Wall clock time and date at job start Wed Apr 1 2020 00:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47316 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47182 * 120.00052 * 9 7 5 12 12 H 1.48492 * 109.47189 * 240.00072 * 9 7 5 13 13 N 1.46490 * 109.47115 * 64.99762 * 3 2 1 14 14 C 1.34777 * 120.00429 * 275.00047 * 13 3 2 15 15 O 1.21283 * 119.99304 * 0.02562 * 14 13 3 16 16 C 1.50695 * 120.00578 * 180.02562 * 14 13 3 17 17 C 1.50695 * 109.47300 * 179.97438 * 16 14 13 18 18 C 1.33442 * 122.71528 * 124.73645 * 17 16 14 19 19 S 1.76174 * 108.06255 * 179.97438 * 18 17 16 20 20 C 1.70966 * 90.34098 * 0.27534 * 19 18 17 21 21 N 1.39002 * 124.94722 * 179.87547 * 20 19 18 22 22 C 1.34772 * 119.99833 * 359.96195 * 21 20 19 23 23 O 1.21290 * 120.00138 * 359.97438 * 22 21 20 24 24 C 1.50700 * 120.00095 * 179.97438 * 22 21 20 25 25 C 1.53004 * 109.46963 * 59.99607 * 24 22 21 26 26 C 1.53002 * 109.47054 * 179.97438 * 24 22 21 27 27 N 1.29631 * 110.11068 * 359.83746 * 20 19 18 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 31 31 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 32 32 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 33 33 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 34 34 H 0.97001 * 120.00176 * 95.00254 * 13 3 2 35 35 H 1.08995 * 109.47428 * 300.00429 * 16 14 13 36 36 H 1.09008 * 109.47339 * 60.00017 * 16 14 13 37 37 H 1.07998 * 125.96851 * 0.03380 * 18 17 16 38 38 H 0.96999 * 120.00466 * 179.97438 * 21 20 19 39 39 H 1.08998 * 109.47368 * 299.99788 * 24 22 21 40 40 H 1.08994 * 109.46814 * 299.99855 * 25 24 22 41 41 H 1.08999 * 109.47297 * 60.00308 * 25 24 22 42 42 H 1.08998 * 109.46851 * 179.97438 * 25 24 22 43 43 H 1.09006 * 109.47085 * 60.00596 * 26 24 22 44 44 H 1.09009 * 109.46700 * 180.02562 * 26 24 22 45 45 H 1.08999 * 109.47506 * 299.99876 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5987 1.5463 -0.1942 11 1 6.4971 -0.5175 -1.4628 12 1 6.3990 1.6166 -2.6101 13 7 1.6524 2.0975 1.2517 14 6 0.4351 2.6644 1.3669 15 8 -0.3396 2.6319 0.4343 16 6 0.0366 3.3387 2.6543 17 6 -1.3609 3.8871 2.5225 18 6 -2.3419 3.5728 3.3708 19 16 -3.7983 4.4225 2.8605 20 6 -2.9478 5.1134 1.5482 21 7 -3.4977 5.9799 0.6107 22 6 -4.7954 6.3326 0.6987 23 8 -5.4837 5.8934 1.5957 24 6 -5.3915 7.2725 -0.3173 25 6 -5.2690 6.6587 -1.7134 26 6 -6.8679 7.5064 0.0089 27 7 -1.7152 4.7120 1.5551 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 1.8934 -0.5137 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 3.8293 -0.0604 -2.9502 34 1 2.2719 2.1232 1.9977 35 1 0.0680 2.6148 3.4685 36 1 0.7280 4.1543 2.8665 37 1 -2.2574 2.9137 4.2221 38 1 -2.9474 6.3308 -0.1070 39 1 -4.8581 8.2227 -0.2901 40 1 -4.2173 6.4918 -1.9459 41 1 -5.8025 5.7086 -1.7407 42 1 -5.7005 7.3384 -2.4482 43 1 -6.9555 7.9436 1.0035 44 1 -7.2991 8.1860 -0.7264 45 1 -7.4011 6.5562 -0.0186 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183823868.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:58:10 Heat of formation + Delta-G solvation = -60.864707 kcal Electronic energy + Delta-G solvation = -26929.568060 eV Core-core repulsion = 23072.771854 eV Total energy + Delta-G solvation = -3856.796206 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.75636 -41.02601 -39.93487 -36.88981 -36.15666 -35.62336 -34.24626 -33.12576 -32.04003 -29.48116 -28.38158 -28.06100 -26.32885 -25.02010 -23.93101 -22.35947 -22.04485 -21.08555 -20.35592 -19.34853 -18.73099 -18.14814 -17.72267 -17.39620 -17.09381 -16.88969 -16.25343 -16.09389 -15.80186 -15.51544 -15.04271 -14.76865 -14.57553 -14.40672 -14.08609 -13.95631 -13.75938 -13.52423 -13.37276 -13.17169 -13.01961 -12.91456 -12.82384 -12.66922 -12.36787 -12.14399 -12.13530 -12.08148 -12.01202 -11.88970 -11.57258 -11.02702 -10.99579 -10.68647 -10.58055 -10.43353 -10.13623 -9.52864 -9.24289 -8.14504 -6.31447 -0.24348 0.18314 0.88510 1.16081 1.44108 1.45291 1.56504 1.57199 1.94760 2.01828 2.39774 2.85212 3.15057 3.33069 3.52014 3.89920 3.94600 4.13558 4.26423 4.36226 4.43609 4.49344 4.57339 4.58878 4.71326 4.73497 4.77728 4.80185 4.81547 4.92057 5.02754 5.07950 5.19115 5.25576 5.27448 5.34196 5.45964 5.58820 5.69437 5.83032 5.84992 5.99416 6.20438 6.66716 6.78460 6.87447 7.11760 7.36663 7.73559 8.91063 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017220 B = 0.002477 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.590306 B =11302.496621 C =12084.661120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.119 4.119 3 C 0.281 3.719 4 H -0.008 1.008 5 C -0.544 4.544 6 H 0.072 0.928 7 C 0.013 3.987 8 N -0.917 5.917 9 Si 0.970 3.030 10 H -0.260 1.260 11 H -0.279 1.279 12 H -0.285 1.285 13 N -0.709 5.709 14 C 0.500 3.500 15 O -0.574 6.574 16 C -0.060 4.060 17 C 0.091 3.909 18 C -0.303 4.303 19 S 0.232 5.768 20 C 0.221 3.779 21 N -0.619 5.619 22 C 0.511 3.489 23 O -0.534 6.534 24 C -0.096 4.096 25 C -0.150 4.150 26 C -0.133 4.133 27 N -0.512 5.512 28 H 0.043 0.957 29 H 0.019 0.981 30 H 0.044 0.956 31 H 0.043 0.957 32 H 0.068 0.932 33 H 0.263 0.737 34 H 0.404 0.596 35 H 0.143 0.857 36 H 0.124 0.876 37 H 0.207 0.793 38 H 0.430 0.570 39 H 0.134 0.866 40 H 0.062 0.938 41 H 0.051 0.949 42 H 0.098 0.902 43 H 0.057 0.943 44 H 0.092 0.908 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.091 13.832 9.597 23.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.158 4.158 3 C 0.177 3.823 4 H 0.010 0.990 5 C -0.582 4.582 6 H 0.090 0.910 7 C -0.187 4.187 8 N -0.556 5.556 9 Si 0.795 3.205 10 H -0.183 1.183 11 H -0.205 1.205 12 H -0.212 1.212 13 N -0.359 5.359 14 C 0.286 3.714 15 O -0.454 6.454 16 C -0.102 4.102 17 C -0.041 4.041 18 C -0.443 4.443 19 S 0.481 5.519 20 C -0.146 4.146 21 N -0.270 5.270 22 C 0.300 3.700 23 O -0.409 6.409 24 C -0.117 4.117 25 C -0.207 4.207 26 C -0.190 4.190 27 N -0.235 5.235 28 H 0.062 0.938 29 H 0.038 0.962 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.239 0.761 35 H 0.161 0.839 36 H 0.142 0.858 37 H 0.224 0.776 38 H 0.271 0.729 39 H 0.152 0.848 40 H 0.081 0.919 41 H 0.070 0.930 42 H 0.117 0.883 43 H 0.076 0.924 44 H 0.111 0.889 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -17.858 13.737 9.272 24.363 hybrid contribution 2.488 -0.484 -0.688 2.627 sum -15.369 13.254 8.584 22.035 Atomic orbital electron populations 1.21640 0.97179 0.98807 1.00037 1.21768 0.93495 0.99366 1.01200 1.18275 0.93438 0.88973 0.81600 0.98998 1.21641 0.91540 1.38482 1.06567 0.90958 1.25791 1.03282 0.94511 0.95105 1.70072 1.36950 1.38646 1.09902 0.85331 0.79228 0.77782 0.78188 1.18329 1.20496 1.21161 1.46213 1.15668 1.56600 1.17469 1.20918 0.81769 0.78553 0.90130 1.90673 1.52421 1.60105 1.42217 1.20357 0.91660 1.01836 0.96349 1.19395 0.97484 0.96361 0.90907 1.27510 0.96868 1.11064 1.08814 1.84538 1.09705 1.38804 1.18808 1.23718 0.93067 0.99488 0.98374 1.43059 1.12142 1.43672 1.28080 1.22082 0.79330 0.81725 0.86893 1.90625 1.59437 1.54819 1.36069 1.21396 0.99078 0.98245 0.92976 1.21893 1.03021 1.01764 0.94053 1.21675 0.92126 1.02568 1.02675 1.66037 1.14714 1.16749 1.25983 0.93841 0.96192 0.93658 0.93865 0.91312 0.92732 0.76132 0.83923 0.85847 0.77638 0.72943 0.84846 0.91859 0.93029 0.88328 0.92357 0.88930 0.93104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.54 8.51 71.98 0.61 -4.93 16 2 C -0.12 -5.97 5.45 30.60 0.17 -5.80 16 3 C 0.28 14.55 2.24 44.25 0.10 14.65 16 4 H -0.01 -0.49 7.58 -2.39 -0.02 -0.51 16 5 C -0.54 -28.91 8.73 25.60 0.22 -28.69 16 6 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 7 C 0.01 0.69 5.29 84.66 0.45 1.14 16 8 N -0.92 -53.16 11.29 21.45 0.24 -52.92 16 9 Si 0.97 42.34 29.54 68.60 2.03 44.36 16 10 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 11 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 12 H -0.29 -12.48 7.11 99.48 0.71 -11.78 16 13 N -0.71 -29.03 5.02 -446.11 -2.24 -31.27 16 14 C 0.50 19.80 6.37 87.66 0.56 20.36 16 15 O -0.57 -28.14 12.58 -3.04 -0.04 -28.18 16 16 C -0.06 -1.65 6.19 29.10 0.18 -1.47 16 17 C 0.09 2.78 5.63 41.45 0.23 3.01 16 18 C -0.30 -7.60 11.05 66.73 0.74 -6.86 16 19 S 0.23 6.10 20.22 -56.49 -1.14 4.96 16 20 C 0.22 6.63 8.19 179.20 1.47 8.10 16 21 N -0.62 -14.48 5.30 -313.64 -1.66 -16.14 16 22 C 0.51 10.56 7.12 87.66 0.62 11.18 16 23 O -0.53 -13.96 13.45 -3.06 -0.04 -14.00 16 24 C -0.10 -1.13 3.26 -11.54 -0.04 -1.17 16 25 C -0.15 -1.61 9.09 71.98 0.65 -0.96 16 26 C -0.13 -1.50 8.48 71.98 0.61 -0.89 16 27 N -0.51 -17.71 9.72 -189.59 -1.84 -19.55 16 28 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.02 0.99 7.85 -2.39 -0.02 0.98 16 30 H 0.04 2.02 5.64 -2.38 -0.01 2.00 16 31 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.07 3.86 5.95 -2.39 -0.01 3.85 16 33 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 34 H 0.40 13.63 8.54 -92.71 -0.79 12.84 16 35 H 0.14 2.75 8.03 -2.39 -0.02 2.73 16 36 H 0.12 2.89 8.14 -2.38 -0.02 2.87 16 37 H 0.21 3.59 8.06 -2.91 -0.02 3.57 16 38 H 0.43 8.44 8.24 -92.71 -0.76 7.68 16 39 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.06 0.71 7.56 -2.39 -0.02 0.70 16 41 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 43 H 0.06 0.75 8.10 -2.38 -0.02 0.73 16 44 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16 45 H 0.05 0.73 8.10 -2.39 -0.02 0.71 16 Total: -1.00 -77.54 380.73 1.35 -76.19 By element: Atomic # 1 Polarization: 29.40 SS G_CDS: -0.53 Total: 28.87 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: 6.58 Total: 7.68 kcal Atomic # 7 Polarization: -114.38 SS G_CDS: -5.50 Total: -119.89 kcal Atomic # 8 Polarization: -42.10 SS G_CDS: -0.08 Total: -42.18 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.36 kcal Atomic # 16 Polarization: 6.10 SS G_CDS: -1.14 Total: 4.96 kcal Total: -77.54 1.35 -76.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183823868.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.327 kcal (2) G-P(sol) polarization free energy of solvation -77.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds