Wall clock time and date at job start Wed Apr 1 2020 00:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46913 * 2 1 4 4 H 1.09000 * 109.47170 * 54.99838 * 3 2 1 5 5 C 1.50696 * 109.47121 * 174.99866 * 3 2 1 6 6 H 1.07998 * 119.99992 * 120.00180 * 5 3 2 7 7 C 1.37876 * 119.99966 * 299.99686 * 5 3 2 8 8 N 1.31517 * 120.00248 * 179.97438 * 7 5 3 9 9 Si 1.86804 * 120.00102 * 0.02562 * 7 5 3 10 10 H 1.48509 * 109.46832 * 89.99910 * 9 7 5 11 11 H 1.48495 * 109.47200 * 209.99537 * 9 7 5 12 12 H 1.48497 * 109.47120 * 330.00146 * 9 7 5 13 13 N 1.46498 * 109.46908 * 294.99712 * 3 2 1 14 14 C 1.34785 * 119.99885 * 85.00320 * 13 3 2 15 15 O 1.21606 * 119.99906 * 359.97438 * 14 13 3 16 16 C 1.47373 * 119.99833 * 179.97438 * 14 13 3 17 17 C 1.39855 * 120.09116 * 359.97438 * 16 14 13 18 18 C 1.36530 * 120.07800 * 180.02562 * 17 16 14 19 19 N 1.48024 * 119.86564 * 179.97438 * 18 17 16 20 20 O 1.21795 * 120.00076 * 0.02562 * 19 18 17 21 21 O 1.21802 * 119.99984 * 180.02562 * 19 18 17 22 22 C 1.39303 * 120.26962 * 0.02562 * 18 17 16 23 23 N 1.39053 * 119.90572 * 180.02562 * 22 18 17 24 24 C 1.46899 * 110.99902 * 119.97625 * 23 22 18 25 25 C 1.46903 * 110.99703 * 243.92378 * 23 22 18 26 26 C 1.39078 * 120.18001 * 359.97438 * 22 18 17 27 27 C 1.38000 * 119.92176 * 0.02562 * 26 22 18 28 28 F 1.35097 * 120.13337 * 179.97438 * 27 26 22 29 29 H 1.08997 * 109.47669 * 299.99907 * 1 2 3 30 30 H 1.08999 * 109.46881 * 60.00481 * 1 2 3 31 31 H 1.09007 * 109.46817 * 179.97438 * 1 2 3 32 32 H 1.08989 * 109.47471 * 239.99858 * 2 1 3 33 33 H 1.08999 * 109.46881 * 119.99519 * 2 1 3 34 34 H 0.96997 * 119.99915 * 179.97438 * 8 7 5 35 35 H 0.97003 * 120.00077 * 264.99657 * 13 3 2 36 36 H 1.08001 * 119.96254 * 359.74086 * 17 16 14 37 37 H 1.09002 * 109.47352 * 59.99767 * 24 23 22 38 38 H 1.09009 * 109.46826 * 179.97438 * 24 23 22 39 39 H 1.08997 * 109.47096 * 299.99088 * 24 23 22 40 40 H 1.09005 * 109.47346 * 59.99924 * 25 23 22 41 41 H 1.08995 * 109.47291 * 180.02562 * 25 23 22 42 42 H 1.09005 * 109.47067 * 300.00829 * 25 23 22 43 43 H 1.08000 * 120.03703 * 180.02562 * 26 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5418 1.4444 0.1239 6 1 4.1471 1.8890 -0.6522 7 6 4.1432 0.8786 1.2280 8 7 5.4539 0.8797 1.3360 9 14 3.0962 0.1090 2.5702 10 1 2.8755 -1.3272 2.2634 11 1 3.7935 0.2349 3.8752 12 1 1.7875 0.8073 2.6387 13 7 1.6524 2.0974 -1.2518 14 6 0.4350 2.6643 -1.3670 15 8 -0.3418 2.6318 -0.4320 16 6 0.0454 3.3236 -2.6261 17 6 0.9375 3.3626 -3.7025 18 6 0.5764 3.9739 -4.8687 19 7 1.5245 4.0129 -6.0048 20 8 2.6240 3.4999 -5.8982 21 8 1.2052 4.5581 -7.0461 22 6 -0.6802 4.5620 -4.9934 23 7 -1.0403 5.1822 -6.1848 24 6 -2.2286 4.5475 -6.7704 25 6 -1.2569 6.6213 -5.9846 26 6 -1.5760 4.5297 -3.9300 27 6 -1.2190 3.9139 -2.7478 28 9 -2.0856 3.8804 -1.7119 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 5.8769 0.4820 2.1130 35 1 2.2719 2.1231 -1.9978 36 1 1.9149 2.9127 -3.6096 37 1 -3.0619 4.6220 -6.0718 38 1 -2.4887 5.0522 -7.7010 39 1 -2.0171 3.4976 -6.9731 40 1 -0.3389 7.0791 -5.6158 41 1 -1.5377 7.0817 -6.9318 42 1 -2.0550 6.7709 -5.2574 43 1 -2.5498 4.9860 -4.0294 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279336380.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:57:39 Heat of formation + Delta-G solvation = -44.542592 kcal Electronic energy + Delta-G solvation = -30309.133417 eV Core-core repulsion = 25886.831815 eV Total energy + Delta-G solvation = -4422.301602 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -50.41487 -43.28291 -41.60275 -40.62716 -38.08088 -37.37610 -37.12853 -34.52702 -33.59821 -33.01801 -31.71620 -29.45370 -28.61886 -27.49947 -26.73717 -24.84082 -23.88564 -23.52171 -22.49544 -21.51574 -20.59471 -19.77645 -19.20766 -18.83716 -18.55791 -18.19019 -17.80628 -17.41237 -17.17698 -16.66198 -16.24951 -16.10486 -16.04324 -15.87246 -15.34278 -15.12366 -14.83347 -14.54645 -14.25121 -13.90649 -13.78458 -13.64004 -13.58624 -13.17358 -12.99886 -12.92150 -12.79804 -12.71115 -12.54479 -12.44962 -12.28723 -12.11985 -11.89163 -11.46313 -11.29424 -11.07300 -10.88750 -10.77780 -10.56223 -9.93574 -9.74743 -8.39882 -6.46858 -1.43379 -0.90614 0.06413 0.30068 1.26118 1.30878 1.34484 1.43584 2.01802 2.12615 2.24018 2.25745 2.53749 2.94932 2.95596 3.16699 3.40470 3.51623 3.91072 4.04175 4.10823 4.18550 4.24158 4.27964 4.31500 4.32715 4.42716 4.58615 4.64634 4.77077 4.82491 4.96526 4.97778 4.99434 5.05729 5.15978 5.25440 5.30884 5.46510 5.50283 5.66310 5.79725 6.06051 6.52590 6.61144 6.63908 7.05957 7.23391 8.75177 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016597 B = 0.003385 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.600752 B = 8269.999057 C = 9417.006835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.139 4.139 3 C 0.251 3.749 4 H 0.030 0.970 5 C -0.538 4.538 6 H 0.056 0.944 7 C 0.031 3.969 8 N -0.932 5.932 9 Si 0.936 3.064 10 H -0.259 1.259 11 H -0.294 1.294 12 H -0.257 1.257 13 N -0.690 5.690 14 C 0.548 3.452 15 O -0.555 6.555 16 C -0.178 4.178 17 C 0.015 3.985 18 C -0.056 4.056 19 N 0.032 4.968 20 O -0.231 6.231 21 O -0.082 6.082 22 C 0.220 3.780 23 N -0.520 5.520 24 C 0.023 3.977 25 C 0.025 3.975 26 C -0.177 4.177 27 C 0.219 3.781 28 F -0.104 7.104 29 H 0.040 0.960 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.047 0.953 34 H 0.271 0.729 35 H 0.405 0.595 36 H 0.168 0.832 37 H 0.056 0.944 38 H 0.105 0.895 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.106 0.894 42 H 0.056 0.944 43 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.426 9.139 -16.528 27.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.177 4.177 3 C 0.147 3.853 4 H 0.048 0.952 5 C -0.576 4.576 6 H 0.075 0.925 7 C -0.169 4.169 8 N -0.570 5.570 9 Si 0.763 3.237 10 H -0.184 1.184 11 H -0.221 1.221 12 H -0.181 1.181 13 N -0.339 5.339 14 C 0.335 3.665 15 O -0.436 6.436 16 C -0.183 4.183 17 C -0.006 4.006 18 C -0.141 4.141 19 N 0.552 4.448 20 O -0.426 6.426 21 O -0.319 6.319 22 C 0.123 3.877 23 N -0.242 5.242 24 C -0.122 4.122 25 C -0.120 4.120 26 C -0.198 4.198 27 C 0.197 3.803 28 F -0.082 7.082 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.241 0.759 36 H 0.186 0.814 37 H 0.075 0.925 38 H 0.124 0.876 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.125 0.875 42 H 0.074 0.926 43 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -19.764 8.890 -15.412 26.593 hybrid contribution 0.275 -0.443 1.097 1.215 sum -19.489 8.447 -14.315 25.615 Atomic orbital electron populations 1.21773 0.95091 1.00782 1.01567 1.22227 0.95919 0.98219 1.01372 1.18890 0.93481 0.89824 0.83143 0.95176 1.21248 0.90157 1.39029 1.07177 0.92537 1.25548 0.95744 0.95761 0.99838 1.69977 1.10338 1.45859 1.30826 0.86043 0.79381 0.80025 0.78260 1.18447 1.22102 1.18143 1.45982 1.15008 1.55302 1.17616 1.17943 0.82561 0.79098 0.86920 1.90833 1.51818 1.60516 1.40398 1.19946 0.95450 1.07314 0.95586 1.20735 1.00157 0.91206 0.88453 1.20765 0.92309 1.12106 0.88887 1.43403 1.00870 0.98476 1.02030 1.94618 1.08748 1.49780 1.89500 1.94543 1.81165 1.40288 1.15931 1.18515 0.88927 0.89339 0.90931 1.59733 1.39555 1.05424 1.19508 1.22677 0.88177 1.00182 1.01125 1.22653 1.01678 0.83441 1.04216 1.21907 1.03894 1.03900 0.90130 1.17909 0.85444 0.92142 0.84786 1.91662 1.67140 1.93001 1.56396 0.94075 0.93026 0.92090 0.91190 0.93437 0.91996 0.75889 0.81428 0.92502 0.87601 0.91727 0.91982 0.87519 0.92557 0.78424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.00 8.51 71.98 0.61 -4.39 16 2 C -0.14 -5.81 5.11 30.59 0.16 -5.66 16 3 C 0.25 11.50 1.83 44.24 0.08 11.58 16 4 H 0.03 1.54 6.64 -2.39 -0.02 1.52 16 5 C -0.54 -28.90 9.31 25.60 0.24 -28.67 16 6 H 0.06 3.25 7.98 -2.91 -0.02 3.23 16 7 C 0.03 1.75 5.45 84.65 0.46 2.21 16 8 N -0.93 -55.58 13.96 21.45 0.30 -55.28 16 9 Si 0.94 43.95 24.41 68.60 1.67 45.62 16 10 H -0.26 -11.42 6.83 99.48 0.68 -10.74 16 11 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 12 H -0.26 -11.85 6.53 99.48 0.65 -11.20 16 13 N -0.69 -26.18 4.97 -449.42 -2.23 -28.42 16 14 C 0.55 19.37 6.33 86.65 0.55 19.92 16 15 O -0.56 -22.81 12.46 -4.05 -0.05 -22.86 16 16 C -0.18 -4.72 5.88 -20.04 -0.12 -4.84 16 17 C 0.01 0.35 8.99 22.26 0.20 0.55 16 18 C -0.06 -1.26 6.83 36.23 0.25 -1.01 16 19 N 0.03 0.85 4.45 -46.80 -0.21 0.64 16 20 O -0.23 -7.18 18.41 18.89 0.35 -6.83 16 21 O -0.08 -2.11 17.08 18.88 0.32 -1.79 16 22 C 0.22 3.68 4.71 38.45 0.18 3.86 16 23 N -0.52 -6.84 2.82 -745.13 -2.10 -8.95 16 24 C 0.02 0.18 9.33 127.69 1.19 1.38 16 25 C 0.02 0.21 9.38 127.69 1.20 1.41 16 26 C -0.18 -2.54 8.51 22.41 0.19 -2.35 16 27 C 0.22 4.83 7.28 22.66 0.16 4.99 16 28 F -0.10 -2.72 15.54 44.97 0.70 -2.02 16 29 H 0.04 1.62 7.84 -2.39 -0.02 1.60 16 30 H 0.05 1.87 5.64 -2.39 -0.01 1.86 16 31 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 32 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 33 H 0.05 2.08 3.21 -2.39 -0.01 2.07 16 34 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 35 H 0.40 13.73 6.55 -92.71 -0.61 13.12 16 36 H 0.17 4.07 5.89 -2.91 -0.02 4.06 16 37 H 0.06 0.24 7.09 -2.39 -0.02 0.23 16 38 H 0.11 0.49 8.12 -2.38 -0.02 0.47 16 39 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 41 H 0.11 0.53 8.12 -2.39 -0.02 0.52 16 42 H 0.06 0.28 7.32 -2.38 -0.02 0.26 16 43 H 0.20 1.38 6.99 -2.91 -0.02 1.36 16 Total: -1.00 -69.66 354.30 4.49 -65.17 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: 0.39 Total: 15.72 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: 5.35 Total: -1.01 kcal Atomic # 7 Polarization: -87.76 SS G_CDS: -4.25 Total: -92.01 kcal Atomic # 8 Polarization: -32.10 SS G_CDS: 0.62 Total: -31.48 kcal Atomic # 9 Polarization: -2.72 SS G_CDS: 0.70 Total: -2.02 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 1.67 Total: 45.62 kcal Total: -69.66 4.49 -65.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279336380.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.630 kcal (2) G-P(sol) polarization free energy of solvation -69.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds