Wall clock time and date at job start Wed Apr 1 2020 01:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.46898 * 2 1 4 4 N 1.46503 * 109.47096 * 180.02562 * 3 2 1 5 5 C 1.34779 * 120.00034 * 180.02562 * 4 3 2 6 6 O 1.21542 * 119.99958 * 359.97438 * 5 4 3 7 7 N 1.34773 * 120.00204 * 179.97438 * 5 4 3 8 8 C 1.34769 * 120.00275 * 179.97438 * 7 5 4 9 9 O 1.21236 * 120.00222 * 0.02562 * 8 7 5 10 10 C 1.50696 * 120.00261 * 180.02562 * 8 7 5 11 11 N 1.46507 * 109.47376 * 180.02562 * 10 8 7 12 12 C 1.39929 * 119.99805 * 179.97438 * 11 10 8 13 13 C 1.38713 * 120.08073 * 0.02562 * 12 11 10 14 14 C 1.38220 * 120.01474 * 179.97438 * 13 12 11 15 15 C 1.38522 * 120.17625 * 0.02562 * 14 13 12 16 16 F 1.35098 * 119.92139 * 179.97438 * 15 14 13 17 17 C 1.38364 * 120.16003 * 359.97438 * 15 14 13 18 18 C 1.38720 * 119.97940 * 359.97438 * 17 15 14 19 19 O 1.35794 * 120.08317 * 180.29569 * 18 17 15 20 20 C 1.34801 * 117.00313 * 354.40795 * 19 18 17 21 21 H 1.07999 * 119.99778 * 5.07674 * 20 19 18 22 22 C 1.38629 * 119.99953 * 185.06987 * 20 19 18 23 23 N 1.31578 * 120.00246 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99841 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47168 * 60.00270 * 24 22 20 26 26 H 1.48506 * 109.46951 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.46931 * 300.00114 * 24 22 20 28 28 H 1.09003 * 109.47130 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47137 * 299.99861 * 1 2 3 30 30 H 1.09003 * 109.47408 * 60.00047 * 1 2 3 31 31 H 1.08997 * 109.47137 * 240.00138 * 2 1 3 32 32 H 1.09003 * 109.47408 * 119.99952 * 2 1 3 33 33 H 1.09000 * 109.47610 * 60.00132 * 3 2 1 34 34 H 1.09003 * 109.47052 * 300.00170 * 3 2 1 35 35 H 0.96997 * 119.99962 * 359.97438 * 4 3 2 36 36 H 0.96997 * 119.99792 * 0.02562 * 7 5 4 37 37 H 1.09001 * 109.47753 * 59.99604 * 10 8 7 38 38 H 1.09003 * 109.46874 * 299.99807 * 10 8 7 39 39 H 0.96996 * 119.99575 * 359.97438 * 11 10 8 40 40 H 1.07995 * 119.99180 * 359.97438 * 13 12 11 41 41 H 1.08000 * 119.90951 * 180.02562 * 14 13 12 42 42 H 1.07997 * 120.00821 * 180.02562 * 17 15 14 43 43 H 0.97003 * 120.00089 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1788 2.6098 -0.0002 6 8 3.5710 3.6623 0.0002 7 7 5.5265 2.6099 -0.0003 8 6 6.2003 3.7770 -0.0004 9 8 5.5942 4.8270 0.0000 10 6 7.7073 3.7771 -0.0010 11 7 8.1956 5.1584 -0.0004 12 6 9.5714 5.4141 -0.0003 13 6 10.4742 4.3610 -0.0013 14 6 11.8329 4.6151 -0.0017 15 6 12.2972 5.9202 -0.0006 16 9 13.6262 6.1627 -0.0005 17 6 11.4030 6.9761 0.0004 18 6 10.0381 6.7286 -0.0002 19 8 9.1587 7.7633 -0.0053 20 6 9.6730 9.0043 0.1075 21 1 10.7436 9.1465 0.1139 22 6 8.8277 10.0978 0.2151 23 7 7.5234 9.9244 0.2076 24 14 9.5405 11.8174 0.3707 25 1 10.3683 12.1202 -0.8244 26 1 8.4352 12.8042 0.4707 27 1 10.3845 11.8949 1.5901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6765 1.9563 -0.8900 35 1 3.9899 0.6025 -0.0006 36 1 6.0115 1.7699 -0.0010 37 1 8.0704 3.2634 -0.8911 38 1 8.0710 3.2632 0.8888 39 1 7.5653 5.8956 -0.0001 40 1 10.1155 3.3424 -0.0017 41 1 12.5343 3.7939 -0.0029 42 1 11.7677 7.9927 0.0009 43 1 6.9320 10.6895 0.2833 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000150779321.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:44:11 Heat of formation + Delta-G solvation = -104.196260 kcal Electronic energy + Delta-G solvation = -28199.755369 eV Core-core repulsion = 23774.866990 eV Total energy + Delta-G solvation = -4424.888380 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -48.07130 -41.27765 -39.30659 -38.63243 -36.57644 -36.06636 -34.74559 -34.43671 -32.80147 -32.27282 -29.42773 -29.25843 -27.06045 -25.88875 -25.37254 -22.82500 -22.07452 -21.65884 -20.98739 -20.56694 -19.03482 -18.17555 -17.98242 -17.07367 -16.56675 -16.11831 -15.94025 -15.76178 -15.45281 -15.12049 -14.89490 -14.87894 -14.62924 -14.33769 -14.14936 -13.72250 -13.64335 -13.39415 -13.28832 -13.10877 -12.85516 -12.66138 -12.51450 -12.12211 -11.90759 -11.61810 -11.42367 -11.37867 -11.28928 -11.04742 -10.83757 -10.57941 -10.40905 -10.24214 -9.73883 -9.56475 -9.43682 -9.36626 -8.82333 -7.76394 -6.52013 -6.42099 -3.99560 1.99817 2.06830 2.08599 2.21698 3.13869 3.16560 3.17704 3.20736 3.53462 3.94551 4.03046 4.34875 4.42310 4.44148 4.49684 4.74322 4.95494 5.10697 5.15712 5.17178 5.18501 5.26651 5.27854 5.29647 5.52574 5.54839 5.64659 5.70684 5.80752 5.90296 6.04436 6.05749 6.20207 6.39198 6.53571 6.77994 6.99151 7.09268 7.23411 7.27464 7.57479 7.88725 7.92318 8.01116 8.18772 8.37134 9.01467 9.66366 10.74123 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011741 B = 0.002420 C = 0.002011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.224566 B =11567.226017 C =13917.159718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.135 4.135 3 C 0.132 3.868 4 N -0.741 5.741 5 C 0.691 3.309 6 O -0.525 6.525 7 N -0.691 5.691 8 C 0.507 3.493 9 O -0.444 6.444 10 C 0.121 3.879 11 N -0.737 5.737 12 C 0.151 3.849 13 C -0.146 4.146 14 C -0.200 4.200 15 C 0.092 3.908 16 F -0.157 7.157 17 C -0.243 4.243 18 C 0.126 3.874 19 O -0.170 6.170 20 C -0.391 4.391 21 H 0.092 0.908 22 C 0.041 3.959 23 N -0.855 5.855 24 Si 0.941 3.059 25 H -0.270 1.270 26 H -0.278 1.278 27 H -0.270 1.270 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.397 0.603 36 H 0.409 0.591 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.421 0.579 40 H 0.120 0.880 41 H 0.117 0.883 42 H 0.139 0.861 43 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.273 -23.312 -0.272 24.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.173 4.173 3 C 0.009 3.991 4 N -0.399 5.399 5 C 0.391 3.609 6 O -0.396 6.396 7 N -0.358 5.358 8 C 0.292 3.708 9 O -0.309 6.309 10 C -0.009 4.009 11 N -0.376 5.376 12 C 0.050 3.950 13 C -0.170 4.170 14 C -0.220 4.220 15 C 0.071 3.929 16 F -0.136 7.136 17 C -0.265 4.265 18 C 0.070 3.930 19 O -0.073 6.073 20 C -0.467 4.467 21 H 0.110 0.890 22 C -0.165 4.165 23 N -0.489 5.489 24 Si 0.765 3.235 25 H -0.195 1.195 26 H -0.203 1.203 27 H -0.195 1.195 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.231 0.769 36 H 0.244 0.756 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.261 0.739 40 H 0.138 0.862 41 H 0.135 0.865 42 H 0.156 0.844 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.713 -21.582 -0.276 22.920 hybrid contribution 0.963 0.126 0.087 0.975 sum -6.750 -21.456 -0.189 22.493 Atomic orbital electron populations 1.21680 0.94338 1.02237 1.02587 1.21735 0.97154 0.95607 1.02768 1.21360 0.77578 0.97244 1.02964 1.45250 1.07702 1.06833 1.80112 1.16144 0.81321 0.84855 0.78563 1.91119 1.66860 1.29731 1.51861 1.44091 1.06833 1.11474 1.73427 1.20997 0.90659 0.82973 0.76220 1.90927 1.69333 1.30125 1.40556 1.20856 0.88381 0.88268 1.03353 1.44050 1.04112 1.05015 1.84458 1.17008 0.83420 0.90602 1.03940 1.19891 0.91612 0.96386 1.09083 1.20246 0.95419 0.94294 1.12088 1.17246 0.76382 0.93682 1.05611 1.91381 1.32240 1.95451 1.94546 1.20778 0.92114 0.99384 1.14223 1.18574 0.88747 0.87656 0.98057 1.83926 1.31642 1.13164 1.78602 1.21249 0.93256 0.79686 1.52485 0.89033 1.25296 0.95167 0.99519 0.96486 1.70044 1.02039 1.31912 1.44880 0.85783 0.78377 0.80060 0.79239 1.19463 1.20285 1.19467 0.92098 0.92203 0.92198 0.91217 0.91216 0.91211 0.91218 0.76861 0.75591 0.89317 0.89328 0.73856 0.86184 0.86492 0.84355 0.91822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.64 9.91 37.16 0.37 -0.27 16 2 C -0.13 -0.56 6.05 -26.73 -0.16 -0.73 16 3 C 0.13 0.98 5.67 -4.04 -0.02 0.95 16 4 N -0.74 -5.54 5.56 -65.23 -0.36 -5.90 16 5 C 0.69 8.63 8.50 -86.92 -0.74 7.89 16 6 O -0.53 -9.89 14.74 -18.48 -0.27 -10.16 16 7 N -0.69 -6.76 5.24 -15.78 -0.08 -6.84 16 8 C 0.51 7.29 7.84 -10.99 -0.09 7.20 16 9 O -0.44 -9.33 14.07 -18.21 -0.26 -9.59 16 10 C 0.12 1.49 5.40 -5.19 -0.03 1.46 16 11 N -0.74 -13.78 5.70 -59.63 -0.34 -14.12 16 12 C 0.15 3.01 6.67 -83.52 -0.56 2.45 16 13 C -0.15 -2.39 9.31 -39.41 -0.37 -2.76 16 14 C -0.20 -3.43 10.02 -39.48 -0.40 -3.83 16 15 C 0.09 1.82 7.29 -39.43 -0.29 1.54 16 16 F -0.16 -3.05 17.26 2.25 0.04 -3.01 16 17 C -0.24 -5.45 9.14 -39.36 -0.36 -5.81 16 18 C 0.13 2.99 6.67 -38.94 -0.26 2.73 16 19 O -0.17 -4.76 9.00 -0.01 0.00 -4.76 16 20 C -0.39 -10.95 9.49 30.88 0.29 -10.66 16 21 H 0.09 2.39 5.21 -52.49 -0.27 2.12 16 22 C 0.04 1.13 5.49 -17.52 -0.10 1.03 16 23 N -0.85 -25.49 13.67 55.48 0.76 -24.73 16 24 Si 0.94 20.97 29.55 -169.99 -5.02 15.95 16 25 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 26 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 27 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 28 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.40 1.38 8.49 -40.82 -0.35 1.04 16 36 H 0.41 1.67 8.71 -40.82 -0.36 1.32 16 37 H 0.09 0.84 7.95 -51.93 -0.41 0.42 16 38 H 0.09 0.84 7.95 -51.93 -0.41 0.43 16 39 H 0.42 9.52 6.80 -40.82 -0.28 9.25 16 40 H 0.12 1.46 6.73 -52.49 -0.35 1.11 16 41 H 0.12 1.68 8.06 -52.49 -0.42 1.25 16 42 H 0.14 3.15 5.64 -52.49 -0.30 2.85 16 43 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 374.42 15.07 5.64 5.64 Total: -1.00 -38.54 374.42 -7.84 -46.39 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -5.24 Total: 9.92 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: -2.70 Total: 1.21 kcal Atomic # 7 Polarization: -51.57 SS G_CDS: -0.03 Total: -51.59 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -0.53 Total: -24.51 kcal Atomic # 9 Polarization: -3.05 SS G_CDS: 0.04 Total: -3.01 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -38.54 -7.84 -46.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000150779321.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.810 kcal (2) G-P(sol) polarization free energy of solvation -38.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds