Wall clock time and date at job start Tue Mar 31 2020 22:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.46750 * 2 1 4 4 C 1.50702 * 109.47080 * 179.97438 * 3 2 1 5 5 C 1.36516 * 119.93358 * 95.02079 * 4 3 2 6 6 C 1.40590 * 118.92004 * 179.97438 * 5 4 3 7 7 O 1.22010 * 120.63349 * 180.02562 * 6 5 4 8 8 N 1.35023 * 118.73282 * 359.74366 * 6 5 4 9 9 H 0.97004 * 120.12041 * 180.27201 * 8 6 5 10 10 C 1.36182 * 119.75635 * 0.50091 * 8 6 5 11 11 S 1.76207 * 119.44045 * 179.76400 * 10 8 6 12 12 C 1.80998 * 99.99739 * 179.73167 * 11 10 8 13 13 H 1.09006 * 109.47150 * 305.00074 * 12 11 10 14 14 C 1.53003 * 109.47627 * 65.00050 * 12 11 10 15 15 C 1.50706 * 109.47296 * 185.00329 * 12 11 10 16 16 O 1.21281 * 119.99660 * 339.99655 * 15 12 11 17 17 N 1.34771 * 120.00094 * 159.99940 * 15 12 11 18 18 C 1.46501 * 120.00308 * 359.97438 * 17 15 12 19 19 C 1.46506 * 119.99594 * 179.97438 * 17 15 12 20 20 C 1.50699 * 109.46928 * 90.00049 * 19 17 15 21 21 H 1.08003 * 119.99963 * 0.02562 * 20 19 17 22 22 C 1.37873 * 119.99865 * 179.97438 * 20 19 17 23 23 N 1.31514 * 120.00518 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99987 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47000 * 60.00482 * 24 22 20 26 26 H 1.48506 * 109.47330 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47185 * 300.00291 * 24 22 20 28 28 N 1.31909 * 121.11602 * 359.49166 * 10 8 6 29 29 H 1.09005 * 109.46740 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47222 * 299.99712 * 1 2 3 31 31 H 1.08993 * 109.47315 * 60.00331 * 1 2 3 32 32 H 1.08995 * 109.47523 * 240.00030 * 2 1 3 33 33 H 1.09006 * 109.47091 * 119.99829 * 2 1 3 34 34 H 1.09004 * 109.47526 * 60.00109 * 3 2 1 35 35 H 1.08997 * 109.47412 * 299.99895 * 3 2 1 36 36 H 1.07995 * 120.54343 * 0.02562 * 5 4 3 37 37 H 1.09006 * 109.46836 * 59.99832 * 14 12 11 38 38 H 1.08997 * 109.47089 * 180.02562 * 14 12 11 39 39 H 1.09002 * 109.46835 * 300.00032 * 14 12 11 40 40 H 1.08999 * 109.46532 * 269.99942 * 18 17 15 41 41 H 1.09000 * 109.46877 * 29.99967 * 18 17 15 42 42 H 1.09000 * 109.47251 * 150.00072 * 18 17 15 43 43 H 1.09004 * 109.47073 * 209.99877 * 19 17 15 44 44 H 1.09000 * 109.47212 * 329.99960 * 19 17 15 45 45 H 0.96992 * 120.00316 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4426 0.0006 5 6 4.2286 1.5460 -1.1776 6 6 5.6343 1.5444 -1.1522 7 8 6.2749 1.6357 -2.1866 8 7 6.2618 1.4458 0.0393 9 1 7.2310 1.4468 0.0805 10 6 5.5292 1.3403 1.1824 11 16 6.3568 1.2058 2.7322 12 6 4.9307 1.1084 3.8425 13 1 4.2810 1.9676 3.6757 14 6 4.1541 -0.1801 3.5635 15 6 5.4064 1.1085 5.2725 16 8 6.5523 0.8062 5.5303 17 7 4.5585 1.4444 6.2647 18 6 3.1745 1.8100 5.9533 19 6 5.0209 1.4439 7.6549 20 6 5.5679 2.8044 8.0028 21 1 5.5704 3.5908 7.2625 22 6 6.0641 3.0454 9.2663 23 7 6.0607 2.0879 10.1679 24 14 6.7428 4.7316 9.6973 25 1 5.6767 5.7517 9.5301 26 1 7.2114 4.7312 11.1065 27 1 7.8802 5.0521 8.7980 28 7 4.2105 1.3425 1.1495 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 3.6968 1.6285 -2.1139 37 1 4.8038 -1.0393 3.7303 38 1 3.2950 -0.2384 4.2319 39 1 3.8099 -0.1801 2.5292 40 1 3.1123 2.8848 5.7829 41 1 2.8519 1.2807 5.0567 42 1 2.5297 1.5366 6.7884 43 1 4.1864 1.2081 8.3153 44 1 5.8038 0.6954 7.7771 45 1 6.4101 2.2574 11.0567 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000007062951.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:19 Heat of formation + Delta-G solvation = -60.153991 kcal Electronic energy + Delta-G solvation = -27126.418607 eV Core-core repulsion = 23269.653220 eV Total energy + Delta-G solvation = -3856.765387 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.63031 -40.86070 -38.99664 -36.86825 -36.69292 -35.12846 -34.51421 -33.89425 -32.06518 -29.68720 -28.60300 -27.51187 -26.10005 -25.99570 -24.31482 -23.99579 -22.11666 -20.79080 -19.88110 -19.36838 -18.74717 -18.70619 -18.11804 -17.25714 -17.12694 -16.67660 -16.39428 -15.97207 -15.74456 -15.48612 -15.37231 -14.82495 -14.69315 -14.57621 -14.50960 -14.08905 -13.98802 -13.64388 -13.38902 -13.32866 -13.01147 -12.95342 -12.85226 -12.77856 -12.66475 -12.49154 -12.26775 -12.19069 -11.74010 -11.66859 -11.55562 -11.48754 -11.35255 -11.13680 -10.74425 -10.62992 -10.18112 -9.50253 -8.99187 -8.22379 -6.36501 -0.66880 -0.40917 0.58354 0.58674 1.38396 1.41927 1.48838 1.64525 1.74040 2.21990 2.38519 2.41949 3.02105 3.08186 3.42633 3.45410 3.79822 3.98854 4.01788 4.18842 4.22998 4.35995 4.40796 4.50634 4.66420 4.74926 4.78918 4.80333 4.87679 4.94643 4.99860 5.01578 5.05964 5.17254 5.21749 5.30359 5.32342 5.37506 5.41113 5.53283 5.54256 5.78878 6.04883 6.44522 6.58927 6.65323 6.72974 7.19290 7.36697 8.84569 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014513 B = 0.002873 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.830999 B = 9743.891744 C =10808.481478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C -0.071 4.071 4 C 0.209 3.791 5 C -0.314 4.314 6 C 0.522 3.478 7 O -0.587 6.587 8 N -0.609 5.609 9 H 0.426 0.574 10 C 0.364 3.636 11 S 0.063 5.937 12 C -0.089 4.089 13 H 0.147 0.853 14 C -0.139 4.139 15 C 0.516 3.484 16 O -0.581 6.581 17 N -0.595 5.595 18 C 0.069 3.931 19 C 0.260 3.740 20 C -0.545 4.545 21 H 0.055 0.945 22 C 0.011 3.989 23 N -0.927 5.927 24 Si 0.963 3.037 25 H -0.260 1.260 26 H -0.280 1.280 27 H -0.278 1.278 28 N -0.536 5.536 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.166 0.834 37 H 0.059 0.941 38 H 0.092 0.908 39 H 0.106 0.894 40 H 0.061 0.939 41 H 0.104 0.896 42 H 0.078 0.922 43 H 0.031 0.969 44 H 0.002 0.998 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.209 -2.840 -20.066 24.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.152 4.152 3 C -0.109 4.109 4 C 0.084 3.916 5 C -0.341 4.341 6 C 0.323 3.677 7 O -0.470 6.470 8 N -0.251 5.251 9 H 0.267 0.733 10 C -0.008 4.008 11 S 0.299 5.701 12 C -0.221 4.221 13 H 0.165 0.835 14 C -0.198 4.198 15 C 0.302 3.698 16 O -0.462 6.462 17 N -0.325 5.325 18 C -0.073 4.073 19 C 0.139 3.861 20 C -0.583 4.583 21 H 0.073 0.927 22 C -0.189 4.189 23 N -0.567 5.567 24 Si 0.787 3.213 25 H -0.185 1.185 26 H -0.205 1.205 27 H -0.204 1.204 28 N -0.265 5.265 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.117 0.883 35 H 0.121 0.879 36 H 0.184 0.816 37 H 0.078 0.922 38 H 0.111 0.889 39 H 0.124 0.876 40 H 0.080 0.920 41 H 0.122 0.878 42 H 0.096 0.904 43 H 0.049 0.951 44 H 0.020 0.980 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.721 -3.045 -19.449 22.911 hybrid contribution 0.511 0.851 -0.261 1.026 sum -11.210 -2.194 -19.711 22.781 Atomic orbital electron populations 1.21746 0.94119 1.02231 1.02575 1.21435 0.96925 0.94433 1.02406 1.20817 0.85052 0.99391 1.05619 1.21596 0.98392 0.84838 0.86771 1.22627 0.91566 1.17941 1.01978 1.17480 0.90514 0.77924 0.81806 1.90970 1.69343 1.54974 1.31739 1.44645 1.13199 1.60753 1.06455 0.73321 1.25714 0.91783 0.90461 0.92811 1.86981 1.07169 1.87037 0.88936 1.23602 0.98847 1.08080 0.91612 0.83512 1.22128 1.00090 0.91821 1.05749 1.20172 0.85293 0.77513 0.86855 1.90704 1.20117 1.50798 1.84541 1.48010 1.12583 1.64678 1.07266 1.22152 0.80322 1.01459 1.03324 1.18855 0.94472 0.95923 0.76865 1.21673 1.41387 0.97810 0.97446 0.92724 1.25791 0.95788 1.01123 0.96158 1.70023 1.47017 1.34407 1.05205 0.85541 0.78946 0.79648 0.77144 1.18472 1.20527 1.20364 1.68836 1.02425 1.26002 1.29200 0.92415 0.91978 0.91987 0.92091 0.91771 0.88300 0.87908 0.81640 0.92238 0.88912 0.87607 0.92026 0.87806 0.90356 0.95137 0.97973 0.92383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.91 71.98 0.71 -0.38 16 2 C -0.11 -1.07 5.92 30.59 0.18 -0.89 16 3 C -0.07 -0.70 5.54 29.85 0.17 -0.53 16 4 C 0.21 3.38 6.02 41.97 0.25 3.63 16 5 C -0.31 -6.09 9.65 22.44 0.22 -5.87 16 6 C 0.52 12.99 7.74 84.78 0.66 13.65 16 7 O -0.59 -18.99 17.97 -5.35 -0.10 -19.08 16 8 N -0.61 -12.74 5.32 -318.65 -1.69 -14.43 16 9 H 0.43 7.70 8.82 -92.71 -0.82 6.88 16 10 C 0.36 7.42 7.76 179.48 1.39 8.82 16 11 S 0.06 1.54 20.89 -56.49 -1.18 0.36 16 12 C -0.09 -2.21 1.71 29.85 0.05 -2.16 16 13 H 0.15 3.07 7.03 -2.39 -0.02 3.05 16 14 C -0.14 -2.66 8.68 71.98 0.62 -2.04 16 15 C 0.52 19.27 6.85 87.66 0.60 19.87 16 16 O -0.58 -27.62 15.62 -3.03 -0.05 -27.67 16 17 N -0.60 -22.81 2.86 -851.11 -2.43 -25.24 16 18 C 0.07 1.77 9.93 127.77 1.27 3.04 16 19 C 0.26 13.17 5.20 85.63 0.45 13.61 16 20 C -0.54 -30.04 9.39 25.60 0.24 -29.80 16 21 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 22 C 0.01 0.60 5.46 84.65 0.46 1.06 16 23 N -0.93 -54.41 13.29 21.45 0.28 -54.12 16 24 Si 0.96 43.59 29.54 68.60 2.03 45.61 16 25 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 26 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 27 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 28 N -0.54 -9.73 6.78 -183.39 -1.24 -10.97 16 29 H 0.06 0.43 8.14 -2.38 -0.02 0.41 16 30 H 0.06 0.42 8.14 -2.39 -0.02 0.41 16 31 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 34 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 35 H 0.10 0.71 8.04 -2.39 -0.02 0.70 16 36 H 0.17 2.71 8.06 -2.91 -0.02 2.69 16 37 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 38 H 0.09 1.49 6.33 -2.39 -0.02 1.47 16 39 H 0.11 1.71 5.65 -2.39 -0.01 1.70 16 40 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.10 1.78 4.76 -2.39 -0.01 1.77 16 42 H 0.08 1.93 7.89 -2.39 -0.02 1.91 16 43 H 0.03 1.56 7.89 -2.38 -0.02 1.54 16 44 H 0.00 0.13 7.42 -2.39 -0.02 0.11 16 45 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 Total: -1.00 -75.66 386.49 3.09 -72.57 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: 0.20 Total: 10.95 kcal Atomic # 6 Polarization: 14.75 SS G_CDS: 7.27 Total: 22.02 kcal Atomic # 7 Polarization: -99.68 SS G_CDS: -5.08 Total: -104.76 kcal Atomic # 8 Polarization: -46.61 SS G_CDS: -0.14 Total: -46.75 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Atomic # 16 Polarization: 1.54 SS G_CDS: -1.18 Total: 0.36 kcal Total: -75.66 3.09 -72.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007062951.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.416 kcal (2) G-P(sol) polarization free energy of solvation -75.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds