Wall clock time and date at job start Wed Apr 1 2020 01:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46824 * 2 1 4 4 N 1.46502 * 109.46912 * 179.97438 * 3 2 1 5 5 C 1.37095 * 120.00507 * 262.98271 * 4 3 2 6 6 H 1.07996 * 119.99872 * 142.20438 * 5 4 3 7 7 C 1.38946 * 119.99905 * 322.21555 * 5 4 3 8 8 N 1.31416 * 120.00057 * 157.13665 * 7 5 4 9 9 Si 1.86803 * 120.00122 * 337.12649 * 7 5 4 10 10 H 1.48502 * 109.46866 * 95.21226 * 9 7 5 11 11 H 1.48500 * 109.47247 * 215.21176 * 9 7 5 12 12 H 1.48497 * 109.47195 * 335.21126 * 9 7 5 13 13 C 1.34779 * 119.99355 * 82.98679 * 4 3 2 14 14 O 1.21291 * 119.99559 * 179.97438 * 13 4 3 15 15 C 1.50699 * 120.00220 * 0.02562 * 13 4 3 16 16 C 1.50702 * 109.46715 * 180.02562 * 15 13 4 17 17 C 1.33443 * 122.71603 * 124.95491 * 16 15 13 18 18 S 1.76168 * 108.06437 * 180.02562 * 17 16 15 19 19 C 1.70968 * 90.33889 * 359.97438 * 18 17 16 20 20 N 1.39001 * 124.94551 * 179.97438 * 19 18 17 21 21 C 1.34776 * 120.00185 * 0.02604 * 20 19 18 22 22 O 1.21289 * 119.99624 * 0.02562 * 21 20 19 23 23 C 1.50702 * 120.00434 * 179.97438 * 21 20 19 24 24 C 1.52999 * 109.47320 * 180.02562 * 23 21 20 25 25 C 1.52995 * 109.47183 * 300.00263 * 23 21 20 26 26 N 1.29626 * 110.11324 * 0.02562 * 19 18 17 27 27 H 1.08999 * 109.47193 * 59.99937 * 1 2 3 28 28 H 1.09005 * 109.46935 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47600 * 299.99862 * 1 2 3 30 30 H 1.08996 * 109.47234 * 239.99932 * 2 1 3 31 31 H 1.09001 * 109.46680 * 120.00000 * 2 1 3 32 32 H 1.09010 * 109.46924 * 60.00369 * 3 2 1 33 33 H 1.08996 * 109.47762 * 300.00194 * 3 2 1 34 34 H 0.96997 * 120.00054 * 179.97438 * 8 7 5 35 35 H 1.08994 * 109.47194 * 59.99680 * 15 13 4 36 36 H 1.08999 * 109.46730 * 299.99618 * 15 13 4 37 37 H 1.08006 * 125.96951 * 0.03237 * 17 16 15 38 38 H 0.97003 * 120.00287 * 180.02562 * 20 19 18 39 39 H 1.09003 * 109.46747 * 60.00399 * 23 21 20 40 40 H 1.09003 * 109.47285 * 59.99799 * 24 23 21 41 41 H 1.08995 * 109.47346 * 180.02562 * 24 23 21 42 42 H 1.09003 * 109.47125 * 300.00576 * 24 23 21 43 43 H 1.09003 * 109.47390 * 299.99742 * 25 23 21 44 44 H 1.09000 * 109.47414 * 59.99551 * 25 23 21 45 45 H 1.08995 * 109.47049 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1900 1.5878 1.1792 6 1 5.1000 1.0309 1.3470 7 6 3.7135 2.4512 2.1579 8 7 4.0662 2.2813 3.4124 9 14 2.5716 3.8538 1.6905 10 1 1.1617 3.4302 1.8855 11 1 2.8576 5.0318 2.5483 12 1 2.7877 4.2144 0.2663 13 6 4.1792 1.2998 -1.1576 14 8 5.3921 1.3003 -1.1572 15 6 3.4262 1.1409 -2.4533 16 6 4.4060 1.0001 -3.5896 17 6 4.3854 -0.0313 -4.4361 18 16 5.6882 0.1917 -5.6007 19 6 6.1353 1.6539 -4.8358 20 7 7.1848 2.4731 -5.2356 21 6 7.9366 2.1334 -6.3013 22 8 7.6972 1.1131 -6.9118 23 6 9.0740 3.0218 -6.7351 24 6 9.7591 2.4119 -7.9597 25 6 8.5316 4.4071 -7.0919 26 7 5.3539 1.8869 -3.8281 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 0.8901 33 1 1.6766 1.9564 -0.8899 34 1 3.7338 2.8844 4.0956 35 1 2.7999 2.0173 -2.6194 36 1 2.7992 0.2507 -2.4022 37 1 3.6911 -0.8583 -4.4116 38 1 7.3761 3.2893 -4.7475 39 1 9.7948 3.1120 -5.9224 40 1 9.0381 2.3219 -8.7722 41 1 10.5820 3.0542 -8.2731 42 1 10.1454 1.4247 -7.7059 43 1 7.8108 4.3169 -7.9046 44 1 8.0433 4.8419 -6.2198 45 1 9.3544 5.0498 -7.4052 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000056485472.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:34:21 Heat of formation + Delta-G solvation = -45.016629 kcal Electronic energy + Delta-G solvation = -27168.411827 eV Core-core repulsion = 23312.302845 eV Total energy + Delta-G solvation = -3856.108982 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.75998 -41.06828 -39.99386 -37.19872 -36.19545 -35.62235 -34.71240 -33.25251 -32.42572 -29.41526 -28.04949 -27.40127 -26.60561 -26.09546 -23.88877 -22.73020 -22.16428 -21.28248 -20.12214 -19.10265 -18.89760 -18.15146 -18.00264 -17.61358 -17.33411 -16.91906 -15.96150 -15.95192 -15.88649 -15.46538 -15.33389 -14.85446 -14.71700 -14.48741 -14.38707 -14.06960 -13.97213 -13.78196 -13.36038 -13.29698 -13.27249 -12.99857 -12.93964 -12.49691 -12.37794 -12.32896 -12.13300 -12.08698 -12.04274 -11.92276 -11.85796 -11.39311 -11.01276 -11.00433 -10.66627 -10.33778 -10.13179 -9.65641 -9.24497 -8.50801 -6.10628 -0.24530 0.18292 0.87183 1.16162 1.17703 1.30785 1.43299 1.56855 1.95663 2.01419 2.17997 2.77609 2.98580 3.33489 3.52667 3.90543 3.94537 3.95858 4.10399 4.11416 4.21975 4.34755 4.38716 4.51357 4.53983 4.64333 4.70277 4.71556 4.75251 4.80959 4.82829 4.91762 5.03792 5.03972 5.17199 5.23359 5.26704 5.34037 5.34530 5.50108 5.59497 5.85231 6.05320 6.60805 6.66675 6.89007 6.99051 7.34365 7.94497 8.67133 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016049 B = 0.002923 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.260379 B = 9577.147113 C =10650.537207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.133 4.133 3 C 0.083 3.917 4 N -0.481 5.481 5 C -0.327 4.327 6 H 0.038 0.962 7 C 0.013 3.987 8 N -0.913 5.913 9 Si 0.943 3.057 10 H -0.237 1.237 11 H -0.289 1.289 12 H -0.261 1.261 13 C 0.466 3.534 14 O -0.601 6.601 15 C -0.056 4.056 16 C 0.091 3.909 17 C -0.303 4.303 18 S 0.238 5.762 19 C 0.220 3.780 20 N -0.619 5.619 21 C 0.511 3.489 22 O -0.534 6.534 23 C -0.099 4.099 24 C -0.132 4.132 25 C -0.146 4.146 26 N -0.515 5.515 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.048 0.952 30 H 0.076 0.924 31 H 0.041 0.959 32 H 0.061 0.939 33 H 0.097 0.903 34 H 0.279 0.721 35 H 0.118 0.882 36 H 0.136 0.864 37 H 0.208 0.792 38 H 0.430 0.570 39 H 0.126 0.874 40 H 0.055 0.945 41 H 0.092 0.908 42 H 0.052 0.948 43 H 0.058 0.942 44 H 0.064 0.936 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.915 1.764 -23.380 23.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.172 4.172 3 C -0.039 4.039 4 N -0.204 5.204 5 C -0.455 4.455 6 H 0.056 0.944 7 C -0.189 4.189 8 N -0.551 5.551 9 Si 0.766 3.234 10 H -0.161 1.161 11 H -0.216 1.216 12 H -0.185 1.185 13 C 0.255 3.745 14 O -0.484 6.484 15 C -0.098 4.098 16 C -0.042 4.042 17 C -0.443 4.443 18 S 0.487 5.513 19 C -0.147 4.147 20 N -0.269 5.269 21 C 0.300 3.700 22 O -0.410 6.410 23 C -0.120 4.120 24 C -0.190 4.190 25 C -0.204 4.204 26 N -0.237 5.237 27 H 0.096 0.904 28 H 0.090 0.910 29 H 0.067 0.933 30 H 0.095 0.905 31 H 0.060 0.940 32 H 0.079 0.921 33 H 0.115 0.885 34 H 0.088 0.912 35 H 0.136 0.864 36 H 0.154 0.846 37 H 0.224 0.776 38 H 0.270 0.730 39 H 0.143 0.857 40 H 0.074 0.926 41 H 0.111 0.889 42 H 0.071 0.929 43 H 0.077 0.923 44 H 0.083 0.917 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.074 1.067 -24.207 24.230 hybrid contribution -0.372 1.060 1.997 2.292 sum -0.298 2.127 -22.210 22.313 Atomic orbital electron populations 1.21705 0.92829 1.02915 1.02606 1.21876 0.97703 0.95465 1.02125 1.22166 0.80104 0.99059 1.02560 1.43877 1.05548 1.65895 1.05040 1.18558 1.09517 1.25319 0.92096 0.94385 1.26107 0.99508 0.99191 0.94084 1.69888 1.46516 1.37663 1.01003 0.85912 0.79796 0.78544 0.79135 1.16106 1.21603 1.18511 1.20983 0.87976 0.80007 0.85490 1.90541 1.16440 1.54304 1.87098 1.20381 0.95778 1.06509 0.87123 1.19394 0.95520 0.91424 0.97813 1.27507 1.08230 1.05530 1.03003 1.84411 1.23296 1.15739 1.27821 1.23739 0.96126 0.98164 0.96683 1.43064 1.27527 1.25302 1.31012 1.22096 0.83480 0.86865 0.77554 1.90619 1.69552 1.26953 1.53837 1.21409 0.93550 0.95185 1.01820 1.21667 1.00770 1.01081 0.95465 1.21872 1.02789 0.93235 1.02472 1.66019 1.07274 1.34103 1.16302 0.90377 0.91038 0.93323 0.90543 0.94005 0.92124 0.88524 0.91177 0.86435 0.84647 0.77551 0.72974 0.85651 0.92563 0.88921 0.92885 0.92304 0.91656 0.88484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 9.91 71.98 0.71 -2.48 16 2 C -0.13 -4.13 6.13 30.59 0.19 -3.94 16 3 C 0.08 3.13 3.74 86.38 0.32 3.45 16 4 N -0.48 -23.78 2.18 -635.54 -1.39 -25.16 16 5 C -0.33 -19.80 9.35 84.04 0.79 -19.01 16 6 H 0.04 2.72 7.92 -2.91 -0.02 2.70 16 7 C 0.01 0.74 5.24 84.92 0.45 1.18 16 8 N -0.91 -55.64 13.96 21.66 0.30 -55.34 16 9 Si 0.94 42.92 25.12 68.60 1.72 44.64 16 10 H -0.24 -9.28 6.67 99.48 0.66 -8.62 16 11 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 12 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 13 C 0.47 22.52 7.54 87.66 0.66 23.18 16 14 O -0.60 -35.34 15.32 -3.07 -0.05 -35.39 16 15 C -0.06 -1.90 4.81 29.10 0.14 -1.76 16 16 C 0.09 3.20 5.63 41.45 0.23 3.43 16 17 C -0.30 -8.59 11.05 66.73 0.74 -7.85 16 18 S 0.24 6.78 20.22 -56.49 -1.14 5.64 16 19 C 0.22 7.21 8.19 179.20 1.47 8.68 16 20 N -0.62 -15.71 5.30 -313.64 -1.66 -17.37 16 21 C 0.51 11.30 7.12 87.66 0.62 11.92 16 22 O -0.53 -14.66 13.45 -3.06 -0.04 -14.70 16 23 C -0.10 -1.27 3.26 -11.54 -0.04 -1.31 16 24 C -0.13 -1.61 8.48 71.98 0.61 -1.00 16 25 C -0.15 -1.37 9.09 71.98 0.65 -0.72 16 26 N -0.51 -19.90 9.73 -189.59 -1.84 -21.75 16 27 H 0.08 1.36 8.14 -2.39 -0.02 1.35 16 28 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 29 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.08 2.08 6.39 -2.39 -0.02 2.06 16 31 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.06 2.45 3.72 -2.38 -0.01 2.44 16 33 H 0.10 2.88 6.74 -2.39 -0.02 2.87 16 34 H 0.28 15.55 8.31 -92.71 -0.77 14.78 16 35 H 0.12 3.47 7.42 -2.39 -0.02 3.45 16 36 H 0.14 3.51 6.23 -2.39 -0.01 3.49 16 37 H 0.21 4.20 8.06 -2.91 -0.02 4.17 16 38 H 0.43 9.29 8.24 -92.71 -0.76 8.53 16 39 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.06 0.79 8.10 -2.39 -0.02 0.77 16 41 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.05 0.78 8.10 -2.39 -0.02 0.76 16 43 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.06 0.61 7.56 -2.39 -0.02 0.59 16 45 H 0.10 0.51 8.14 -2.39 -0.02 0.50 16 Total: -1.00 -86.47 377.60 3.66 -82.81 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: 0.21 Total: 22.83 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: 7.54 Total: 13.79 kcal Atomic # 7 Polarization: -115.03 SS G_CDS: -4.59 Total: -119.62 kcal Atomic # 8 Polarization: -50.00 SS G_CDS: -0.09 Total: -50.09 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 1.72 Total: 44.64 kcal Atomic # 16 Polarization: 6.78 SS G_CDS: -1.14 Total: 5.64 kcal Total: -86.47 3.66 -82.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056485472.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.791 kcal (2) G-P(sol) polarization free energy of solvation -86.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds