Wall clock time and date at job start Wed Apr 1 2020 00:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.46891 * 2 1 4 4 H 1.08996 * 109.47234 * 54.99732 * 3 2 1 5 5 C 1.50694 * 109.47014 * 174.99874 * 3 2 1 6 6 H 1.08008 * 119.99951 * 119.99430 * 5 3 2 7 7 C 1.37878 * 120.00435 * 299.99407 * 5 3 2 8 8 N 1.31513 * 119.99470 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00443 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47113 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46883 * 120.00150 * 9 7 5 12 12 H 1.48505 * 109.47102 * 240.00517 * 9 7 5 13 13 N 1.46506 * 109.46686 * 295.00061 * 3 2 1 14 14 C 1.34772 * 120.00072 * 85.00185 * 13 3 2 15 15 O 1.21277 * 120.00287 * 359.97438 * 14 13 3 16 16 C 1.50701 * 119.99675 * 179.97438 * 14 13 3 17 17 C 1.53000 * 109.47026 * 179.97438 * 16 14 13 18 18 C 1.50701 * 109.47026 * 180.02562 * 17 16 14 19 19 C 1.38256 * 120.74016 * 269.97716 * 18 17 16 20 20 C 1.50702 * 120.36521 * 0.04831 * 19 18 17 21 21 N 1.32419 * 119.27318 * 180.02562 * 19 18 17 22 22 C 1.32551 * 120.88125 * 0.02562 * 21 19 18 23 23 S 1.76202 * 119.19698 * 179.97438 * 22 21 19 24 24 C 1.81003 * 99.99981 * 179.97438 * 23 22 21 25 25 N 1.32530 * 121.61277 * 359.71841 * 22 21 19 26 26 C 1.32747 * 120.63440 * 0.56517 * 25 22 21 27 27 O 1.35512 * 120.46041 * 179.71815 * 26 25 22 28 28 H 1.09002 * 109.46826 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47444 * 299.99993 * 1 2 3 30 30 H 1.08996 * 109.46983 * 60.00328 * 1 2 3 31 31 H 1.08996 * 109.47444 * 240.00007 * 2 1 3 32 32 H 1.09004 * 109.47047 * 119.99401 * 2 1 3 33 33 H 0.97003 * 120.00028 * 180.02562 * 8 7 5 34 34 H 0.97005 * 119.99412 * 264.99960 * 13 3 2 35 35 H 1.09006 * 109.47473 * 59.99890 * 16 14 13 36 36 H 1.08994 * 109.47417 * 300.00185 * 16 14 13 37 37 H 1.08997 * 109.46726 * 60.00401 * 17 16 14 38 38 H 1.08995 * 109.47553 * 299.99946 * 17 16 14 39 39 H 1.08999 * 109.46919 * 90.00037 * 20 19 18 40 40 H 1.09001 * 109.46797 * 209.99423 * 20 19 18 41 41 H 1.08994 * 109.46792 * 329.99502 * 20 19 18 42 42 H 1.08996 * 109.47067 * 300.00154 * 24 23 22 43 43 H 1.08999 * 109.46822 * 60.00796 * 24 23 22 44 44 H 1.09001 * 109.46917 * 180.02562 * 24 23 22 45 45 H 0.96700 * 114.00230 * 269.72677 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8417 5 6 3.5418 1.4444 0.1239 6 1 4.1472 1.8890 -0.6524 7 6 4.1433 0.8787 1.2280 8 7 3.4062 0.3370 2.1729 9 14 6.0049 0.8816 1.3819 10 1 6.5987 1.5476 0.1948 11 1 6.3988 1.6171 2.6103 12 1 6.4971 -0.5172 1.4631 13 7 1.6523 2.0975 -1.2519 14 6 0.4350 2.6643 -1.3670 15 8 -0.3397 2.6319 -0.4345 16 6 0.0366 3.3385 -2.6546 17 6 -1.3827 3.8940 -2.5214 18 6 -1.7814 4.5676 -3.8091 19 6 -1.5287 5.9118 -4.0113 20 6 -0.8468 6.7278 -2.9435 21 7 -1.8919 6.4742 -5.1538 22 6 -2.4923 5.7663 -6.1000 23 16 -2.9572 6.5599 -7.6029 24 6 -3.7015 5.1621 -8.4793 25 7 -2.7471 4.4749 -5.9453 26 6 -2.4147 3.8496 -4.8225 27 8 -2.6820 2.5304 -4.6659 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 3.8293 -0.0608 2.9500 34 1 2.2719 2.1231 -1.9979 35 1 0.0680 2.6143 -3.4688 36 1 0.7279 4.1539 -2.8669 37 1 -1.4145 4.6181 -1.7072 38 1 -2.0739 3.0783 -2.3094 39 1 0.2324 6.6913 -3.0921 40 1 -1.1871 7.7615 -3.0035 41 1 -1.0925 6.3206 -1.9628 42 1 -2.9582 4.3750 -8.6056 43 1 -4.5430 4.7782 -7.9026 44 1 -4.0513 5.4914 -9.4577 45 1 -3.5460 2.3482 -4.2716 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273821164.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:58:16 Heat of formation + Delta-G solvation = -48.592523 kcal Electronic energy + Delta-G solvation = -27044.406066 eV Core-core repulsion = 23188.142022 eV Total energy + Delta-G solvation = -3856.264045 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.50315 -39.08422 -37.94195 -35.66742 -34.89086 -33.39482 -32.38557 -31.20494 -30.36155 -29.53525 -28.47657 -27.09417 -25.53292 -23.23502 -23.05649 -22.22289 -20.11940 -19.35978 -19.29259 -18.44656 -17.54508 -17.14734 -16.02123 -15.90494 -15.38517 -15.16718 -15.05477 -14.57676 -14.36011 -14.11601 -13.95750 -13.86973 -13.46977 -13.10353 -12.98780 -12.94861 -12.73755 -12.69260 -12.25359 -12.13039 -11.85343 -11.50356 -11.31157 -11.23715 -10.98079 -10.96336 -10.83805 -10.63888 -10.57279 -10.32137 -10.18178 -9.94199 -9.64024 -9.60593 -9.06000 -8.97236 -8.51469 -8.06244 -7.82351 -6.14076 -4.23283 0.41783 0.66032 0.88653 1.75522 3.03976 3.22033 3.30101 3.30979 3.32661 3.40748 3.89875 4.05893 4.30705 4.35058 4.57858 4.73347 4.80213 4.85310 4.98350 5.11101 5.17274 5.22422 5.31926 5.46049 5.47023 5.51333 5.63281 5.80982 5.87995 6.04949 6.21832 6.38185 6.44912 6.57211 6.65102 7.03350 7.06822 7.18357 7.35978 7.45443 7.55231 7.61039 7.72381 7.89149 8.17281 8.67027 8.76730 9.13583 9.44423 10.91220 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021105 B = 0.002250 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.385266 B =12441.725982 C =12909.196148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.049 0.951 5 C -0.533 4.533 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.709 5.709 14 C 0.502 3.498 15 O -0.551 6.551 16 C -0.136 4.136 17 C -0.048 4.048 18 C -0.203 4.203 19 C 0.205 3.795 20 C -0.113 4.113 21 N -0.506 5.506 22 C 0.313 3.687 23 S 0.003 5.997 24 C -0.144 4.144 25 N -0.549 5.549 26 C 0.378 3.622 27 O -0.468 6.468 28 H 0.021 0.979 29 H 0.049 0.951 30 H 0.039 0.961 31 H 0.030 0.970 32 H 0.098 0.902 33 H 0.264 0.736 34 H 0.388 0.612 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.085 0.915 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.106 0.894 45 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.496 9.945 -17.054 23.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.067 0.933 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.356 5.356 14 C 0.287 3.713 15 O -0.431 6.431 16 C -0.176 4.176 17 C -0.087 4.087 18 C -0.212 4.212 19 C 0.058 3.942 20 C -0.170 4.170 21 N -0.225 5.225 22 C -0.063 4.063 23 S 0.236 5.764 24 C -0.313 4.313 25 N -0.278 5.278 26 C 0.188 3.812 27 O -0.275 6.275 28 H 0.040 0.960 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.049 0.951 32 H 0.117 0.883 33 H 0.074 0.926 34 H 0.220 0.780 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.108 0.892 38 H 0.103 0.897 39 H 0.110 0.890 40 H 0.104 0.896 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.109 0.891 44 H 0.124 0.876 45 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -13.634 11.246 -17.679 24.998 hybrid contribution 0.977 -1.985 0.989 2.423 sum -12.657 9.261 -16.690 22.903 Atomic orbital electron populations 1.21830 0.98353 0.97971 1.01193 1.21935 0.92633 0.99878 1.02226 1.18777 0.94154 0.89172 0.81088 0.93324 1.21278 0.90797 1.38886 1.06217 0.92097 1.24889 0.98580 0.94828 0.95425 1.69903 1.35016 1.37689 1.09343 0.86416 0.84928 0.77781 0.78106 1.19765 1.20885 1.20883 1.46515 1.14722 1.55916 1.18496 1.20255 0.82758 0.79381 0.88883 1.90662 1.51404 1.60265 1.40737 1.21640 0.96912 1.01229 0.97868 1.20119 0.96393 1.00478 0.91709 1.21664 1.05151 0.95226 0.99154 1.21623 0.90138 0.90710 0.91749 1.20933 1.00802 0.99933 0.95349 1.68348 1.13765 1.39073 1.01311 1.24640 0.94645 0.88031 0.98982 1.85831 1.71452 1.13756 1.05373 1.23565 1.04851 1.00147 1.02743 1.68235 1.24743 1.09625 1.25238 1.19210 0.90618 0.84092 0.87242 1.84743 1.41320 1.16995 1.84466 0.95953 0.93189 0.94239 0.95115 0.88344 0.92632 0.78011 0.89411 0.89648 0.89223 0.89655 0.88969 0.89632 0.88987 0.89024 0.89137 0.87568 0.73204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 8.51 37.16 0.32 -2.66 16 2 C -0.13 -3.06 5.45 -26.73 -0.15 -3.21 16 3 C 0.27 6.62 2.24 -69.08 -0.15 6.46 16 4 H 0.05 1.38 7.58 -51.93 -0.39 0.99 16 5 C -0.53 -13.85 8.73 -34.44 -0.30 -14.15 16 6 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.65 16 8 N -0.88 -24.42 11.29 55.43 0.63 -23.79 16 9 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16 10 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 13 N -0.71 -14.09 5.02 -54.93 -0.28 -14.36 16 14 C 0.50 9.16 6.40 -10.99 -0.07 9.09 16 15 O -0.55 -11.78 13.12 5.56 0.07 -11.71 16 16 C -0.14 -1.81 5.68 -27.88 -0.16 -1.97 16 17 C -0.05 -0.58 4.08 -27.88 -0.11 -0.69 16 18 C -0.20 -2.34 5.18 -104.18 -0.54 -2.88 16 19 C 0.21 2.37 6.82 -82.33 -0.56 1.81 16 20 C -0.11 -1.01 9.83 36.01 0.35 -0.66 16 21 N -0.51 -6.45 10.33 -9.73 -0.10 -6.56 16 22 C 0.31 3.86 7.85 -90.87 -0.71 3.15 16 23 S 0.00 0.03 22.89 -107.50 -2.46 -2.44 16 24 C -0.14 -0.98 9.62 101.05 0.97 -0.01 16 25 N -0.55 -6.77 9.16 -13.50 -0.12 -6.89 16 26 C 0.38 4.48 7.80 -16.72 -0.13 4.35 16 27 O -0.47 -4.83 12.74 -18.23 -0.23 -5.06 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 1.16 7.85 -51.93 -0.41 0.75 16 30 H 0.04 0.83 5.64 -51.93 -0.29 0.53 16 31 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.10 2.62 5.95 -51.93 -0.31 2.31 16 33 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 34 H 0.39 6.79 8.54 -40.82 -0.35 6.44 16 35 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 36 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.09 1.07 6.02 -51.93 -0.31 0.75 16 38 H 0.08 1.05 7.58 -51.93 -0.39 0.66 16 39 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.09 0.77 6.06 -51.93 -0.31 0.46 16 42 H 0.09 0.70 8.11 -51.92 -0.42 0.28 16 43 H 0.09 0.63 8.11 -51.92 -0.42 0.21 16 44 H 0.11 0.46 8.14 -51.92 -0.42 0.04 16 45 H 0.41 2.26 9.06 45.56 0.41 2.68 16 LS Contribution 382.45 15.07 5.76 5.76 Total: -1.00 -32.26 382.45 -8.79 -41.05 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -5.70 Total: 8.31 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -1.34 Total: 0.28 kcal Atomic # 7 Polarization: -51.72 SS G_CDS: 0.13 Total: -51.60 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: -0.16 Total: -16.76 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Atomic # 16 Polarization: 0.03 SS G_CDS: -2.46 Total: -2.44 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.26 -8.79 -41.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273821164.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.539 kcal (2) G-P(sol) polarization free energy of solvation -32.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds