Wall clock time and date at job start Wed Apr 1 2020 01:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46824 * 2 1 4 4 N 1.46502 * 109.46912 * 179.97438 * 3 2 1 5 5 C 1.37095 * 120.00507 * 262.98271 * 4 3 2 6 6 H 1.07996 * 119.99872 * 142.20438 * 5 4 3 7 7 C 1.38946 * 119.99905 * 322.21555 * 5 4 3 8 8 N 1.31416 * 120.00057 * 157.13665 * 7 5 4 9 9 Si 1.86803 * 120.00122 * 337.12649 * 7 5 4 10 10 H 1.48502 * 109.46866 * 95.21226 * 9 7 5 11 11 H 1.48500 * 109.47247 * 215.21176 * 9 7 5 12 12 H 1.48497 * 109.47195 * 335.21126 * 9 7 5 13 13 C 1.34779 * 119.99355 * 82.98679 * 4 3 2 14 14 O 1.21291 * 119.99559 * 179.97438 * 13 4 3 15 15 C 1.50699 * 120.00220 * 0.02562 * 13 4 3 16 16 C 1.50702 * 109.46715 * 180.02562 * 15 13 4 17 17 C 1.33443 * 122.71603 * 124.95491 * 16 15 13 18 18 S 1.76168 * 108.06437 * 180.02562 * 17 16 15 19 19 C 1.70968 * 90.33889 * 359.97438 * 18 17 16 20 20 N 1.39001 * 124.94551 * 179.97438 * 19 18 17 21 21 C 1.34776 * 120.00185 * 0.02604 * 20 19 18 22 22 O 1.21289 * 119.99624 * 0.02562 * 21 20 19 23 23 C 1.50702 * 120.00434 * 179.97438 * 21 20 19 24 24 C 1.52999 * 109.47320 * 180.02562 * 23 21 20 25 25 C 1.52995 * 109.47183 * 300.00263 * 23 21 20 26 26 N 1.29626 * 110.11324 * 0.02562 * 19 18 17 27 27 H 1.08999 * 109.47193 * 59.99937 * 1 2 3 28 28 H 1.09005 * 109.46935 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47600 * 299.99862 * 1 2 3 30 30 H 1.08996 * 109.47234 * 239.99932 * 2 1 3 31 31 H 1.09001 * 109.46680 * 120.00000 * 2 1 3 32 32 H 1.09010 * 109.46924 * 60.00369 * 3 2 1 33 33 H 1.08996 * 109.47762 * 300.00194 * 3 2 1 34 34 H 0.96997 * 120.00054 * 179.97438 * 8 7 5 35 35 H 1.08994 * 109.47194 * 59.99680 * 15 13 4 36 36 H 1.08999 * 109.46730 * 299.99618 * 15 13 4 37 37 H 1.08006 * 125.96951 * 0.03237 * 17 16 15 38 38 H 0.97003 * 120.00287 * 180.02562 * 20 19 18 39 39 H 1.09003 * 109.46747 * 60.00399 * 23 21 20 40 40 H 1.09003 * 109.47285 * 59.99799 * 24 23 21 41 41 H 1.08995 * 109.47346 * 180.02562 * 24 23 21 42 42 H 1.09003 * 109.47125 * 300.00576 * 24 23 21 43 43 H 1.09003 * 109.47390 * 299.99742 * 25 23 21 44 44 H 1.09000 * 109.47414 * 59.99551 * 25 23 21 45 45 H 1.08995 * 109.47049 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1900 1.5878 1.1792 6 1 5.1000 1.0309 1.3470 7 6 3.7135 2.4512 2.1579 8 7 4.0662 2.2813 3.4124 9 14 2.5716 3.8538 1.6905 10 1 1.1617 3.4302 1.8855 11 1 2.8576 5.0318 2.5483 12 1 2.7877 4.2144 0.2663 13 6 4.1792 1.2998 -1.1576 14 8 5.3921 1.3003 -1.1572 15 6 3.4262 1.1409 -2.4533 16 6 4.4060 1.0001 -3.5896 17 6 4.3854 -0.0313 -4.4361 18 16 5.6882 0.1917 -5.6007 19 6 6.1353 1.6539 -4.8358 20 7 7.1848 2.4731 -5.2356 21 6 7.9366 2.1334 -6.3013 22 8 7.6972 1.1131 -6.9118 23 6 9.0740 3.0218 -6.7351 24 6 9.7591 2.4119 -7.9597 25 6 8.5316 4.4071 -7.0919 26 7 5.3539 1.8869 -3.8281 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 0.8901 33 1 1.6766 1.9564 -0.8899 34 1 3.7338 2.8844 4.0956 35 1 2.7999 2.0173 -2.6194 36 1 2.7992 0.2507 -2.4022 37 1 3.6911 -0.8583 -4.4116 38 1 7.3761 3.2893 -4.7475 39 1 9.7948 3.1120 -5.9224 40 1 9.0381 2.3219 -8.7722 41 1 10.5820 3.0542 -8.2731 42 1 10.1454 1.4247 -7.7059 43 1 7.8108 4.3169 -7.9046 44 1 8.0433 4.8419 -6.2198 45 1 9.3544 5.0498 -7.4052 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000056485472.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:34:22 Heat of formation + Delta-G solvation = -19.537452 kcal Electronic energy + Delta-G solvation = -27167.306967 eV Core-core repulsion = 23312.302845 eV Total energy + Delta-G solvation = -3855.004122 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.75443 -39.67748 -38.39854 -35.48431 -35.07812 -34.95035 -32.88197 -31.52958 -31.01986 -28.01862 -27.53036 -25.87961 -25.40103 -24.49553 -22.82293 -21.39252 -21.14539 -19.84521 -18.82452 -17.88963 -17.24694 -16.93316 -16.50995 -16.18351 -15.96539 -15.49078 -14.96586 -14.69191 -14.33200 -14.19665 -13.92583 -13.76600 -13.27477 -13.17120 -13.06994 -12.78208 -12.75196 -12.60490 -12.42662 -12.33776 -11.79831 -11.74058 -11.60704 -11.53450 -11.36490 -11.24075 -10.99502 -10.79321 -10.76168 -10.48964 -10.05308 -9.96866 -9.79770 -9.40844 -9.00350 -8.91559 -8.46695 -8.03153 -7.66314 -6.34274 -3.89331 0.92366 1.33701 2.04909 2.13345 2.53772 3.06439 3.20884 3.25210 3.31758 3.83413 4.13375 4.20134 4.43641 4.48843 4.50981 4.69520 4.92034 5.00801 5.19151 5.28378 5.34148 5.39385 5.42519 5.46474 5.52040 5.56171 5.62302 5.70694 5.72882 5.81757 5.84364 5.88576 5.95287 6.01027 6.14099 6.24129 6.31595 6.39343 6.57904 6.78920 6.80760 7.59094 7.61978 8.09094 8.35557 8.59904 9.05435 9.39299 9.87659 10.78253 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016049 B = 0.002923 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.260379 B = 9577.147113 C =10650.537207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.138 4.138 3 C 0.091 3.909 4 N -0.471 5.471 5 C -0.310 4.310 6 H 0.103 0.897 7 C 0.060 3.940 8 N -0.866 5.866 9 Si 0.870 3.130 10 H -0.275 1.275 11 H -0.288 1.288 12 H -0.263 1.263 13 C 0.475 3.525 14 O -0.546 6.546 15 C -0.070 4.070 16 C 0.128 3.872 17 C -0.316 4.316 18 S 0.212 5.788 19 C 0.238 3.762 20 N -0.621 5.621 21 C 0.514 3.486 22 O -0.506 6.506 23 C -0.106 4.106 24 C -0.134 4.134 25 C -0.149 4.149 26 N -0.472 5.472 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.058 0.942 34 H 0.272 0.728 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.174 0.826 38 H 0.423 0.577 39 H 0.107 0.893 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.417 0.920 -20.781 20.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.177 4.177 3 C -0.033 4.033 4 N -0.194 5.194 5 C -0.437 4.437 6 H 0.120 0.880 7 C -0.145 4.145 8 N -0.503 5.503 9 Si 0.698 3.302 10 H -0.202 1.202 11 H -0.215 1.215 12 H -0.188 1.188 13 C 0.262 3.738 14 O -0.425 6.425 15 C -0.113 4.113 16 C -0.005 4.005 17 C -0.456 4.456 18 S 0.461 5.539 19 C -0.130 4.130 20 N -0.270 5.270 21 C 0.301 3.699 22 O -0.380 6.380 23 C -0.127 4.127 24 C -0.192 4.192 25 C -0.207 4.207 26 N -0.194 5.194 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.115 0.885 36 H 0.117 0.883 37 H 0.191 0.809 38 H 0.262 0.738 39 H 0.125 0.875 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.440 0.227 -21.601 21.740 hybrid contribution -1.254 1.424 1.228 2.260 sum 1.186 1.650 -20.374 20.475 Atomic orbital electron populations 1.21734 0.96128 1.01280 1.01581 1.21934 0.94985 0.97938 1.02833 1.21877 0.83278 0.96548 1.01554 1.43732 1.03548 1.65874 1.06243 1.18982 1.10375 1.24760 0.89556 0.87986 1.25338 0.97267 0.97136 0.94746 1.69774 1.44359 1.36456 0.99714 0.87050 0.80204 0.83207 0.79767 1.20228 1.21451 1.18760 1.19921 0.88161 0.81929 0.83817 1.90579 1.13655 1.52292 1.85990 1.20426 0.96002 1.03896 0.91005 1.19240 0.94578 0.90058 0.96617 1.27121 1.08306 1.05963 1.04202 1.84517 1.23947 1.16843 1.28571 1.23375 0.95670 0.97040 0.96915 1.42851 1.28192 1.25341 1.30621 1.21187 0.83290 0.86819 0.78619 1.90648 1.68735 1.25536 1.53125 1.21284 0.94974 0.95319 1.01144 1.21651 1.00298 1.01160 0.96050 1.21856 1.02110 0.94105 1.02587 1.66043 1.05993 1.32492 1.14823 0.93037 0.92872 0.92729 0.92268 0.90698 0.90639 0.92371 0.91749 0.88539 0.88315 0.80862 0.73780 0.87507 0.91645 0.91507 0.91606 0.91720 0.91772 0.90715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.91 37.16 0.37 -1.60 16 2 C -0.14 -2.30 6.13 -26.73 -0.16 -2.47 16 3 C 0.09 1.82 3.74 -4.04 -0.02 1.80 16 4 N -0.47 -11.53 2.18 -114.81 -0.25 -11.78 16 5 C -0.31 -8.90 9.35 -14.94 -0.14 -9.04 16 6 H 0.10 3.31 7.92 -52.49 -0.42 2.90 16 7 C 0.06 1.69 5.24 -17.47 -0.09 1.60 16 8 N -0.87 -25.37 13.96 55.50 0.77 -24.60 16 9 Si 0.87 20.84 25.12 -169.99 -4.27 16.57 16 10 H -0.28 -6.08 6.67 56.52 0.38 -5.70 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.26 -6.32 7.11 56.52 0.40 -5.91 16 13 C 0.47 11.36 7.54 -10.98 -0.08 11.28 16 14 O -0.55 -15.34 15.32 5.55 0.08 -15.26 16 15 C -0.07 -1.27 4.81 -29.03 -0.14 -1.41 16 16 C 0.13 2.34 5.63 -84.20 -0.47 1.86 16 17 C -0.32 -4.83 11.05 29.06 0.32 -4.51 16 18 S 0.21 3.13 20.22 -107.50 -2.17 0.96 16 19 C 0.24 3.90 8.19 -87.35 -0.72 3.19 16 20 N -0.62 -7.91 5.30 -13.07 -0.07 -7.98 16 21 C 0.51 5.82 7.12 -10.98 -0.08 5.74 16 22 O -0.51 -7.04 13.45 5.55 0.07 -6.96 16 23 C -0.11 -0.76 3.26 -91.77 -0.30 -1.06 16 24 C -0.13 -0.92 8.48 37.16 0.32 -0.60 16 25 C -0.15 -0.84 9.09 37.16 0.34 -0.51 16 26 N -0.47 -9.13 9.73 -11.28 -0.11 -9.24 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.90 6.39 -51.93 -0.33 0.57 16 31 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 32 H 0.08 1.62 3.72 -51.92 -0.19 1.43 16 33 H 0.06 1.00 6.74 -51.93 -0.35 0.65 16 34 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.10 1.59 7.42 -51.93 -0.39 1.20 16 36 H 0.10 1.47 6.23 -51.93 -0.32 1.15 16 37 H 0.17 2.10 8.06 -52.48 -0.42 1.67 16 38 H 0.42 4.55 8.24 -40.82 -0.34 4.21 16 39 H 0.11 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 41 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 43 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 44 H 0.06 0.35 7.56 -51.93 -0.39 -0.04 16 45 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 377.60 15.07 5.69 5.69 Total: -1.00 -36.27 377.60 -7.64 -43.91 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -6.53 Total: 4.41 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: -0.86 Total: 4.28 kcal Atomic # 7 Polarization: -53.94 SS G_CDS: 0.34 Total: -53.60 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: 0.16 Total: -22.22 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.27 Total: 16.57 kcal Atomic # 16 Polarization: 3.13 SS G_CDS: -2.17 Total: 0.96 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.27 -7.64 -43.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056485472.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.372 kcal (2) G-P(sol) polarization free energy of solvation -36.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds