Wall clock time and date at job start Wed Apr 1 2020 00:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.46891 * 2 1 4 4 H 1.08996 * 109.47234 * 54.99732 * 3 2 1 5 5 C 1.50694 * 109.47014 * 174.99874 * 3 2 1 6 6 H 1.08008 * 119.99951 * 119.99430 * 5 3 2 7 7 C 1.37878 * 120.00435 * 299.99407 * 5 3 2 8 8 N 1.31513 * 119.99470 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00443 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47113 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46883 * 120.00150 * 9 7 5 12 12 H 1.48505 * 109.47102 * 240.00517 * 9 7 5 13 13 N 1.46506 * 109.46686 * 295.00061 * 3 2 1 14 14 C 1.34772 * 120.00072 * 85.00185 * 13 3 2 15 15 O 1.21277 * 120.00287 * 359.97438 * 14 13 3 16 16 C 1.50701 * 119.99675 * 179.97438 * 14 13 3 17 17 C 1.53000 * 109.47026 * 179.97438 * 16 14 13 18 18 C 1.50701 * 109.47026 * 180.02562 * 17 16 14 19 19 C 1.38256 * 120.74016 * 269.97716 * 18 17 16 20 20 C 1.50702 * 120.36521 * 0.04831 * 19 18 17 21 21 N 1.32419 * 119.27318 * 180.02562 * 19 18 17 22 22 C 1.32551 * 120.88125 * 0.02562 * 21 19 18 23 23 S 1.76202 * 119.19698 * 179.97438 * 22 21 19 24 24 C 1.81003 * 99.99981 * 179.97438 * 23 22 21 25 25 N 1.32530 * 121.61277 * 359.71841 * 22 21 19 26 26 C 1.32747 * 120.63440 * 0.56517 * 25 22 21 27 27 O 1.35512 * 120.46041 * 179.71815 * 26 25 22 28 28 H 1.09002 * 109.46826 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47444 * 299.99993 * 1 2 3 30 30 H 1.08996 * 109.46983 * 60.00328 * 1 2 3 31 31 H 1.08996 * 109.47444 * 240.00007 * 2 1 3 32 32 H 1.09004 * 109.47047 * 119.99401 * 2 1 3 33 33 H 0.97003 * 120.00028 * 180.02562 * 8 7 5 34 34 H 0.97005 * 119.99412 * 264.99960 * 13 3 2 35 35 H 1.09006 * 109.47473 * 59.99890 * 16 14 13 36 36 H 1.08994 * 109.47417 * 300.00185 * 16 14 13 37 37 H 1.08997 * 109.46726 * 60.00401 * 17 16 14 38 38 H 1.08995 * 109.47553 * 299.99946 * 17 16 14 39 39 H 1.08999 * 109.46919 * 90.00037 * 20 19 18 40 40 H 1.09001 * 109.46797 * 209.99423 * 20 19 18 41 41 H 1.08994 * 109.46792 * 329.99502 * 20 19 18 42 42 H 1.08996 * 109.47067 * 300.00154 * 24 23 22 43 43 H 1.08999 * 109.46822 * 60.00796 * 24 23 22 44 44 H 1.09001 * 109.46917 * 180.02562 * 24 23 22 45 45 H 0.96700 * 114.00230 * 269.72677 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8417 5 6 3.5418 1.4444 0.1239 6 1 4.1472 1.8890 -0.6524 7 6 4.1433 0.8787 1.2280 8 7 3.4062 0.3370 2.1729 9 14 6.0049 0.8816 1.3819 10 1 6.5987 1.5476 0.1948 11 1 6.3988 1.6171 2.6103 12 1 6.4971 -0.5172 1.4631 13 7 1.6523 2.0975 -1.2519 14 6 0.4350 2.6643 -1.3670 15 8 -0.3397 2.6319 -0.4345 16 6 0.0366 3.3385 -2.6546 17 6 -1.3827 3.8940 -2.5214 18 6 -1.7814 4.5676 -3.8091 19 6 -1.5287 5.9118 -4.0113 20 6 -0.8468 6.7278 -2.9435 21 7 -1.8919 6.4742 -5.1538 22 6 -2.4923 5.7663 -6.1000 23 16 -2.9572 6.5599 -7.6029 24 6 -3.7015 5.1621 -8.4793 25 7 -2.7471 4.4749 -5.9453 26 6 -2.4147 3.8496 -4.8225 27 8 -2.6820 2.5304 -4.6659 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 3.8293 -0.0608 2.9500 34 1 2.2719 2.1231 -1.9979 35 1 0.0680 2.6143 -3.4688 36 1 0.7279 4.1539 -2.8669 37 1 -1.4145 4.6181 -1.7072 38 1 -2.0739 3.0783 -2.3094 39 1 0.2324 6.6913 -3.0921 40 1 -1.1871 7.7615 -3.0035 41 1 -1.0925 6.3206 -1.9628 42 1 -2.9582 4.3750 -8.6056 43 1 -4.5430 4.7782 -7.9026 44 1 -4.0513 5.4914 -9.4577 45 1 -3.5460 2.3482 -4.2716 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273821164.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:58:14 Heat of formation + Delta-G solvation = -72.340972 kcal Electronic energy + Delta-G solvation = -27045.435876 eV Core-core repulsion = 23188.142022 eV Total energy + Delta-G solvation = -3857.293855 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -42.36466 -40.62936 -38.74969 -37.11564 -36.17543 -34.35573 -34.23357 -32.85650 -31.49908 -30.15730 -29.36434 -28.79979 -26.65936 -24.94319 -23.96623 -23.37658 -21.78152 -20.98261 -20.15389 -19.29909 -18.89554 -18.27359 -17.50192 -17.18757 -16.80761 -16.56961 -16.07464 -15.88718 -15.44679 -15.19945 -14.98441 -14.66451 -14.55161 -14.50464 -14.29065 -13.85575 -13.70275 -13.54535 -13.41581 -13.33895 -13.22624 -13.14974 -12.88271 -12.83258 -12.68993 -12.15002 -12.09676 -12.00633 -11.94116 -11.55713 -11.47951 -11.39827 -11.01577 -10.83294 -10.58546 -10.49100 -10.41872 -9.56111 -8.82474 -8.15058 -6.31633 -0.45889 -0.18460 0.12895 1.11866 1.43626 1.45460 1.56490 1.93989 2.22656 2.37503 2.46040 2.73105 3.10882 3.14505 3.46122 3.67438 3.73399 4.04064 4.16326 4.30758 4.31077 4.33692 4.36068 4.52390 4.59961 4.61017 4.69019 4.70713 4.81315 4.85121 4.94524 5.03451 5.08476 5.10631 5.29607 5.36731 5.47193 5.59170 5.67542 5.72050 5.83117 5.96265 6.20347 6.42620 6.69409 6.77622 7.06000 7.35994 7.65551 8.90209 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021105 B = 0.002250 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.385266 B =12441.725982 C =12909.196148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.122 4.122 3 C 0.278 3.722 4 H 0.001 0.999 5 C -0.546 4.546 6 H 0.070 0.930 7 C 0.015 3.985 8 N -0.914 5.914 9 Si 0.967 3.033 10 H -0.262 1.262 11 H -0.284 1.284 12 H -0.280 1.280 13 N -0.710 5.710 14 C 0.501 3.499 15 O -0.584 6.584 16 C -0.121 4.121 17 C -0.039 4.039 18 C -0.207 4.207 19 C 0.202 3.798 20 C -0.112 4.112 21 N -0.526 5.526 22 C 0.299 3.701 23 S 0.001 5.999 24 C -0.136 4.136 25 N -0.559 5.559 26 C 0.376 3.624 27 O -0.475 6.475 28 H 0.042 0.958 29 H 0.027 0.973 30 H 0.047 0.953 31 H 0.037 0.963 32 H 0.069 0.931 33 H 0.264 0.736 34 H 0.401 0.599 35 H 0.098 0.902 36 H 0.107 0.893 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.101 0.899 40 H 0.092 0.908 41 H 0.096 0.904 42 H 0.084 0.916 43 H 0.089 0.911 44 H 0.135 0.865 45 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.255 10.402 -19.010 25.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.161 4.161 3 C 0.175 3.825 4 H 0.019 0.981 5 C -0.584 4.584 6 H 0.088 0.912 7 C -0.185 4.185 8 N -0.553 5.553 9 Si 0.792 3.208 10 H -0.186 1.186 11 H -0.210 1.210 12 H -0.206 1.206 13 N -0.358 5.358 14 C 0.289 3.711 15 O -0.465 6.465 16 C -0.161 4.161 17 C -0.078 4.078 18 C -0.216 4.216 19 C 0.055 3.945 20 C -0.169 4.169 21 N -0.245 5.245 22 C -0.077 4.077 23 S 0.235 5.765 24 C -0.305 4.305 25 N -0.289 5.289 26 C 0.187 3.813 27 O -0.286 6.286 28 H 0.061 0.939 29 H 0.046 0.954 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.236 0.764 35 H 0.117 0.883 36 H 0.125 0.875 37 H 0.108 0.892 38 H 0.099 0.901 39 H 0.120 0.880 40 H 0.111 0.889 41 H 0.115 0.885 42 H 0.103 0.897 43 H 0.108 0.892 44 H 0.153 0.847 45 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges -13.412 11.711 -19.670 26.532 hybrid contribution 0.812 -2.115 1.552 2.746 sum -12.601 9.597 -18.119 24.066 Atomic orbital electron populations 1.21663 0.96757 0.99043 1.00436 1.21791 0.93980 0.99329 1.01038 1.18333 0.93419 0.89122 0.81660 0.98128 1.21625 0.91686 1.38618 1.06475 0.91231 1.25741 1.03068 0.94518 0.95164 1.70050 1.36858 1.38498 1.09876 0.85373 0.79493 0.77741 0.78174 1.18568 1.20999 1.20625 1.46315 1.15903 1.56205 1.17424 1.21052 0.81550 0.78429 0.90113 1.90653 1.52165 1.61217 1.42481 1.21562 0.98145 1.01622 0.94775 1.19987 0.95373 1.00323 0.92088 1.21526 1.05998 0.95294 0.98798 1.21996 0.89637 0.90970 0.91901 1.21012 1.01110 1.00051 0.94744 1.68425 1.14696 1.39464 1.01917 1.25155 0.94383 0.88288 0.99837 1.85816 1.71225 1.15043 1.04437 1.23637 1.04314 0.98887 1.03633 1.68297 1.25360 1.09734 1.25502 1.19369 0.90273 0.84476 0.87216 1.84694 1.42927 1.16223 1.84715 0.93886 0.95395 0.93426 0.94418 0.91218 0.92677 0.76423 0.88337 0.87482 0.89188 0.90114 0.88029 0.88902 0.88507 0.89651 0.89194 0.84715 0.70996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.31 8.51 71.98 0.61 -4.70 16 2 C -0.12 -5.93 5.45 30.60 0.17 -5.76 16 3 C 0.28 13.86 2.24 44.24 0.10 13.96 16 4 H 0.00 0.05 7.58 -2.39 -0.02 0.03 16 5 C -0.55 -28.36 8.73 25.60 0.22 -28.13 16 6 H 0.07 3.41 7.74 -2.91 -0.02 3.38 16 7 C 0.02 0.80 5.29 84.66 0.45 1.25 16 8 N -0.91 -51.71 11.29 21.45 0.24 -51.47 16 9 Si 0.97 41.71 29.54 68.60 2.03 43.73 16 10 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 11 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 12 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 13 N -0.71 -27.78 5.02 -446.10 -2.24 -30.02 16 14 C 0.50 17.87 6.40 87.66 0.56 18.43 16 15 O -0.58 -25.05 13.12 -3.02 -0.04 -25.09 16 16 C -0.12 -2.98 5.68 29.85 0.17 -2.81 16 17 C -0.04 -0.88 4.08 29.85 0.12 -0.75 16 18 C -0.21 -4.48 5.18 -19.58 -0.10 -4.58 16 19 C 0.20 4.39 6.82 42.48 0.29 4.67 16 20 C -0.11 -1.83 9.83 71.24 0.70 -1.13 16 21 N -0.53 -12.85 10.33 -184.70 -1.91 -14.76 16 22 C 0.30 7.06 7.85 180.43 1.42 8.47 16 23 S 0.00 0.03 22.89 -56.49 -1.29 -1.27 16 24 C -0.14 -1.60 9.62 113.37 1.09 -0.51 16 25 N -0.56 -13.10 9.16 -309.33 -2.83 -15.94 16 26 C 0.38 8.39 7.80 84.84 0.66 9.06 16 27 O -0.47 -9.04 12.74 -88.14 -1.12 -10.16 16 28 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.03 1.31 7.85 -2.39 -0.02 1.29 16 30 H 0.05 1.97 5.64 -2.39 -0.01 1.96 16 31 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.07 3.81 5.95 -2.38 -0.01 3.79 16 33 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 34 H 0.40 13.47 8.54 -92.70 -0.79 12.68 16 35 H 0.10 2.30 8.14 -2.38 -0.02 2.28 16 36 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.09 2.03 6.02 -2.39 -0.01 2.01 16 38 H 0.08 1.90 7.58 -2.39 -0.02 1.88 16 39 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.10 1.48 6.06 -2.39 -0.01 1.47 16 42 H 0.08 1.16 8.11 -2.40 -0.02 1.14 16 43 H 0.09 1.11 8.11 -2.40 -0.02 1.09 16 44 H 0.13 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.43 4.09 9.06 -74.06 -0.67 3.42 16 Total: -1.00 -70.17 382.45 -1.13 -71.30 By element: Atomic # 1 Polarization: 26.63 SS G_CDS: -0.42 Total: 26.21 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: 6.46 Total: 7.45 kcal Atomic # 7 Polarization: -105.45 SS G_CDS: -6.74 Total: -112.19 kcal Atomic # 8 Polarization: -34.09 SS G_CDS: -1.16 Total: -35.25 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.73 kcal Atomic # 16 Polarization: 0.03 SS G_CDS: -1.29 Total: -1.27 kcal Total: -70.17 -1.13 -71.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273821164.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.036 kcal (2) G-P(sol) polarization free energy of solvation -70.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds