Wall clock time and date at job start Wed Apr 1 2020 00:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46499 * 120.00159 * 2 1 4 4 C 1.50696 * 109.47357 * 270.00139 * 3 2 1 5 5 H 1.08001 * 119.99896 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00215 * 179.97438 * 4 3 2 7 7 N 1.31510 * 120.00076 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 120.00001 * 180.02562 * 6 4 3 9 9 H 1.48495 * 109.47348 * 90.00165 * 8 6 4 10 10 H 1.48500 * 109.46904 * 210.00234 * 8 6 4 11 11 H 1.48501 * 109.47141 * 329.99893 * 8 6 4 12 12 C 1.34779 * 120.00394 * 180.02562 * 2 1 3 13 13 O 1.21276 * 120.00330 * 180.02562 * 12 2 1 14 14 C 1.50703 * 119.99387 * 359.97438 * 12 2 1 15 15 C 1.50703 * 109.46981 * 180.02562 * 14 12 2 16 16 C 1.33442 * 122.71850 * 124.94811 * 15 14 12 17 17 S 1.76172 * 108.06148 * 180.02562 * 16 15 14 18 18 C 1.70968 * 90.34164 * 0.02562 * 17 16 15 19 19 N 1.39006 * 124.94258 * 179.97438 * 18 17 16 20 20 C 1.34776 * 120.00092 * 0.03053 * 19 18 17 21 21 O 1.21286 * 119.99984 * 359.97438 * 20 19 18 22 22 C 1.50698 * 119.99937 * 179.97438 * 20 19 18 23 23 C 1.53002 * 109.47045 * 179.97438 * 22 20 19 24 24 C 1.52992 * 109.47100 * 299.99825 * 22 20 19 25 25 C 1.53004 * 109.47180 * 59.99812 * 22 20 19 26 26 N 1.29623 * 110.10783 * 359.97438 * 18 17 16 27 27 H 1.08999 * 109.47066 * 269.99511 * 1 2 3 28 28 H 1.09000 * 109.47391 * 29.99526 * 1 2 3 29 29 H 1.09002 * 109.47409 * 149.99854 * 1 2 3 30 30 H 1.09005 * 109.46758 * 30.00135 * 3 2 1 31 31 H 1.09001 * 109.47566 * 150.00125 * 3 2 1 32 32 H 0.96999 * 120.00207 * 180.02562 * 7 6 4 33 33 H 1.08993 * 109.47256 * 60.00289 * 14 12 2 34 34 H 1.08999 * 109.47169 * 299.99514 * 14 12 2 35 35 H 1.07997 * 125.96916 * 0.04862 * 16 15 14 36 36 H 0.96995 * 119.99839 * 180.02562 * 19 18 17 37 37 H 1.08995 * 109.47051 * 60.00074 * 23 22 20 38 38 H 1.09005 * 109.46801 * 180.02562 * 23 22 20 39 39 H 1.09004 * 109.46844 * 299.99776 * 23 22 20 40 40 H 1.09001 * 109.47526 * 60.00245 * 24 22 20 41 41 H 1.09005 * 109.47462 * 179.97438 * 24 22 20 42 42 H 1.09003 * 109.47544 * 300.00080 * 24 22 20 43 43 H 1.09002 * 109.46664 * 59.99793 * 25 22 20 44 44 H 1.08999 * 109.46851 * 179.97438 * 25 22 20 45 45 H 1.09003 * 109.46738 * 300.00217 * 25 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0981 1.0958 -2.2417 6 6 3.1260 2.8780 -1.6727 7 7 3.5533 3.6181 -0.6731 8 14 3.4367 3.4176 -3.4339 9 1 2.3064 4.2603 -3.9002 10 1 4.6968 4.2008 -3.4966 11 1 3.5540 2.2207 -4.3050 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0001 14 6 1.3854 -2.4723 -0.0005 15 6 2.3647 -3.6178 -0.0005 16 6 2.3445 -4.5839 0.9197 17 16 3.6466 -5.7130 0.5548 18 6 4.0938 -4.7745 -0.8025 19 7 5.1429 -5.0713 -1.6650 20 6 5.8940 -6.1712 -1.4590 21 8 5.6550 -6.9019 -0.5209 22 6 7.0309 -6.4932 -2.3943 23 6 7.7161 -7.7833 -1.9391 24 6 6.4878 -6.6768 -3.8128 25 6 8.0434 -5.3462 -2.3803 26 7 3.3123 -3.7460 -0.9102 27 1 -0.3633 -0.0001 1.0277 28 1 -0.3634 0.8900 -0.5137 29 1 -0.3634 -0.8900 -0.5139 30 1 1.6084 2.0283 0.5139 31 1 3.1499 1.1384 0.5138 32 1 4.0295 4.4443 -0.8503 33 1 0.7584 -2.5298 -0.8902 34 1 0.7591 -2.5302 0.8897 35 1 1.6509 -4.6605 1.7440 36 1 5.3342 -4.4868 -2.4150 37 1 6.9950 -8.6005 -1.9488 38 1 8.5387 -8.0159 -2.6154 39 1 8.1030 -7.6520 -0.9285 40 1 6.0000 -5.7575 -4.1370 41 1 7.3102 -6.9093 -4.4895 42 1 5.7665 -7.4939 -3.8229 43 1 8.4302 -5.2154 -1.3697 44 1 8.8659 -5.5793 -3.0565 45 1 7.5554 -4.4269 -2.7044 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079729574.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:55 Heat of formation + Delta-G solvation = -26.849608 kcal Electronic energy + Delta-G solvation = -27001.474062 eV Core-core repulsion = 23146.152861 eV Total energy + Delta-G solvation = -3855.321201 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.99270 -39.81725 -38.38089 -36.19419 -35.24690 -34.62494 -32.62235 -31.27168 -28.53248 -27.79731 -27.58444 -27.17824 -25.62096 -25.17804 -23.16974 -22.33569 -20.97379 -19.35891 -18.44244 -17.88853 -17.01504 -16.66727 -16.49274 -16.15855 -15.84845 -15.35356 -15.13369 -14.61554 -14.42631 -14.33743 -14.26043 -13.66131 -13.55781 -12.91128 -12.88657 -12.78131 -12.65311 -12.46227 -12.41201 -12.12677 -12.12451 -11.78487 -11.68273 -11.42344 -11.39059 -11.29866 -11.12316 -10.92500 -10.79263 -10.52723 -10.11236 -10.02781 -9.57210 -9.49137 -9.00167 -8.81855 -8.39792 -8.14373 -7.54986 -6.00134 -4.04284 0.84187 1.25816 1.96327 2.08654 2.47962 3.09956 3.31854 3.38045 3.42758 3.56719 4.03385 4.12764 4.28837 4.38697 4.48554 4.56678 4.72678 5.13284 5.17696 5.22439 5.28762 5.30042 5.35608 5.38611 5.45143 5.47156 5.48732 5.59000 5.66766 5.69510 5.77239 5.78996 5.86521 5.90433 5.99685 6.24833 6.29226 6.74783 7.12337 7.50243 7.55084 7.62180 7.97015 7.99829 8.29186 8.50375 8.96461 9.21425 9.60596 11.07959 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011582 B = 0.003047 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.869847 B = 9185.753667 C =11034.300239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.607 5.607 3 C 0.247 3.753 4 C -0.522 4.522 5 H 0.057 0.943 6 C 0.060 3.940 7 N -0.896 5.896 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.274 1.274 12 C 0.509 3.491 13 O -0.524 6.524 14 C -0.069 4.069 15 C 0.122 3.878 16 C -0.315 4.315 17 S 0.217 5.783 18 C 0.241 3.759 19 N -0.619 5.619 20 C 0.521 3.479 21 O -0.505 6.505 22 C -0.076 4.076 23 C -0.129 4.129 24 C -0.146 4.146 25 C -0.148 4.148 26 N -0.474 5.474 27 H 0.043 0.957 28 H 0.073 0.927 29 H 0.056 0.944 30 H 0.031 0.969 31 H 0.042 0.958 32 H 0.262 0.738 33 H 0.104 0.896 34 H 0.102 0.898 35 H 0.175 0.825 36 H 0.424 0.576 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.075 0.925 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.075 0.925 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.298 -22.893 -1.988 23.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.340 5.340 3 C 0.128 3.872 4 C -0.561 4.561 5 H 0.075 0.925 6 C -0.142 4.142 7 N -0.536 5.536 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.294 3.706 13 O -0.399 6.399 14 C -0.112 4.112 15 C -0.011 4.011 16 C -0.455 4.455 17 S 0.466 5.534 18 C -0.127 4.127 19 N -0.269 5.269 20 C 0.307 3.693 21 O -0.379 6.379 22 C -0.079 4.079 23 C -0.186 4.186 24 C -0.203 4.203 25 C -0.205 4.205 26 N -0.195 5.195 27 H 0.062 0.938 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.049 0.951 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.192 0.808 36 H 0.263 0.737 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.094 0.906 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.094 0.906 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.437 -23.823 -1.312 23.983 hybrid contribution -0.474 1.718 -1.422 2.280 sum 1.962 -22.105 -2.734 22.359 Atomic orbital electron populations 1.21633 0.81604 1.02545 1.00307 1.48134 1.06035 1.07720 1.72155 1.19247 0.92500 0.78103 0.97390 1.21454 1.36220 1.06054 0.92403 0.92484 1.24938 0.95445 0.96463 0.97357 1.69934 1.38639 1.14326 1.30684 0.86507 0.77630 0.78539 0.84809 1.20668 1.21136 1.19911 1.19977 0.88160 0.84496 0.77957 1.90685 1.13660 1.86847 1.48736 1.20367 0.96119 0.90253 1.04465 1.19182 0.94804 0.96148 0.90955 1.27129 1.08341 1.02595 1.07470 1.84574 1.23727 1.24006 1.21056 1.23369 0.95535 0.96381 0.97407 1.42856 1.28105 1.26678 1.29219 1.21092 0.82941 0.79101 0.86122 1.90638 1.68669 1.47991 1.30609 1.20785 0.93103 0.98955 0.95069 1.21705 1.00267 0.94691 1.01963 1.21942 1.02031 1.02867 0.93470 1.21961 0.98535 0.96513 1.03495 1.66037 1.06045 1.18123 1.29325 0.93811 0.90838 0.92503 0.95104 0.93982 0.92797 0.87839 0.87933 0.80789 0.73720 0.91637 0.91440 0.91565 0.91739 0.90605 0.91689 0.91542 0.90600 0.91590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.32 10.24 59.84 0.61 1.94 16 2 N -0.61 -13.26 2.86 -182.96 -0.52 -13.78 16 3 C 0.25 6.65 5.16 -5.20 -0.03 6.62 16 4 C -0.52 -15.19 9.39 -34.44 -0.32 -15.51 16 5 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 7 N -0.90 -27.16 13.29 55.43 0.74 -26.42 16 8 Si 0.90 22.23 29.54 -169.99 -5.02 17.21 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 12 C 0.51 11.09 7.64 -10.98 -0.08 11.01 16 13 O -0.52 -13.93 15.02 5.56 0.08 -13.85 16 14 C -0.07 -1.10 4.75 -29.03 -0.14 -1.23 16 15 C 0.12 2.06 5.63 -84.20 -0.47 1.58 16 16 C -0.32 -4.42 11.05 29.06 0.32 -4.10 16 17 S 0.22 3.05 20.22 -107.50 -2.17 0.87 16 18 C 0.24 3.82 8.19 -87.35 -0.72 3.11 16 19 N -0.62 -7.89 5.19 -13.07 -0.07 -7.96 16 20 C 0.52 5.97 6.44 -10.99 -0.07 5.90 16 21 O -0.51 -6.95 13.45 5.55 0.07 -6.88 16 22 C -0.08 -0.59 0.87 -155.66 -0.14 -0.73 16 23 C -0.13 -0.92 7.76 37.16 0.29 -0.63 16 24 C -0.15 -0.90 8.37 37.15 0.31 -0.59 16 25 C -0.15 -1.05 8.37 37.16 0.31 -0.74 16 26 N -0.47 -8.74 9.73 -11.28 -0.11 -8.85 16 27 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 29 H 0.06 0.72 6.44 -51.93 -0.33 0.39 16 30 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 31 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 32 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 33 H 0.10 1.45 7.40 -51.93 -0.38 1.07 16 34 H 0.10 1.25 7.99 -51.93 -0.41 0.83 16 35 H 0.17 1.86 8.06 -52.49 -0.42 1.44 16 36 H 0.42 4.73 7.66 -40.82 -0.31 4.42 16 37 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 38 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 40 H 0.06 0.39 7.57 -51.93 -0.39 0.00 16 41 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.07 0.49 7.56 -51.93 -0.39 0.09 16 LS Contribution 387.34 15.07 5.84 5.84 Total: -1.00 -37.64 387.34 -8.18 -45.82 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -6.80 Total: -0.26 kcal Atomic # 6 Polarization: 8.48 SS G_CDS: -0.22 Total: 8.26 kcal Atomic # 7 Polarization: -57.04 SS G_CDS: 0.04 Total: -57.01 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: 0.16 Total: -20.73 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Atomic # 16 Polarization: 3.05 SS G_CDS: -2.17 Total: 0.87 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -37.64 -8.18 -45.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079729574.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.974 kcal (2) G-P(sol) polarization free energy of solvation -37.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds