Wall clock time and date at job start Tue Mar 31 2020 22:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.46750 * 2 1 4 4 C 1.50702 * 109.47080 * 179.97438 * 3 2 1 5 5 C 1.36516 * 119.93358 * 95.02079 * 4 3 2 6 6 C 1.40590 * 118.92004 * 179.97438 * 5 4 3 7 7 O 1.22010 * 120.63349 * 180.02562 * 6 5 4 8 8 N 1.35023 * 118.73282 * 359.74366 * 6 5 4 9 9 H 0.97004 * 120.12041 * 180.27201 * 8 6 5 10 10 C 1.36182 * 119.75635 * 0.50091 * 8 6 5 11 11 S 1.76207 * 119.44045 * 179.76400 * 10 8 6 12 12 C 1.80998 * 99.99739 * 179.73167 * 11 10 8 13 13 H 1.09006 * 109.47150 * 305.00074 * 12 11 10 14 14 C 1.53003 * 109.47627 * 65.00050 * 12 11 10 15 15 C 1.50706 * 109.47296 * 185.00329 * 12 11 10 16 16 O 1.21281 * 119.99660 * 339.99655 * 15 12 11 17 17 N 1.34771 * 120.00094 * 159.99940 * 15 12 11 18 18 C 1.46501 * 120.00308 * 359.97438 * 17 15 12 19 19 C 1.46506 * 119.99594 * 179.97438 * 17 15 12 20 20 C 1.50699 * 109.46928 * 90.00049 * 19 17 15 21 21 H 1.08003 * 119.99963 * 0.02562 * 20 19 17 22 22 C 1.37873 * 119.99865 * 179.97438 * 20 19 17 23 23 N 1.31514 * 120.00518 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99987 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47000 * 60.00482 * 24 22 20 26 26 H 1.48506 * 109.47330 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47185 * 300.00291 * 24 22 20 28 28 N 1.31909 * 121.11602 * 359.49166 * 10 8 6 29 29 H 1.09005 * 109.46740 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47222 * 299.99712 * 1 2 3 31 31 H 1.08993 * 109.47315 * 60.00331 * 1 2 3 32 32 H 1.08995 * 109.47523 * 240.00030 * 2 1 3 33 33 H 1.09006 * 109.47091 * 119.99829 * 2 1 3 34 34 H 1.09004 * 109.47526 * 60.00109 * 3 2 1 35 35 H 1.08997 * 109.47412 * 299.99895 * 3 2 1 36 36 H 1.07995 * 120.54343 * 0.02562 * 5 4 3 37 37 H 1.09006 * 109.46836 * 59.99832 * 14 12 11 38 38 H 1.08997 * 109.47089 * 180.02562 * 14 12 11 39 39 H 1.09002 * 109.46835 * 300.00032 * 14 12 11 40 40 H 1.08999 * 109.46532 * 269.99942 * 18 17 15 41 41 H 1.09000 * 109.46877 * 29.99967 * 18 17 15 42 42 H 1.09000 * 109.47251 * 150.00072 * 18 17 15 43 43 H 1.09004 * 109.47073 * 209.99877 * 19 17 15 44 44 H 1.09000 * 109.47212 * 329.99960 * 19 17 15 45 45 H 0.96992 * 120.00316 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4426 0.0006 5 6 4.2286 1.5460 -1.1776 6 6 5.6343 1.5444 -1.1522 7 8 6.2749 1.6357 -2.1866 8 7 6.2618 1.4458 0.0393 9 1 7.2310 1.4468 0.0805 10 6 5.5292 1.3403 1.1824 11 16 6.3568 1.2058 2.7322 12 6 4.9307 1.1084 3.8425 13 1 4.2810 1.9676 3.6757 14 6 4.1541 -0.1801 3.5635 15 6 5.4064 1.1085 5.2725 16 8 6.5523 0.8062 5.5303 17 7 4.5585 1.4444 6.2647 18 6 3.1745 1.8100 5.9533 19 6 5.0209 1.4439 7.6549 20 6 5.5679 2.8044 8.0028 21 1 5.5704 3.5908 7.2625 22 6 6.0641 3.0454 9.2663 23 7 6.0607 2.0879 10.1679 24 14 6.7428 4.7316 9.6973 25 1 5.6767 5.7517 9.5301 26 1 7.2114 4.7312 11.1065 27 1 7.8802 5.0521 8.7980 28 7 4.2105 1.3425 1.1495 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 3.6968 1.6285 -2.1139 37 1 4.8038 -1.0393 3.7303 38 1 3.2950 -0.2384 4.2319 39 1 3.8099 -0.1801 2.5292 40 1 3.1123 2.8848 5.7829 41 1 2.8519 1.2807 5.0567 42 1 2.5297 1.5366 6.7884 43 1 4.1864 1.2081 8.3153 44 1 5.8038 0.6954 7.7771 45 1 6.4101 2.2574 11.0567 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007062951.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:20 Heat of formation + Delta-G solvation = -38.977147 kcal Electronic energy + Delta-G solvation = -27125.500310 eV Core-core repulsion = 23269.653220 eV Total energy + Delta-G solvation = -3855.847091 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.71697 -39.35328 -38.03289 -36.13127 -35.07103 -33.91840 -33.36575 -32.39089 -31.16437 -27.99404 -27.87831 -26.17404 -25.19862 -24.56703 -23.35573 -22.58257 -21.52913 -19.68228 -18.68258 -18.45195 -17.72063 -16.88245 -16.56064 -16.17504 -15.99202 -15.38625 -15.20107 -14.82351 -14.70962 -14.46712 -14.10939 -13.96269 -13.86064 -13.43021 -13.30580 -13.07248 -12.57928 -12.46498 -12.24671 -12.13449 -12.07072 -11.88859 -11.76764 -11.74901 -11.28962 -11.06246 -10.98054 -10.84055 -10.69468 -10.60672 -10.37214 -10.28068 -10.23803 -9.75901 -9.24079 -9.20179 -8.50909 -8.04762 -7.84098 -6.12512 -4.17887 0.19527 0.60307 1.50989 1.60731 2.62591 3.09890 3.27141 3.27501 3.32295 3.35273 3.67678 3.79875 4.28179 4.37551 4.63295 4.69733 4.70794 4.76029 4.83168 5.04540 5.06386 5.13810 5.22448 5.31793 5.39523 5.39985 5.46565 5.56441 5.62865 5.70540 5.76514 5.82334 5.84636 5.93720 6.02407 6.09657 6.18726 6.21655 6.85103 7.27774 7.31370 7.35271 7.60850 7.82210 8.11558 8.14614 8.67285 8.87698 9.47468 10.95665 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014513 B = 0.002873 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.830999 B = 9743.891744 C =10808.481478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C -0.074 4.074 4 C 0.201 3.799 5 C -0.308 4.308 6 C 0.531 3.469 7 O -0.545 6.545 8 N -0.617 5.617 9 H 0.420 0.580 10 C 0.359 3.641 11 S 0.081 5.919 12 C -0.103 4.103 13 H 0.127 0.873 14 C -0.146 4.146 15 C 0.523 3.477 16 O -0.528 6.528 17 N -0.588 5.588 18 C 0.075 3.925 19 C 0.246 3.754 20 C -0.531 4.531 21 H 0.058 0.942 22 C 0.063 3.937 23 N -0.894 5.894 24 Si 0.899 3.101 25 H -0.276 1.276 26 H -0.286 1.286 27 H -0.275 1.275 28 N -0.541 5.541 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.153 0.847 37 H 0.067 0.933 38 H 0.076 0.924 39 H 0.089 0.911 40 H 0.053 0.947 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.036 0.964 44 H 0.046 0.954 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.884 -3.831 -18.847 22.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.112 4.112 4 C 0.076 3.924 5 C -0.336 4.336 6 C 0.330 3.670 7 O -0.424 6.424 8 N -0.259 5.259 9 H 0.260 0.740 10 C -0.012 4.012 11 S 0.317 5.683 12 C -0.236 4.236 13 H 0.145 0.855 14 C -0.205 4.205 15 C 0.306 3.694 16 O -0.405 6.405 17 N -0.320 5.320 18 C -0.069 4.069 19 C 0.128 3.872 20 C -0.569 4.569 21 H 0.076 0.924 22 C -0.139 4.139 23 N -0.533 5.533 24 Si 0.726 3.274 25 H -0.202 1.202 26 H -0.211 1.211 27 H -0.201 1.201 28 N -0.271 5.271 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.108 0.892 35 H 0.104 0.896 36 H 0.170 0.830 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.108 0.892 40 H 0.072 0.928 41 H 0.081 0.919 42 H 0.091 0.909 43 H 0.054 0.946 44 H 0.064 0.936 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.344 -4.041 -18.225 20.875 hybrid contribution -0.174 1.205 -0.630 1.371 sum -9.517 -2.835 -18.855 21.310 Atomic orbital electron populations 1.21764 0.95047 1.01999 1.02072 1.21460 0.96200 0.95008 1.02808 1.20692 0.87449 0.98773 1.04275 1.21182 0.97022 0.86446 0.87709 1.22493 0.92581 1.17756 1.00765 1.17131 0.89696 0.78118 0.82092 1.90992 1.68455 1.52541 1.30433 1.44731 1.12686 1.61653 1.06839 0.74028 1.25996 0.91577 0.89985 0.93616 1.86798 1.07081 1.86329 0.88119 1.23761 0.98511 1.05880 0.95444 0.85496 1.22114 1.00197 0.93698 1.04468 1.19346 0.86136 0.79059 0.84880 1.90733 1.17749 1.48780 1.83259 1.48048 1.10270 1.64603 1.09050 1.21842 0.83377 1.00377 1.01273 1.19400 0.95995 0.98240 0.73608 1.21357 1.41312 0.96935 0.97344 0.92425 1.24922 0.95533 0.97352 0.96142 1.69909 1.46124 1.32407 1.04811 0.86550 0.79513 0.83896 0.77440 1.20187 1.21112 1.20092 1.68810 1.02880 1.26755 1.28622 0.92454 0.92311 0.92641 0.91796 0.91178 0.89189 0.89643 0.82979 0.91363 0.90511 0.89219 0.92805 0.91865 0.90886 0.94589 0.93621 0.92534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.91 37.16 0.37 -0.42 16 2 C -0.12 -0.74 5.92 -26.73 -0.16 -0.89 16 3 C -0.07 -0.50 5.54 -27.88 -0.15 -0.66 16 4 C 0.20 1.92 6.02 -82.68 -0.50 1.43 16 5 C -0.31 -3.30 9.65 -39.32 -0.38 -3.68 16 6 C 0.53 6.85 7.74 -15.26 -0.12 6.73 16 7 O -0.54 -8.81 17.97 4.91 0.09 -8.73 16 8 N -0.62 -6.74 5.32 -14.79 -0.08 -6.82 16 9 H 0.42 3.86 8.82 -40.82 -0.36 3.50 16 10 C 0.36 3.98 7.76 -88.14 -0.68 3.30 16 11 S 0.08 1.02 20.89 -107.50 -2.25 -1.23 16 12 C -0.10 -1.37 1.71 -27.88 -0.05 -1.42 16 13 H 0.13 1.54 7.03 -51.91 -0.36 1.17 16 14 C -0.15 -1.59 8.68 37.16 0.32 -1.26 16 15 C 0.52 9.80 6.85 -10.99 -0.08 9.73 16 16 O -0.53 -12.16 15.62 5.56 0.09 -12.07 16 17 N -0.59 -11.37 2.86 -182.95 -0.52 -11.90 16 18 C 0.08 1.05 9.93 59.85 0.59 1.65 16 19 C 0.25 6.07 5.20 -5.19 -0.03 6.04 16 20 C -0.53 -14.44 9.39 -34.44 -0.32 -14.76 16 21 H 0.06 1.56 7.81 -52.48 -0.41 1.15 16 22 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 23 N -0.89 -25.75 13.29 55.43 0.74 -25.01 16 24 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 27 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 28 N -0.54 -5.69 6.78 -9.32 -0.06 -5.75 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.09 0.47 8.04 -51.93 -0.42 0.05 16 36 H 0.15 1.42 8.06 -52.49 -0.42 0.99 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.08 0.76 6.33 -51.93 -0.33 0.43 16 39 H 0.09 0.88 5.65 -51.93 -0.29 0.59 16 40 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.06 0.67 4.76 -51.93 -0.25 0.42 16 42 H 0.07 0.98 7.89 -51.93 -0.41 0.57 16 43 H 0.04 0.89 7.89 -51.93 -0.41 0.48 16 44 H 0.05 1.27 7.42 -51.93 -0.39 0.89 16 45 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 386.49 15.07 5.82 5.82 Total: -1.00 -33.73 386.49 -9.04 -42.77 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -6.57 Total: -0.73 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: -1.28 Total: 7.41 kcal Atomic # 7 Polarization: -49.55 SS G_CDS: 0.07 Total: -49.48 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: 0.18 Total: -20.80 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: 1.02 SS G_CDS: -2.25 Total: -1.23 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.73 -9.04 -42.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007062951.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.794 kcal (2) G-P(sol) polarization free energy of solvation -33.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds