575 1.20451 1.18597 1.23439 1.02702 0.92334
0.91215 1.84447 1.17227 1.38055 1.69834 0.86893 0.87918 0.87992
0.78663 0.87533 0.84686 0.94328 0.88327 0.92801 0.88743 0.92076
0.93963 0.74576 0.87157 0.86984 0.91993 0.87747 0.93668
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.06 -0.67 10.51 71.24 0.75 0.08 16
2 C 0.18 3.57 8.34 88.34 0.74 4.31 16
3 N -0.52 -12.36 11.30 -303.82 -3.43 -15.80 16
4 C -0.04 -0.81 9.87 83.39 0.82 0.02 16
5 C -0.08 -1.36 4.93 24.79 0.12 -1.24 16
6 C 0.13 1.34 6.04 85.56 0.52 1.86 16
7 N -0.49 -6.07 5.54 -887.59 -4.91 -10.99 16
8 C 0.03 0.41 6.46 86.44 0.56 0.97 16
9 C -0.13 -1.80 6.19 31.47 0.19 -1.61 16
10 C -0.09 -1.36 3.12 -9.59 -0.03 -1.39 16
11 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16
12 C 0.14 3.11 5.02 86.38 0.43 3.55 16
13 N -0.71 -17.85 5.40 -463.04 -2.50 -20.35 16
14 C 0.53 19.89 7.85 87.66 0.69 20.58 16
15 O -0.57 -27.11 15.86 -3.05 -0.05 -27.16 16
16 C -0.13 -5.07 6.16 71.24 0.44 -4.63 16
17 S -0.15 -8.67 20.57 -56.49 -1.16 -9.83 16
18 C -0.55 -31.25 9.50 67.95 0.65 -30.60 16
19 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16
20 C 0.01 0.69 5.49 84.86 0.47 1.15 16
21 N -0.91 -56.43 13.22 21.65 0.29 -56.14 16
22 Si 1.00 43.56 29.55 68.60 2.03 45.59 16
23 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16
24 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16
25 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16
26 C 0.03 0.44 5.64 86.65 0.49 0.93 16
27 O -0.21 -4.02 9.85 -3.68 -0.04 -4.05 16
28 H 0.11 0.79 8.14 -2.38 -0.02 0.78 16
29 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16
30 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16
31 H 0.20 2.85 8.06 -2.91 -0.02 2.83 16
32 H 0.11 0.88 8.08 -2.39 -0.02 0.86 16
33 H 0.14 0.82 8.14 -2.38 -0.02 0.80 16
34 H 0.04 0.61 6.30 -2.39 -0.02 0.60 16
35 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16
36 H 0.05 0.97 7.80 -2.38 -0.02 0.95 16
37 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16
38 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16
39 H 0.04 1.18 8.07 -2.39 -0.02 1.16 16
40 H 0.42 7.43 8.33 -92.71 -0.77 6.66 16
41 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16
42 H 0.11 3.95 8.14 -2.39 -0.02 3.93 16
43 H 0.27 15.59 8.31 -92.70 -0.77 14.82 16
44 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16
45 H 0.05 0.83 4.85 -2.39 -0.01 0.82 16
Total: -1.00 -82.83 384.90 -2.71 -85.54
By element:
Atomic # 1 Polarization: 18.97 SS G_CDS: 0.23 Total: 19.20 kcal
Atomic # 6 Polarization: -12.85 SS G_CDS: 6.83 Total: -6.02 kcal
Atomic # 7 Polarization: -92.71 SS G_CDS: -10.56 Total: -103.27 kcal
Atomic # 8 Polarization: -31.13 SS G_CDS: -0.08 Total: -31.21 kcal
Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal
Atomic # 16 Polarization: -8.67 SS G_CDS: -1.16 Total: -9.83 kcal
Total: -82.83 -2.71 -85.54 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001753118636.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 45.368 kcal
(2) G-P(sol) polarization free energy of solvation -82.827 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.459 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.713 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.540 kcal
(6) G-S(sol) free energy of system = (1) + (5) -40.173 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds