Wall clock time and date at job start Wed Apr 1 2020 00:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47316 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47182 * 120.00052 * 9 7 5 12 12 H 1.48492 * 109.47189 * 240.00072 * 9 7 5 13 13 N 1.46490 * 109.47115 * 64.99762 * 3 2 1 14 14 C 1.34777 * 120.00429 * 275.00047 * 13 3 2 15 15 O 1.21283 * 119.99304 * 0.02562 * 14 13 3 16 16 C 1.50695 * 120.00578 * 180.02562 * 14 13 3 17 17 C 1.50695 * 109.47300 * 179.97438 * 16 14 13 18 18 C 1.33442 * 122.71528 * 124.73645 * 17 16 14 19 19 S 1.76174 * 108.06255 * 179.97438 * 18 17 16 20 20 C 1.70966 * 90.34098 * 0.27534 * 19 18 17 21 21 N 1.39002 * 124.94722 * 179.87547 * 20 19 18 22 22 C 1.34772 * 119.99833 * 359.96195 * 21 20 19 23 23 O 1.21290 * 120.00138 * 359.97438 * 22 21 20 24 24 C 1.50700 * 120.00095 * 179.97438 * 22 21 20 25 25 C 1.53004 * 109.46963 * 59.99607 * 24 22 21 26 26 C 1.53002 * 109.47054 * 179.97438 * 24 22 21 27 27 N 1.29631 * 110.11068 * 359.83746 * 20 19 18 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 31 31 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 32 32 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 33 33 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 34 34 H 0.97001 * 120.00176 * 95.00254 * 13 3 2 35 35 H 1.08995 * 109.47428 * 300.00429 * 16 14 13 36 36 H 1.09008 * 109.47339 * 60.00017 * 16 14 13 37 37 H 1.07998 * 125.96851 * 0.03380 * 18 17 16 38 38 H 0.96999 * 120.00466 * 179.97438 * 21 20 19 39 39 H 1.08998 * 109.47368 * 299.99788 * 24 22 21 40 40 H 1.08994 * 109.46814 * 299.99855 * 25 24 22 41 41 H 1.08999 * 109.47297 * 60.00308 * 25 24 22 42 42 H 1.08998 * 109.46851 * 179.97438 * 25 24 22 43 43 H 1.09006 * 109.47085 * 60.00596 * 26 24 22 44 44 H 1.09009 * 109.46700 * 180.02562 * 26 24 22 45 45 H 1.08999 * 109.47506 * 299.99876 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5987 1.5463 -0.1942 11 1 6.4971 -0.5175 -1.4628 12 1 6.3990 1.6166 -2.6101 13 7 1.6524 2.0975 1.2517 14 6 0.4351 2.6644 1.3669 15 8 -0.3396 2.6319 0.4343 16 6 0.0366 3.3387 2.6543 17 6 -1.3609 3.8871 2.5225 18 6 -2.3419 3.5728 3.3708 19 16 -3.7983 4.4225 2.8605 20 6 -2.9478 5.1134 1.5482 21 7 -3.4977 5.9799 0.6107 22 6 -4.7954 6.3326 0.6987 23 8 -5.4837 5.8934 1.5957 24 6 -5.3915 7.2725 -0.3173 25 6 -5.2690 6.6587 -1.7134 26 6 -6.8679 7.5064 0.0089 27 7 -1.7152 4.7120 1.5551 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 1.8934 -0.5137 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 3.8293 -0.0604 -2.9502 34 1 2.2719 2.1232 1.9977 35 1 0.0680 2.6148 3.4685 36 1 0.7280 4.1543 2.8665 37 1 -2.2574 2.9137 4.2221 38 1 -2.9474 6.3308 -0.1070 39 1 -4.8581 8.2227 -0.2901 40 1 -4.2173 6.4918 -1.9459 41 1 -5.8025 5.7086 -1.7407 42 1 -5.7005 7.3384 -2.4482 43 1 -6.9555 7.9436 1.0035 44 1 -7.2991 8.1860 -0.7264 45 1 -7.4011 6.5562 -0.0186 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183823868.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:58:12 Heat of formation + Delta-G solvation = -37.286645 kcal Electronic energy + Delta-G solvation = -26928.545639 eV Core-core repulsion = 23072.771854 eV Total energy + Delta-G solvation = -3855.773785 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.83877 -39.79738 -38.44821 -35.35668 -35.04591 -34.80308 -32.34998 -31.52471 -30.54604 -28.07691 -27.55026 -26.63617 -25.41703 -23.28347 -22.76802 -21.24836 -20.60405 -19.42649 -19.18134 -18.22810 -17.32821 -17.14307 -16.45055 -16.13454 -15.69345 -15.26083 -15.03517 -14.66741 -14.59329 -14.32102 -13.87292 -13.69995 -13.23371 -13.06747 -12.78844 -12.74180 -12.59885 -12.53110 -12.44357 -11.72113 -11.62740 -11.57362 -11.40231 -11.27320 -11.19505 -10.92648 -10.89905 -10.78737 -10.27314 -10.14821 -10.08866 -9.58383 -9.54159 -9.04152 -8.99335 -8.86271 -8.46176 -8.18492 -7.70805 -6.09287 -4.18115 0.80858 1.22467 1.93390 2.04683 2.44506 3.06285 3.24847 3.32762 3.35428 3.56580 4.07363 4.24082 4.39569 4.46332 4.46860 4.54075 4.86927 5.18765 5.21016 5.22018 5.29129 5.40157 5.43402 5.48968 5.57977 5.66966 5.72984 5.77031 5.83637 5.87401 6.26914 6.43359 6.50405 6.70387 6.71428 7.08892 7.25397 7.42902 7.51178 7.55301 7.67099 7.79669 7.95035 7.96492 8.23091 8.76706 8.84397 9.26968 9.50115 10.96096 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017220 B = 0.002477 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.590306 B =11302.496621 C =12084.661120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.127 4.127 3 C 0.272 3.728 4 H 0.048 0.952 5 C -0.531 4.531 6 H 0.061 0.939 7 C 0.065 3.935 8 N -0.883 5.883 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.713 5.713 14 C 0.505 3.495 15 O -0.531 6.531 16 C -0.073 4.073 17 C 0.123 3.877 18 C -0.315 4.315 19 S 0.218 5.782 20 C 0.239 3.761 21 N -0.621 5.621 22 C 0.515 3.485 23 O -0.506 6.506 24 C -0.105 4.105 25 C -0.151 4.151 26 C -0.134 4.134 27 N -0.475 5.475 28 H 0.021 0.979 29 H 0.048 0.952 30 H 0.038 0.962 31 H 0.030 0.970 32 H 0.097 0.903 33 H 0.263 0.737 34 H 0.387 0.613 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.175 0.825 38 H 0.424 0.576 39 H 0.106 0.894 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.074 0.926 43 H 0.064 0.936 44 H 0.066 0.934 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.395 13.067 7.947 22.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.065 0.935 5 C -0.570 4.570 6 H 0.079 0.921 7 C -0.138 4.138 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.362 5.362 14 C 0.289 3.711 15 O -0.408 6.408 16 C -0.116 4.116 17 C -0.010 4.010 18 C -0.455 4.455 19 S 0.468 5.532 20 C -0.129 4.129 21 N -0.271 5.271 22 C 0.301 3.699 23 O -0.380 6.380 24 C -0.126 4.126 25 C -0.209 4.209 26 C -0.192 4.192 27 N -0.196 5.196 28 H 0.040 0.960 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.116 0.884 33 H 0.073 0.927 34 H 0.219 0.781 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.192 0.808 38 H 0.263 0.737 39 H 0.124 0.876 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.093 0.907 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -18.169 12.948 7.589 23.566 hybrid contribution 2.688 -0.283 -0.158 2.707 sum -15.481 12.664 7.430 21.337 Atomic orbital electron populations 1.21821 0.98399 0.97838 1.01195 1.21928 0.92536 0.99967 1.02135 1.18728 0.94023 0.89043 0.81195 0.93456 1.21293 0.90848 1.38648 1.06169 0.92073 1.24895 0.98521 0.94917 0.95451 1.69913 1.34954 1.37841 1.09336 0.86419 0.85024 0.77720 0.78078 1.19758 1.20929 1.20942 1.46447 1.14662 1.56597 1.18478 1.20004 0.82886 0.79507 0.88733 1.90687 1.51287 1.58725 1.40097 1.20356 0.91651 1.00866 0.98739 1.19142 0.96531 0.95270 0.90035 1.27146 0.97746 1.11864 1.08733 1.84609 1.09863 1.39189 1.19574 1.23366 0.93160 0.98990 0.97353 1.42868 1.11622 1.44166 1.28401 1.21223 0.80071 0.81918 0.86681 1.90650 1.58999 1.53662 1.34658 1.21285 0.98935 0.98228 0.94151 1.21875 1.03132 1.01894 0.93951 1.21661 0.92482 1.02842 1.02223 1.66032 1.13411 1.15471 1.24700 0.96037 0.93316 0.94290 0.95117 0.88435 0.92702 0.78137 0.87887 0.87863 0.80811 0.73733 0.87616 0.91646 0.91577 0.90659 0.91670 0.91456 0.91569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.51 37.16 0.32 -2.79 16 2 C -0.13 -3.13 5.45 -26.73 -0.15 -3.27 16 3 C 0.27 6.90 2.24 -69.08 -0.15 6.74 16 4 H 0.05 1.41 7.58 -51.93 -0.39 1.01 16 5 C -0.53 -14.08 8.73 -34.44 -0.30 -14.38 16 6 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.95 11.29 55.43 0.63 -24.33 16 9 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 10 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 N -0.71 -14.76 5.02 -54.94 -0.28 -15.04 16 14 C 0.51 10.11 6.37 -10.99 -0.07 10.04 16 15 O -0.53 -12.70 12.58 5.56 0.07 -12.63 16 16 C -0.07 -1.09 6.19 -29.04 -0.18 -1.27 16 17 C 0.12 1.97 5.63 -84.20 -0.47 1.49 16 18 C -0.31 -4.27 11.05 29.06 0.32 -3.95 16 19 S 0.22 2.95 20.22 -107.50 -2.17 0.78 16 20 C 0.24 3.57 8.19 -87.34 -0.72 2.86 16 21 N -0.62 -7.22 5.30 -13.07 -0.07 -7.29 16 22 C 0.51 5.38 7.12 -10.99 -0.08 5.30 16 23 O -0.51 -6.61 13.45 5.55 0.07 -6.53 16 24 C -0.10 -0.69 3.26 -91.77 -0.30 -0.98 16 25 C -0.15 -0.90 9.09 37.16 0.34 -0.56 16 26 C -0.13 -0.85 8.48 37.16 0.32 -0.53 16 27 N -0.47 -8.19 9.72 -11.28 -0.11 -8.30 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.05 1.20 7.85 -51.93 -0.41 0.80 16 30 H 0.04 0.87 5.64 -51.93 -0.29 0.58 16 31 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 33 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 34 H 0.39 6.86 8.54 -40.82 -0.35 6.51 16 35 H 0.10 1.20 8.03 -51.93 -0.42 0.78 16 36 H 0.10 1.34 8.14 -51.92 -0.42 0.92 16 37 H 0.17 1.83 8.06 -52.49 -0.42 1.41 16 38 H 0.42 4.09 8.24 -40.82 -0.34 3.75 16 39 H 0.11 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.39 7.56 -51.93 -0.39 0.00 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.06 0.45 8.10 -51.93 -0.42 0.03 16 44 H 0.07 0.29 8.14 -51.92 -0.42 -0.13 16 45 H 0.07 0.49 8.10 -51.93 -0.42 0.07 16 LS Contribution 380.73 15.07 5.74 5.74 Total: -1.00 -34.27 380.73 -9.02 -43.29 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -6.66 Total: 8.27 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: -1.22 Total: 0.36 kcal Atomic # 7 Polarization: -55.12 SS G_CDS: 0.17 Total: -54.95 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: 0.14 Total: -19.16 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: 2.95 SS G_CDS: -2.17 Total: 0.78 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.27 -9.02 -43.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183823868.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.003 kcal (2) G-P(sol) polarization free energy of solvation -34.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds