Wall clock time and date at job start Wed Apr 1 2020 00:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.46855 * 2 1 4 4 C 1.52995 * 109.47310 * 120.00426 * 2 1 3 5 5 H 1.08999 * 109.47240 * 59.13950 * 4 2 1 6 6 N 1.46500 * 109.47246 * 179.13842 * 4 2 1 7 7 C 1.34780 * 120.00351 * 205.00346 * 6 4 2 8 8 O 1.21596 * 119.99634 * 359.97438 * 7 6 4 9 9 N 1.34771 * 120.00164 * 180.02562 * 7 6 4 10 10 C 1.40131 * 120.00125 * 174.85586 * 9 7 6 11 11 C 1.38699 * 120.07572 * 336.67593 * 10 9 7 12 12 C 1.38197 * 120.02142 * 179.76658 * 11 10 9 13 13 C 1.38546 * 120.17547 * 0.50921 * 12 11 10 14 14 F 1.35102 * 119.92462 * 179.76905 * 13 12 11 15 15 C 1.38343 * 120.15012 * 359.73694 * 13 12 11 16 16 C 1.38744 * 119.97675 * 0.02562 * 15 13 12 17 17 O 1.35776 * 120.08555 * 179.97438 * 16 15 13 18 18 C 1.34807 * 116.99989 * 5.61711 * 17 16 15 19 19 H 1.08001 * 120.00238 * 5.08330 * 18 17 16 20 20 C 1.38644 * 119.99837 * 185.08293 * 18 17 16 21 21 N 1.31574 * 119.99690 * 180.02562 * 20 18 17 22 22 Si 1.86792 * 120.00062 * 359.97438 * 20 18 17 23 23 H 1.48507 * 109.46909 * 89.99932 * 22 20 18 24 24 H 1.48499 * 109.47211 * 209.99888 * 22 20 18 25 25 H 1.48502 * 109.47528 * 330.00108 * 22 20 18 26 26 C 1.50699 * 109.47195 * 299.13862 * 4 2 1 27 27 N 1.34772 * 120.00268 * 85.76165 * 26 4 2 28 28 O 1.21285 * 119.99526 * 266.04239 * 26 4 2 29 29 H 1.09000 * 109.47362 * 305.38848 * 1 2 3 30 30 H 1.08998 * 109.47777 * 65.39672 * 1 2 3 31 31 H 1.09009 * 109.47209 * 185.39449 * 1 2 3 32 32 H 1.09006 * 109.47144 * 240.00410 * 2 1 3 33 33 H 1.09003 * 109.46790 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.47754 * 300.00241 * 3 2 1 35 35 H 1.08997 * 109.47104 * 60.00488 * 3 2 1 36 36 H 0.97008 * 119.99814 * 24.99294 * 6 4 2 37 37 H 0.97007 * 120.00030 * 354.85156 * 9 7 6 38 38 H 1.07998 * 119.98546 * 0.02562 * 11 10 9 39 39 H 1.07997 * 119.90927 * 180.22606 * 12 11 10 40 40 H 1.08001 * 120.01381 * 180.02562 * 15 13 12 41 41 H 0.97005 * 119.99727 * 180.02562 * 21 20 18 42 42 H 0.96998 * 119.99860 * 175.28620 * 27 26 4 43 43 H 0.96997 * 119.99961 * 355.29734 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.6642 -1.7444 1.2568 6 7 3.5049 -0.7393 1.2388 7 6 4.1718 -1.7004 1.9082 8 8 3.5576 -2.5522 2.5211 9 7 5.5194 -1.7166 1.8990 10 6 6.2142 -2.6490 2.6810 11 6 5.6080 -3.2116 3.7945 12 6 6.2925 -4.1347 4.5621 13 6 7.5887 -4.4931 4.2289 14 9 8.2548 -5.3925 4.9856 15 6 8.2021 -3.9327 3.1228 16 6 7.5190 -3.0090 2.3449 17 8 8.1191 -2.4572 1.2592 18 6 9.3345 -2.9338 0.9234 19 1 9.7516 -3.7744 1.4581 20 6 10.0492 -2.3450 -0.1084 21 7 11.2353 -2.8106 -0.4365 22 14 9.3276 -0.8917 -1.0338 23 1 9.7324 0.3711 -0.3653 24 1 9.8305 -0.8953 -2.4310 25 1 7.8462 -0.9952 -1.0407 26 6 1.5552 0.0012 2.4796 27 7 0.3396 -0.2782 2.9901 28 8 2.2570 0.8378 3.0074 29 1 -0.3634 0.5951 0.8378 30 1 -0.3634 0.4278 -0.9343 31 1 -0.3634 -1.0232 0.0966 32 1 1.8933 -0.5138 -0.8901 33 1 3.1299 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 3.9948 -0.0596 0.7500 37 1 6.0084 -1.0828 1.3511 38 1 4.5992 -2.9313 4.0592 39 1 5.8174 -4.5743 5.4266 40 1 9.2124 -4.2140 2.8649 41 1 11.7355 -2.3983 -1.1582 42 1 0.0552 0.1360 3.8198 43 1 -0.2507 -0.8936 2.5279 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186631566.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:37 Heat of formation + Delta-G solvation = -135.267255 kcal Electronic energy + Delta-G solvation = -29796.128210 eV Core-core repulsion = 25369.892491 eV Total energy + Delta-G solvation = -4426.235719 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -49.84638 -42.10815 -41.15006 -40.15812 -38.23771 -37.22136 -35.69146 -34.85067 -34.47087 -34.05166 -31.23220 -30.20969 -28.22901 -27.79334 -27.26273 -24.27942 -23.37412 -22.94245 -21.96719 -20.82267 -20.16575 -19.88806 -19.45109 -18.76659 -17.94046 -17.80145 -17.33505 -16.97452 -16.68458 -16.58231 -16.20634 -16.17191 -15.86977 -15.67520 -15.43918 -15.24735 -15.16353 -14.93522 -14.41220 -14.25715 -14.14387 -13.86396 -13.59996 -13.49164 -13.18696 -12.98586 -12.65602 -12.44345 -12.17339 -12.11070 -12.06427 -11.86769 -11.66699 -11.47800 -11.32938 -11.08614 -10.92804 -10.59643 -10.18101 -9.62427 -8.76998 -8.51565 -6.25469 0.15448 0.38864 1.31406 1.35536 1.38854 1.51965 1.67133 1.89287 2.26754 2.57822 2.66892 2.80899 2.98697 3.07162 3.37444 3.61965 3.83212 3.88700 3.95220 4.12679 4.14766 4.26327 4.40771 4.51269 4.59578 4.78514 4.85578 4.90446 5.00184 5.05725 5.12563 5.15910 5.19677 5.32316 5.35469 5.41117 5.43423 5.56942 5.78954 5.83692 5.91211 6.07428 6.44185 6.79247 6.80244 7.29931 7.34309 7.44019 8.59473 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010390 B = 0.003793 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.275217 B = 7379.379662 C = 9673.031194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.092 4.092 3 C -0.155 4.155 4 C 0.147 3.853 5 H 0.118 0.882 6 N -0.713 5.713 7 C 0.706 3.294 8 O -0.601 6.601 9 N -0.665 5.665 10 C 0.096 3.904 11 C -0.066 4.066 12 C -0.188 4.188 13 C 0.114 3.886 14 F -0.146 7.146 15 C -0.251 4.251 16 C 0.136 3.864 17 O -0.222 6.222 18 C -0.401 4.401 19 H 0.079 0.921 20 C 0.013 3.987 21 N -0.920 5.920 22 Si 0.971 3.029 23 H -0.265 1.265 24 H -0.272 1.272 25 H -0.246 1.246 26 C 0.508 3.492 27 N -0.834 5.834 28 O -0.580 6.580 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.104 0.896 33 H 0.051 0.949 34 H 0.079 0.921 35 H 0.045 0.955 36 H 0.411 0.589 37 H 0.415 0.585 38 H 0.163 0.837 39 H 0.160 0.840 40 H 0.128 0.872 41 H 0.286 0.714 42 H 0.406 0.594 43 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.309 7.202 0.068 26.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.111 4.111 3 C -0.212 4.212 4 C 0.037 3.963 5 H 0.136 0.864 6 N -0.368 5.368 7 C 0.407 3.593 8 O -0.481 6.481 9 N -0.311 5.311 10 C 0.000 4.000 11 C -0.087 4.087 12 C -0.208 4.208 13 C 0.094 3.906 14 F -0.125 7.125 15 C -0.272 4.272 16 C 0.083 3.917 17 O -0.128 6.128 18 C -0.477 4.477 19 H 0.096 0.904 20 C -0.186 4.186 21 N -0.559 5.559 22 Si 0.792 3.208 23 H -0.190 1.190 24 H -0.197 1.197 25 H -0.169 1.169 26 C 0.292 3.708 27 N -0.399 5.399 28 O -0.459 6.459 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.122 0.878 33 H 0.070 0.930 34 H 0.098 0.902 35 H 0.064 0.936 36 H 0.249 0.751 37 H 0.251 0.749 38 H 0.180 0.820 39 H 0.177 0.823 40 H 0.146 0.854 41 H 0.096 0.904 42 H 0.238 0.762 43 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -25.193 7.132 0.515 26.188 hybrid contribution 1.136 0.419 -0.383 1.270 sum -24.058 7.551 0.131 25.215 Atomic orbital electron populations 1.21981 0.91719 1.03697 1.03736 1.21391 0.98390 0.96255 0.95072 1.21929 1.01073 0.95590 1.02608 1.21092 0.79240 1.01904 0.94020 0.86411 1.44758 1.06527 1.30504 1.55038 1.15928 0.81122 0.82243 0.79974 1.90803 1.67581 1.40845 1.48860 1.42208 1.04900 1.36326 1.47679 1.16850 0.89163 0.98721 0.95271 1.21089 1.00961 0.95683 0.90933 1.20941 0.92729 1.03061 1.04048 1.17488 0.91525 0.90857 0.90776 1.91430 1.80882 1.65454 1.74713 1.20955 1.02647 1.04784 0.98837 1.18670 0.91543 0.93608 0.87830 1.83448 1.32316 1.57479 1.39585 1.20634 0.92046 1.15953 1.19055 0.90354 1.25336 0.94803 1.01302 0.97204 1.69745 1.12447 1.43064 1.30668 0.85223 0.80229 0.77873 0.77513 1.19018 1.19727 1.16925 1.21316 0.81800 0.81796 0.85902 1.43785 1.17236 1.50038 1.28865 1.90732 1.57076 1.35027 1.63106 0.92086 0.90160 0.90227 0.87783 0.93031 0.90180 0.93558 0.75148 0.74857 0.82001 0.82252 0.85410 0.90435 0.76216 0.75179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 8.18 71.98 0.59 -0.37 16 2 C -0.09 -1.04 2.90 -10.80 -0.03 -1.07 16 3 C -0.15 -2.09 8.69 71.98 0.63 -1.46 16 4 C 0.15 2.61 2.20 44.24 0.10 2.71 16 5 H 0.12 1.99 7.58 -2.39 -0.02 1.98 16 6 N -0.71 -16.62 4.63 -461.41 -2.14 -18.76 16 7 C 0.71 22.13 8.35 179.06 1.49 23.62 16 8 O -0.60 -21.02 13.07 -4.02 -0.05 -21.07 16 9 N -0.67 -22.76 5.31 -316.70 -1.68 -24.44 16 10 C 0.10 3.79 6.48 38.22 0.25 4.03 16 11 C -0.07 -2.39 8.74 22.37 0.20 -2.20 16 12 C -0.19 -6.48 10.02 22.33 0.22 -6.26 16 13 C 0.11 4.48 7.29 22.37 0.16 4.65 16 14 F -0.15 -5.58 17.26 44.97 0.78 -4.80 16 15 C -0.25 -11.35 9.11 22.42 0.20 -11.15 16 16 C 0.14 6.15 6.66 22.69 0.15 6.31 16 17 O -0.22 -11.00 7.98 -22.79 -0.18 -11.19 16 18 C -0.40 -22.41 9.90 67.92 0.67 -21.74 16 19 H 0.08 4.70 5.52 -2.91 -0.02 4.69 16 20 C 0.01 0.70 5.49 84.83 0.47 1.17 16 21 N -0.92 -53.14 13.96 21.61 0.30 -52.83 16 22 Si 0.97 41.48 28.62 68.60 1.96 43.44 16 23 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 24 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 25 H -0.25 -9.76 7.11 99.48 0.71 -9.05 16 26 C 0.51 10.48 5.58 87.66 0.49 10.97 16 27 N -0.83 -9.91 7.89 -173.53 -1.37 -11.28 16 28 O -0.58 -17.37 16.76 -3.05 -0.05 -17.42 16 29 H 0.06 0.41 6.67 -2.39 -0.02 0.40 16 30 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.08 0.26 8.14 -2.38 -0.02 0.24 16 32 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16 33 H 0.05 0.77 6.55 -2.39 -0.02 0.75 16 34 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.05 0.80 6.77 -2.39 -0.02 0.78 16 36 H 0.41 8.30 6.94 -92.70 -0.64 7.66 16 37 H 0.42 13.24 8.33 -92.70 -0.77 12.47 16 38 H 0.16 5.71 5.66 -2.91 -0.02 5.69 16 39 H 0.16 4.41 8.06 -2.91 -0.02 4.38 16 40 H 0.13 6.28 5.71 -2.91 -0.02 6.27 16 41 H 0.29 15.14 8.31 -92.70 -0.77 14.37 16 42 H 0.41 4.25 8.93 -92.71 -0.83 3.42 16 43 H 0.42 2.25 8.09 -92.71 -0.75 1.50 16 Total: -1.00 -73.44 362.07 1.30 -72.15 By element: Atomic # 1 Polarization: 38.85 SS G_CDS: -1.86 Total: 36.99 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: 5.59 Total: 9.21 kcal Atomic # 7 Polarization: -102.43 SS G_CDS: -4.89 Total: -107.31 kcal Atomic # 8 Polarization: -49.40 SS G_CDS: -0.29 Total: -49.68 kcal Atomic # 9 Polarization: -5.58 SS G_CDS: 0.78 Total: -4.80 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 1.96 Total: 43.44 kcal Total: -73.44 1.30 -72.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186631566.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.118 kcal (2) G-P(sol) polarization free energy of solvation -73.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds